Wall clock time and date at job start Tue Mar 31 2020 14:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47479 * 2 1 4 4 C 1.53004 * 109.46753 * 240.00181 * 2 1 3 5 5 O 1.45200 * 109.46974 * 120.00584 * 2 1 3 6 6 C 1.34636 * 117.00199 * 59.99557 * 5 2 1 7 7 O 1.21504 * 119.99926 * 0.02562 * 6 5 2 8 8 N 1.34778 * 119.99858 * 180.02562 * 6 5 2 9 9 C 1.46496 * 120.00072 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.47021 * 34.99856 * 9 8 6 11 11 C 1.52999 * 109.47487 * 275.00191 * 9 8 6 12 12 C 1.52997 * 109.47317 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.47060 * 59.99960 * 12 11 9 14 14 C 1.53002 * 109.47233 * 299.99657 * 13 12 11 15 15 H 1.09002 * 109.47075 * 300.00932 * 14 13 12 16 16 C 1.52997 * 109.47415 * 180.02562 * 14 13 12 17 17 N 1.46501 * 109.46866 * 65.00069 * 16 14 13 18 18 C 1.34776 * 119.99681 * 180.02562 * 17 16 14 19 19 O 1.21688 * 120.00225 * 0.02562 * 18 17 16 20 20 C 1.46371 * 120.00153 * 179.97438 * 18 17 16 21 21 H 1.08007 * 119.99564 * 0.02562 * 20 18 17 22 22 C 1.40044 * 120.00407 * 179.97438 * 20 18 17 23 23 N 1.30675 * 119.99842 * 0.02562 * 22 20 18 24 24 Si 1.86806 * 120.00363 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.46583 * 90.00124 * 24 22 20 26 26 H 1.48493 * 109.47290 * 210.00045 * 24 22 20 27 27 H 1.48498 * 109.47159 * 330.00732 * 24 22 20 28 28 C 1.52997 * 109.46817 * 60.00194 * 14 13 12 29 29 H 1.08995 * 109.46714 * 300.00028 * 1 2 3 30 30 H 1.09000 * 109.46608 * 59.99251 * 1 2 3 31 31 H 1.08997 * 109.47259 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47289 * 180.02562 * 3 2 1 33 33 H 1.08993 * 109.47241 * 300.00324 * 3 2 1 34 34 H 1.09007 * 109.46883 * 60.00073 * 3 2 1 35 35 H 1.09000 * 109.46939 * 299.99571 * 4 2 1 36 36 H 1.08991 * 109.47340 * 60.00695 * 4 2 1 37 37 H 1.09000 * 109.46898 * 180.02562 * 4 2 1 38 38 H 0.97007 * 120.00235 * 359.97438 * 8 6 5 39 39 H 1.08996 * 109.46929 * 59.99046 * 11 9 8 40 40 H 1.09002 * 109.46716 * 299.99851 * 11 9 8 41 41 H 1.09002 * 109.47153 * 299.99641 * 12 11 9 42 42 H 1.09001 * 109.46832 * 179.97438 * 12 11 9 43 43 H 1.08992 * 109.47399 * 59.99823 * 13 12 11 44 44 H 1.09004 * 109.46724 * 180.02562 * 13 12 11 45 45 H 1.09002 * 109.47223 * 184.99948 * 16 14 13 46 46 H 1.09001 * 109.46547 * 305.00282 * 16 14 13 47 47 H 0.96998 * 120.00018 * 0.02562 * 17 16 14 48 48 H 0.96998 * 119.99872 * 179.97438 * 23 22 20 49 49 H 1.09002 * 109.47153 * 60.00231 * 28 14 13 50 50 H 1.09001 * 109.47289 * 180.02562 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6846 1.1855 6 6 1.6522 -1.9724 1.3382 7 8 0.9515 -2.5097 0.5035 8 7 2.0671 -2.6656 2.4170 9 6 1.6730 -4.0666 2.5835 10 1 1.6264 -4.5494 1.6074 11 6 0.2983 -4.1339 3.2517 12 6 -0.1136 -5.5971 3.4250 13 6 0.9147 -6.3161 4.3005 14 6 2.2894 -6.2490 3.6323 15 1 2.2427 -6.7313 2.6559 16 6 3.3176 -6.9685 4.5075 17 7 2.9887 -8.3946 4.5751 18 6 3.7618 -9.2309 5.2958 19 8 4.7326 -8.8015 5.8906 20 6 3.4330 -10.6556 5.3638 21 1 2.5710 -11.0366 4.8362 22 6 4.2365 -11.5248 6.1122 23 7 5.2796 -11.0638 6.7502 24 14 3.8164 -13.3429 6.1996 25 1 4.4991 -14.0623 5.0943 26 1 4.2689 -13.8934 7.5024 27 1 2.3474 -13.5183 6.0715 28 6 2.7013 -4.7858 3.4590 29 1 -0.3632 0.5138 0.8900 30 1 -0.3632 0.5140 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1301 1.4424 -0.0005 33 1 1.6768 1.9563 -0.8899 34 1 1.6768 1.9563 0.8901 35 1 1.6766 -1.7489 -1.2493 36 1 1.6767 -0.2074 -2.1392 37 1 3.1299 -0.7217 -1.2491 38 1 2.6268 -2.2367 3.0833 39 1 -0.4343 -3.6219 2.6278 40 1 0.3448 -3.6511 4.2279 41 1 -0.1603 -6.0795 2.4487 42 1 -1.0928 -5.6449 3.9014 43 1 0.9613 -5.8338 5.2768 44 1 0.6214 -7.3587 4.4236 45 1 4.3113 -6.8449 4.0770 46 1 3.3010 -6.5438 5.5112 47 1 2.2146 -8.7368 4.1012 48 1 5.8359 -11.6658 7.2688 49 1 2.7480 -4.3034 4.4354 50 1 3.6805 -4.7379 2.9826 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496207389.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:44 Heat of formation + Delta-G solvation = -152.614433 kcal Electronic energy + Delta-G solvation = -28165.304212 eV Core-core repulsion = 24191.261714 eV Total energy + Delta-G solvation = -3974.042498 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.02982 -39.28882 -37.51938 -36.77785 -34.84044 -34.16895 -33.10337 -32.30037 -30.76006 -29.33552 -27.73532 -27.67645 -26.68794 -24.71419 -23.44937 -22.16021 -20.93955 -20.49797 -19.70980 -19.55817 -18.27522 -17.25281 -16.79685 -16.30823 -15.75455 -15.27005 -15.07220 -14.87772 -14.68300 -14.48374 -14.27257 -13.96841 -13.90336 -13.75152 -13.06288 -12.83640 -12.78127 -12.56851 -12.37573 -12.25114 -12.21265 -12.19566 -11.84800 -11.75592 -11.61035 -11.41415 -11.30805 -11.12623 -11.04260 -10.84535 -10.64025 -10.55405 -10.45290 -10.35438 -10.22487 -10.17873 -10.08822 -9.27127 -8.83494 -7.59345 -7.46003 -6.16700 -4.61906 1.96564 2.67557 3.15109 3.21896 3.25250 3.89118 4.12130 4.39845 4.44123 4.51838 4.58506 4.60978 4.65398 4.84679 4.96234 5.08219 5.13707 5.18673 5.21512 5.31426 5.36269 5.36958 5.42181 5.46317 5.49934 5.53539 5.54480 5.65873 5.71437 5.80307 5.87434 5.94665 5.98404 6.01152 6.03593 6.05543 6.20013 6.23500 6.30697 6.36535 6.42190 6.57058 6.66971 7.25731 7.45147 7.95979 8.13514 8.21776 8.35398 9.04553 9.56860 10.62417 10.81403 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.032225 B = 0.001943 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.674242 B =14405.627699 C =14714.973428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.136 3.864 3 C -0.141 4.141 4 C -0.184 4.184 5 O -0.367 6.367 6 C 0.650 3.350 7 O -0.568 6.568 8 N -0.706 5.706 9 C 0.164 3.836 10 H 0.092 0.908 11 C -0.129 4.129 12 C -0.115 4.115 13 C -0.116 4.116 14 C -0.091 4.091 15 H 0.076 0.924 16 C 0.140 3.860 17 N -0.767 5.767 18 C 0.554 3.446 19 O -0.582 6.582 20 C -0.546 4.546 21 H 0.067 0.933 22 C 0.087 3.913 23 N -0.769 5.769 24 Si 0.907 3.093 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.265 1.265 28 C -0.119 4.119 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.405 0.595 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.071 0.929 45 H 0.047 0.953 46 H 0.048 0.952 47 H 0.379 0.621 48 H 0.268 0.732 49 H 0.072 0.928 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.152 22.054 -12.247 27.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.099 3.901 3 C -0.198 4.198 4 C -0.241 4.241 5 O -0.282 6.282 6 C 0.403 3.597 7 O -0.457 6.457 8 N -0.364 5.364 9 C 0.061 3.939 10 H 0.110 0.890 11 C -0.168 4.168 12 C -0.153 4.153 13 C -0.154 4.154 14 C -0.110 4.110 15 H 0.094 0.906 16 C 0.014 3.986 17 N -0.423 5.423 18 C 0.358 3.642 19 O -0.465 6.465 20 C -0.583 4.583 21 H 0.085 0.915 22 C -0.132 4.132 23 N -0.398 5.398 24 Si 0.732 3.268 25 H -0.198 1.198 26 H -0.205 1.205 27 H -0.189 1.189 28 C -0.157 4.157 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.107 0.893 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.107 0.893 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.239 0.761 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.090 0.910 45 H 0.065 0.935 46 H 0.066 0.934 47 H 0.211 0.789 48 H 0.078 0.922 49 H 0.091 0.909 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.609 22.155 -12.149 27.033 hybrid contribution -0.326 -0.768 0.064 0.837 sum -9.935 21.386 -12.085 26.498 Atomic orbital electron populations 1.22512 0.94019 1.05112 1.02385 1.22052 0.94341 0.91482 0.82176 1.21862 1.02289 0.92584 1.03066 1.22519 1.01594 1.03581 0.96402 1.86302 1.71658 1.23823 1.46426 1.18118 0.78868 0.80431 0.82298 1.90894 1.41137 1.70297 1.43407 1.44935 1.55271 1.12800 1.23406 1.21041 0.94267 0.78058 1.00521 0.89028 1.21950 0.96345 0.97668 1.00798 1.21501 0.98857 0.94438 1.00523 1.21633 0.93759 1.01260 0.98700 1.21308 0.95559 0.94080 1.00096 0.90598 1.20857 0.96057 0.83734 0.97928 1.46122 1.32969 1.06208 1.56966 1.18205 0.81745 0.86402 0.77847 1.90596 1.29682 1.78091 1.48172 1.20890 1.13234 0.91349 1.32827 0.91487 1.25709 0.93869 1.00051 0.93614 1.70025 1.11756 1.35552 1.22436 0.86389 0.79528 0.82906 0.78007 1.19780 1.20492 1.18933 1.21797 0.98249 0.95672 1.00009 0.92243 0.91213 0.89310 0.91453 0.90182 0.91502 0.89291 0.91204 0.92165 0.76051 0.91695 0.91704 0.91711 0.91703 0.91723 0.90998 0.93475 0.93394 0.78884 0.92163 0.90899 0.90859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.54 8.37 37.16 0.31 -1.23 16 2 C 0.14 1.18 1.13 -90.62 -0.10 1.08 16 3 C -0.14 -0.86 8.85 37.16 0.33 -0.53 16 4 C -0.18 -1.59 8.37 37.16 0.31 -1.28 16 5 O -0.37 -3.88 9.94 -40.31 -0.40 -4.28 16 6 C 0.65 7.56 8.02 54.06 0.43 7.99 16 7 O -0.57 -7.76 11.54 -19.27 -0.22 -7.98 16 8 N -0.71 -6.97 5.08 -58.73 -0.30 -7.27 16 9 C 0.16 1.70 2.45 -67.93 -0.17 1.54 16 10 H 0.09 1.09 7.58 -51.93 -0.39 0.70 16 11 C -0.13 -1.30 5.49 -26.73 -0.15 -1.45 16 12 C -0.12 -1.18 5.92 -26.73 -0.16 -1.34 16 13 C -0.12 -1.40 5.08 -26.73 -0.14 -1.53 16 14 C -0.09 -1.18 2.22 -90.62 -0.20 -1.38 16 15 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 16 C 0.14 2.55 5.07 -4.04 -0.02 2.53 16 17 N -0.77 -16.74 5.28 -61.72 -0.33 -17.06 16 18 C 0.55 15.74 7.75 -12.99 -0.10 15.64 16 19 O -0.58 -18.94 15.02 5.20 0.08 -18.87 16 20 C -0.55 -15.42 9.54 -35.63 -0.34 -15.76 16 21 H 0.07 1.73 7.85 -52.48 -0.41 1.32 16 22 C 0.09 2.44 5.50 -17.37 -0.10 2.35 16 23 N -0.77 -23.18 11.83 55.55 0.66 -22.52 16 24 Si 0.91 20.18 29.56 -169.99 -5.02 15.16 16 25 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 26 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 27 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 28 C -0.12 -1.28 4.67 -26.73 -0.12 -1.40 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.09 0.96 5.88 -51.93 -0.31 0.65 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.39 8.14 -51.92 -0.42 -0.03 16 35 H 0.09 0.99 5.88 -51.93 -0.31 0.68 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.40 3.22 8.71 -40.82 -0.36 2.87 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.07 0.94 7.18 -51.93 -0.37 0.56 16 45 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 46 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 47 H 0.38 7.26 7.63 -40.82 -0.31 6.95 16 48 H 0.27 7.31 8.29 -40.82 -0.34 6.97 16 49 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 50 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 395.43 15.07 5.96 5.96 Total: -1.00 -35.24 395.43 -8.56 -43.80 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -8.78 Total: 7.84 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: -0.21 Total: 5.21 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: 0.03 Total: -46.86 kcal Atomic # 8 Polarization: -30.58 SS G_CDS: -0.54 Total: -31.12 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.24 -8.56 -43.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496207389.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.814 kcal (2) G-P(sol) polarization free energy of solvation -35.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds