Wall clock time and date at job start Tue Mar 31 2020 14:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46963 * 2 1 4 4 C 1.52994 * 109.47216 * 239.99405 * 2 1 3 5 5 O 1.45202 * 109.46859 * 119.99463 * 2 1 3 6 6 C 1.34635 * 116.99834 * 59.99913 * 5 2 1 7 7 O 1.21512 * 120.00390 * 0.02562 * 6 5 2 8 8 N 1.34782 * 120.00111 * 179.97438 * 6 5 2 9 9 C 1.46496 * 120.00414 * 179.97438 * 8 6 5 10 10 H 1.08995 * 109.47005 * 325.01020 * 9 8 6 11 11 C 1.53002 * 109.46510 * 85.00098 * 9 8 6 12 12 C 1.53006 * 109.46654 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47380 * 300.00174 * 12 11 9 14 14 C 1.53001 * 109.47242 * 59.99720 * 13 12 11 15 15 H 1.09008 * 109.46731 * 60.00294 * 14 13 12 16 16 C 1.52997 * 109.47242 * 179.97438 * 14 13 12 17 17 N 1.46505 * 109.47212 * 295.00240 * 16 14 13 18 18 C 1.34771 * 119.99622 * 179.97438 * 17 16 14 19 19 O 1.21685 * 120.00526 * 0.02562 * 18 17 16 20 20 C 1.46381 * 119.99614 * 180.02562 * 18 17 16 21 21 H 1.07993 * 120.00106 * 0.02562 * 20 18 17 22 22 C 1.40051 * 119.99693 * 180.02562 * 20 18 17 23 23 N 1.30666 * 120.00364 * 359.97438 * 22 20 18 24 24 Si 1.86805 * 119.99754 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.46872 * 60.00052 * 24 22 20 26 26 H 1.48494 * 109.46914 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.47008 * 300.00175 * 24 22 20 28 28 C 1.52994 * 109.47368 * 300.00569 * 14 13 12 29 29 H 1.09000 * 109.47282 * 300.00379 * 1 2 3 30 30 H 1.09004 * 109.47253 * 60.00575 * 1 2 3 31 31 H 1.09000 * 109.47132 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46955 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.46455 * 299.99277 * 3 2 1 34 34 H 1.09000 * 109.47431 * 59.99712 * 3 2 1 35 35 H 1.09000 * 109.47236 * 300.00140 * 4 2 1 36 36 H 1.08998 * 109.46921 * 60.00316 * 4 2 1 37 37 H 1.08999 * 109.47238 * 179.97438 * 4 2 1 38 38 H 0.97006 * 119.99505 * 0.02562 * 8 6 5 39 39 H 1.08998 * 109.47238 * 60.00781 * 11 9 8 40 40 H 1.08992 * 109.47406 * 299.99781 * 11 9 8 41 41 H 1.09000 * 109.46811 * 179.97438 * 12 11 9 42 42 H 1.08998 * 109.47136 * 60.00111 * 12 11 9 43 43 H 1.09008 * 109.47017 * 300.00189 * 13 12 11 44 44 H 1.08998 * 109.47192 * 180.02562 * 13 12 11 45 45 H 1.09002 * 109.47153 * 175.00232 * 16 14 13 46 46 H 1.09001 * 109.46832 * 55.00423 * 16 14 13 47 47 H 0.96996 * 119.99606 * 0.02562 * 17 16 14 48 48 H 0.97002 * 120.00059 * 179.97438 * 23 22 20 49 49 H 1.09000 * 109.47476 * 179.97438 * 28 14 13 50 50 H 1.09008 * 109.46970 * 299.99579 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 2.0140 -0.6844 1.1857 6 6 1.6521 -1.9722 1.3385 7 8 0.9515 -2.5097 0.5038 8 7 2.0679 -2.6656 2.4169 9 6 1.6737 -4.0666 2.5836 10 1 0.6645 -4.2085 2.1973 11 6 2.6450 -4.9644 1.8145 12 6 2.2330 -6.4277 1.9880 13 6 2.2665 -6.7944 3.4730 14 6 1.2954 -5.8965 4.2421 15 1 0.2860 -6.0381 3.8556 16 6 1.3284 -6.2636 5.7270 17 7 0.8200 -7.6260 5.9047 18 6 0.7567 -8.1661 7.1379 19 8 1.1212 -7.5219 8.1037 20 6 0.2492 -9.5276 7.3153 21 1 -0.0739 -10.0995 6.4581 22 6 0.1829 -10.0886 8.5969 23 7 0.5743 -9.3969 9.6340 24 14 -0.4640 -11.8264 8.8233 25 1 0.3868 -12.7746 8.0601 26 1 -0.4315 -12.1828 10.2645 27 1 -1.8608 -11.9035 8.3250 28 6 1.7072 -4.4333 4.0686 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9562 -0.8901 34 1 1.6766 1.9564 0.8899 35 1 1.6767 -1.7490 -1.2490 36 1 1.6767 -0.2076 -2.1391 37 1 3.1300 -0.7209 -1.2493 38 1 2.6275 -2.2366 3.0831 39 1 3.6543 -4.8226 2.2007 40 1 2.6208 -4.7036 0.7565 41 1 2.9247 -7.0673 1.4397 42 1 1.2237 -6.5693 1.6015 43 1 3.2759 -6.6528 3.8596 44 1 1.9735 -7.8369 3.5966 45 1 0.7047 -5.5671 6.2875 46 1 2.3539 -6.2078 6.0923 47 1 0.5298 -8.1396 5.1347 48 1 0.5280 -9.7854 10.5216 49 1 1.0151 -3.7935 4.6161 50 1 2.7166 -4.2917 4.4551 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496207388.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:39 Heat of formation + Delta-G solvation = -177.490385 kcal Electronic energy + Delta-G solvation = -28166.257809 eV Core-core repulsion = 24191.136608 eV Total energy + Delta-G solvation = -3975.121200 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.86942 -40.34008 -39.16361 -37.97655 -35.96408 -35.16889 -34.62368 -34.14556 -32.09002 -30.35398 -28.62506 -28.34264 -28.27612 -26.23487 -24.35756 -23.10452 -22.14650 -21.42370 -21.34761 -20.64296 -19.24434 -19.03655 -17.68314 -17.40615 -17.13694 -16.68404 -16.25768 -15.94523 -15.87964 -15.63323 -15.41480 -15.36687 -14.93876 -14.57241 -14.46733 -14.26404 -13.74331 -13.61811 -13.31482 -13.25109 -13.14410 -12.93677 -12.88815 -12.85802 -12.83556 -12.64256 -12.56895 -12.50119 -12.33685 -12.18841 -12.05372 -11.96415 -11.54262 -11.41153 -11.33954 -11.21643 -11.03361 -10.90416 -10.14736 -9.85110 -9.42831 -8.27372 -6.83492 1.17587 1.41061 1.44535 1.56082 1.78731 2.26070 2.49290 3.06157 3.24833 3.58949 3.64501 3.75010 3.77379 3.82302 3.96693 3.97536 4.07309 4.24531 4.31520 4.43723 4.49645 4.55539 4.57392 4.63455 4.68027 4.74714 4.78495 4.80366 4.86300 4.89807 4.91720 5.00021 5.07666 5.13857 5.16658 5.23504 5.30126 5.30578 5.32796 5.33445 5.37651 5.41949 5.55121 5.61754 5.90271 6.27135 6.31752 6.43964 6.88562 7.37425 7.58784 8.51835 8.69592 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.032220 B = 0.001943 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.809707 B =14405.345944 C =14714.873297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.124 3.876 3 C -0.136 4.136 4 C -0.179 4.179 5 O -0.371 6.371 6 C 0.646 3.354 7 O -0.591 6.591 8 N -0.698 5.698 9 C 0.173 3.827 10 H 0.078 0.922 11 C -0.123 4.123 12 C -0.107 4.107 13 C -0.112 4.112 14 C -0.077 4.077 15 H 0.080 0.920 16 C 0.141 3.859 17 N -0.753 5.753 18 C 0.537 3.463 19 O -0.635 6.635 20 C -0.574 4.574 21 H 0.088 0.912 22 C 0.027 3.973 23 N -0.823 5.823 24 Si 0.997 3.003 25 H -0.254 1.254 26 H -0.275 1.275 27 H -0.255 1.255 28 C -0.111 4.111 29 H 0.059 0.941 30 H 0.090 0.910 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.101 0.899 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.089 0.911 37 H 0.061 0.939 38 H 0.415 0.585 39 H 0.073 0.927 40 H 0.058 0.942 41 H 0.077 0.923 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.030 0.970 46 H 0.034 0.966 47 H 0.395 0.605 48 H 0.274 0.726 49 H 0.073 0.927 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.756 16.935 -22.583 28.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.088 3.912 3 C -0.193 4.193 4 C -0.236 4.236 5 O -0.285 6.285 6 C 0.399 3.601 7 O -0.482 6.482 8 N -0.357 5.357 9 C 0.069 3.931 10 H 0.096 0.904 11 C -0.161 4.161 12 C -0.145 4.145 13 C -0.150 4.150 14 C -0.096 4.096 15 H 0.099 0.901 16 C 0.017 3.983 17 N -0.407 5.407 18 C 0.341 3.659 19 O -0.522 6.522 20 C -0.611 4.611 21 H 0.106 0.894 22 C -0.188 4.188 23 N -0.452 5.452 24 Si 0.817 3.183 25 H -0.178 1.178 26 H -0.200 1.200 27 H -0.179 1.179 28 C -0.149 4.149 29 H 0.078 0.922 30 H 0.109 0.891 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.120 0.880 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.108 0.892 37 H 0.081 0.919 38 H 0.252 0.748 39 H 0.092 0.908 40 H 0.077 0.923 41 H 0.095 0.905 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.048 0.952 46 H 0.052 0.948 47 H 0.229 0.771 48 H 0.084 0.916 49 H 0.092 0.908 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.709 17.275 -22.178 28.356 hybrid contribution -0.181 -0.673 0.493 0.854 sum 3.529 16.602 -21.685 27.537 Atomic orbital electron populations 1.22476 0.94137 1.03645 1.03479 1.22400 0.94475 0.92726 0.81586 1.21884 1.02441 0.90715 1.04254 1.22459 1.01601 1.02237 0.97282 1.86316 1.71584 1.23209 1.47432 1.18272 0.78622 0.80717 0.82451 1.90893 1.42218 1.71036 1.44048 1.44838 1.55140 1.12375 1.23382 1.20859 0.99136 0.77470 0.95604 0.90394 1.21889 0.99433 0.94859 0.99939 1.21430 1.02339 0.95240 0.95500 1.21587 0.99182 0.99139 0.95091 1.21162 1.00796 0.94994 0.92680 0.90129 1.20963 0.97196 0.84274 0.95891 1.45784 1.70537 1.15662 1.08751 1.18599 0.78092 0.87897 0.81360 1.90547 1.55403 1.65073 1.41224 1.21421 1.45898 0.98892 0.94902 0.89431 1.26982 0.92931 1.04050 0.94795 1.70184 1.36175 1.38952 0.99913 0.85081 0.79669 0.75679 0.77911 1.17783 1.19999 1.17874 1.21691 1.03532 0.95413 0.94304 0.92170 0.89147 0.91982 0.91162 0.88018 0.91340 0.91912 0.89205 0.91948 0.74840 0.90812 0.92321 0.90454 0.91597 0.91846 0.91947 0.95207 0.94791 0.77119 0.91625 0.90804 0.89854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.97 8.37 71.98 0.60 -2.37 16 2 C 0.12 2.01 1.13 -10.79 -0.01 1.99 16 3 C -0.14 -1.36 8.85 71.98 0.64 -0.73 16 4 C -0.18 -2.81 8.37 71.98 0.60 -2.21 16 5 O -0.37 -7.52 9.94 -55.44 -0.55 -8.08 16 6 C 0.65 14.74 8.02 129.79 1.04 15.78 16 7 O -0.59 -16.21 11.54 19.80 0.23 -15.99 16 8 N -0.70 -13.15 5.08 -570.13 -2.90 -16.05 16 9 C 0.17 3.41 2.45 44.99 0.11 3.52 16 10 H 0.08 1.81 7.58 -2.39 -0.02 1.79 16 11 C -0.12 -2.29 5.50 30.60 0.17 -2.12 16 12 C -0.11 -2.01 5.92 30.60 0.18 -1.83 16 13 C -0.11 -2.58 5.08 30.59 0.16 -2.42 16 14 C -0.08 -1.95 2.22 -10.80 -0.02 -1.97 16 15 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 16 C 0.14 5.27 5.07 86.38 0.44 5.70 16 17 N -0.75 -33.32 5.28 -467.40 -2.47 -35.78 16 18 C 0.54 31.27 7.75 86.36 0.67 31.94 16 19 O -0.63 -42.98 15.02 -4.30 -0.06 -43.04 16 20 C -0.57 -32.65 9.54 24.83 0.24 -32.41 16 21 H 0.09 4.43 7.85 -2.91 -0.02 4.41 16 22 C 0.03 1.53 5.50 85.31 0.47 2.00 16 23 N -0.82 -50.79 11.83 21.84 0.26 -50.54 16 24 Si 1.00 41.04 29.56 68.60 2.03 43.07 16 25 H -0.25 -9.79 7.11 99.48 0.71 -9.08 16 26 H -0.28 -10.95 7.11 99.48 0.71 -10.25 16 27 H -0.25 -9.86 7.11 99.48 0.71 -9.15 16 28 C -0.11 -2.28 4.67 30.59 0.14 -2.14 16 29 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.06 1.39 5.88 -2.39 -0.01 1.37 16 32 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.06 1.35 5.88 -2.39 -0.01 1.33 16 36 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.42 6.08 8.71 -92.70 -0.81 5.28 16 39 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 44 H 0.06 1.56 7.18 -2.39 -0.02 1.54 16 45 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 47 H 0.39 14.98 7.63 -92.71 -0.71 14.27 16 48 H 0.27 15.34 8.29 -92.71 -0.77 14.57 16 49 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 50 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 Total: -1.00 -79.18 395.44 1.37 -77.81 By element: Atomic # 1 Polarization: 36.43 SS G_CDS: -0.58 Total: 35.85 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: 5.42 Total: 12.75 kcal Atomic # 7 Polarization: -97.26 SS G_CDS: -5.11 Total: -102.37 kcal Atomic # 8 Polarization: -66.72 SS G_CDS: -0.39 Total: -67.10 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal Total: -79.18 1.37 -77.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496207388.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.684 kcal (2) G-P(sol) polarization free energy of solvation -79.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds