Wall clock time and date at job start Tue Mar 31 2020 14:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47479 * 2 1 4 4 C 1.53004 * 109.46753 * 240.00181 * 2 1 3 5 5 O 1.45200 * 109.46974 * 120.00584 * 2 1 3 6 6 C 1.34636 * 117.00199 * 59.99557 * 5 2 1 7 7 O 1.21504 * 119.99926 * 0.02562 * 6 5 2 8 8 N 1.34778 * 119.99858 * 180.02562 * 6 5 2 9 9 C 1.46496 * 120.00072 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.47021 * 34.99856 * 9 8 6 11 11 C 1.52999 * 109.47487 * 275.00191 * 9 8 6 12 12 C 1.52997 * 109.47317 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.47060 * 59.99960 * 12 11 9 14 14 C 1.53002 * 109.47233 * 299.99657 * 13 12 11 15 15 H 1.09002 * 109.47075 * 300.00932 * 14 13 12 16 16 C 1.52997 * 109.47415 * 180.02562 * 14 13 12 17 17 N 1.46501 * 109.46866 * 65.00069 * 16 14 13 18 18 C 1.34776 * 119.99681 * 180.02562 * 17 16 14 19 19 O 1.21688 * 120.00225 * 0.02562 * 18 17 16 20 20 C 1.46371 * 120.00153 * 179.97438 * 18 17 16 21 21 H 1.08007 * 119.99564 * 0.02562 * 20 18 17 22 22 C 1.40044 * 120.00407 * 179.97438 * 20 18 17 23 23 N 1.30675 * 119.99842 * 0.02562 * 22 20 18 24 24 Si 1.86806 * 120.00363 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.46583 * 90.00124 * 24 22 20 26 26 H 1.48493 * 109.47290 * 210.00045 * 24 22 20 27 27 H 1.48498 * 109.47159 * 330.00732 * 24 22 20 28 28 C 1.52997 * 109.46817 * 60.00194 * 14 13 12 29 29 H 1.08995 * 109.46714 * 300.00028 * 1 2 3 30 30 H 1.09000 * 109.46608 * 59.99251 * 1 2 3 31 31 H 1.08997 * 109.47259 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47289 * 180.02562 * 3 2 1 33 33 H 1.08993 * 109.47241 * 300.00324 * 3 2 1 34 34 H 1.09007 * 109.46883 * 60.00073 * 3 2 1 35 35 H 1.09000 * 109.46939 * 299.99571 * 4 2 1 36 36 H 1.08991 * 109.47340 * 60.00695 * 4 2 1 37 37 H 1.09000 * 109.46898 * 180.02562 * 4 2 1 38 38 H 0.97007 * 120.00235 * 359.97438 * 8 6 5 39 39 H 1.08996 * 109.46929 * 59.99046 * 11 9 8 40 40 H 1.09002 * 109.46716 * 299.99851 * 11 9 8 41 41 H 1.09002 * 109.47153 * 299.99641 * 12 11 9 42 42 H 1.09001 * 109.46832 * 179.97438 * 12 11 9 43 43 H 1.08992 * 109.47399 * 59.99823 * 13 12 11 44 44 H 1.09004 * 109.46724 * 180.02562 * 13 12 11 45 45 H 1.09002 * 109.47223 * 184.99948 * 16 14 13 46 46 H 1.09001 * 109.46547 * 305.00282 * 16 14 13 47 47 H 0.96998 * 120.00018 * 0.02562 * 17 16 14 48 48 H 0.96998 * 119.99872 * 179.97438 * 23 22 20 49 49 H 1.09002 * 109.47153 * 60.00231 * 28 14 13 50 50 H 1.09001 * 109.47289 * 180.02562 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6846 1.1855 6 6 1.6522 -1.9724 1.3382 7 8 0.9515 -2.5097 0.5035 8 7 2.0671 -2.6656 2.4170 9 6 1.6730 -4.0666 2.5835 10 1 1.6264 -4.5494 1.6074 11 6 0.2983 -4.1339 3.2517 12 6 -0.1136 -5.5971 3.4250 13 6 0.9147 -6.3161 4.3005 14 6 2.2894 -6.2490 3.6323 15 1 2.2427 -6.7313 2.6559 16 6 3.3176 -6.9685 4.5075 17 7 2.9887 -8.3946 4.5751 18 6 3.7618 -9.2309 5.2958 19 8 4.7326 -8.8015 5.8906 20 6 3.4330 -10.6556 5.3638 21 1 2.5710 -11.0366 4.8362 22 6 4.2365 -11.5248 6.1122 23 7 5.2796 -11.0638 6.7502 24 14 3.8164 -13.3429 6.1996 25 1 4.4991 -14.0623 5.0943 26 1 4.2689 -13.8934 7.5024 27 1 2.3474 -13.5183 6.0715 28 6 2.7013 -4.7858 3.4590 29 1 -0.3632 0.5138 0.8900 30 1 -0.3632 0.5140 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1301 1.4424 -0.0005 33 1 1.6768 1.9563 -0.8899 34 1 1.6768 1.9563 0.8901 35 1 1.6766 -1.7489 -1.2493 36 1 1.6767 -0.2074 -2.1392 37 1 3.1299 -0.7217 -1.2491 38 1 2.6268 -2.2367 3.0833 39 1 -0.4343 -3.6219 2.6278 40 1 0.3448 -3.6511 4.2279 41 1 -0.1603 -6.0795 2.4487 42 1 -1.0928 -5.6449 3.9014 43 1 0.9613 -5.8338 5.2768 44 1 0.6214 -7.3587 4.4236 45 1 4.3113 -6.8449 4.0770 46 1 3.3010 -6.5438 5.5112 47 1 2.2146 -8.7368 4.1012 48 1 5.8359 -11.6658 7.2688 49 1 2.7480 -4.3034 4.4354 50 1 3.6805 -4.7379 2.9826 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496207389.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:44 Heat of formation + Delta-G solvation = -177.531165 kcal Electronic energy + Delta-G solvation = -28166.384683 eV Core-core repulsion = 24191.261714 eV Total energy + Delta-G solvation = -3975.122969 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.87013 -40.34017 -39.16391 -37.97721 -35.96488 -35.16897 -34.62404 -34.14586 -32.08997 -30.35395 -28.62708 -28.34253 -28.27639 -26.23538 -24.35766 -23.10444 -22.14716 -21.42424 -21.34770 -20.64296 -19.24555 -19.03724 -17.68381 -17.40943 -17.13741 -16.68379 -16.25845 -15.94491 -15.87477 -15.63377 -15.41473 -15.36698 -14.93936 -14.57491 -14.46824 -14.26938 -13.74241 -13.61825 -13.31525 -13.25256 -13.14154 -12.92913 -12.88802 -12.86702 -12.83834 -12.66776 -12.56640 -12.50174 -12.33688 -12.18840 -12.01697 -11.96276 -11.54280 -11.41135 -11.33950 -11.21605 -11.03395 -10.91938 -10.14735 -9.84929 -9.42850 -8.27692 -6.83600 1.17599 1.41069 1.42513 1.57758 1.78766 2.25881 2.49085 3.06144 3.24805 3.58932 3.64414 3.75017 3.77396 3.82280 3.96705 3.97552 4.07300 4.24548 4.31501 4.43757 4.49670 4.55533 4.57435 4.63473 4.68046 4.74739 4.78486 4.80377 4.86293 4.89822 4.91714 5.00041 5.07678 5.13856 5.16618 5.23499 5.30137 5.30580 5.32799 5.33579 5.37681 5.41986 5.55138 5.61764 5.90281 6.27159 6.31746 6.43991 6.88547 7.37430 7.58687 8.51727 8.69520 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.032225 B = 0.001943 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.674242 B =14405.627699 C =14714.973428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.124 3.876 3 C -0.136 4.136 4 C -0.180 4.180 5 O -0.371 6.371 6 C 0.646 3.354 7 O -0.591 6.591 8 N -0.698 5.698 9 C 0.173 3.827 10 H 0.078 0.922 11 C -0.123 4.123 12 C -0.107 4.107 13 C -0.112 4.112 14 C -0.077 4.077 15 H 0.080 0.920 16 C 0.141 3.859 17 N -0.753 5.753 18 C 0.536 3.464 19 O -0.635 6.635 20 C -0.574 4.574 21 H 0.088 0.912 22 C 0.027 3.973 23 N -0.823 5.823 24 Si 0.998 3.002 25 H -0.262 1.262 26 H -0.274 1.274 27 H -0.248 1.248 28 C -0.111 4.111 29 H 0.061 0.939 30 H 0.089 0.911 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.101 0.899 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.090 0.910 37 H 0.059 0.941 38 H 0.415 0.585 39 H 0.058 0.942 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.030 0.970 46 H 0.034 0.966 47 H 0.395 0.605 48 H 0.274 0.726 49 H 0.083 0.917 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.713 22.417 -13.116 28.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.088 3.912 3 C -0.193 4.193 4 C -0.237 4.237 5 O -0.285 6.285 6 C 0.399 3.601 7 O -0.482 6.482 8 N -0.357 5.357 9 C 0.069 3.931 10 H 0.096 0.904 11 C -0.161 4.161 12 C -0.145 4.145 13 C -0.150 4.150 14 C -0.096 4.096 15 H 0.099 0.901 16 C 0.017 3.983 17 N -0.407 5.407 18 C 0.340 3.660 19 O -0.522 6.522 20 C -0.610 4.610 21 H 0.106 0.894 22 C -0.188 4.188 23 N -0.452 5.452 24 Si 0.817 3.183 25 H -0.187 1.187 26 H -0.198 1.198 27 H -0.172 1.172 28 C -0.149 4.149 29 H 0.081 0.919 30 H 0.108 0.892 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.120 0.880 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.109 0.891 37 H 0.078 0.922 38 H 0.252 0.748 39 H 0.077 0.923 40 H 0.092 0.908 41 H 0.084 0.916 42 H 0.095 0.905 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.048 0.952 46 H 0.052 0.948 47 H 0.229 0.771 48 H 0.084 0.916 49 H 0.101 0.899 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.210 22.562 -13.050 28.373 hybrid contribution 0.163 -0.791 0.291 0.858 sum -11.047 21.771 -12.759 27.546 Atomic orbital electron populations 1.22460 0.93890 1.03689 1.03537 1.22402 0.94646 0.92665 0.81477 1.21883 1.02368 0.90724 1.04318 1.22476 1.01525 1.02258 0.97479 1.86315 1.71660 1.23184 1.47387 1.18268 0.78706 0.80805 0.82278 1.90891 1.42181 1.70853 1.44267 1.44836 1.55115 1.12490 1.23294 1.20860 0.94321 0.78245 0.99647 0.90391 1.21888 0.95700 0.97531 1.01003 1.21431 0.98720 0.94148 1.00209 1.21588 0.93444 1.00999 0.98969 1.21164 0.94549 0.94895 0.99031 0.90127 1.20963 0.97055 0.82071 0.98234 1.45786 1.32293 1.07273 1.55381 1.18606 0.81708 0.87621 0.78025 1.90548 1.32023 1.79136 1.50536 1.21445 1.14237 0.91854 1.33496 0.89438 1.26984 0.93175 1.06199 0.92419 1.70194 1.13345 1.38180 1.23524 0.85025 0.80078 0.74870 0.78345 1.18707 1.19847 1.17154 1.21693 0.98368 0.94121 1.00758 0.91946 0.89204 0.91918 0.91345 0.88019 0.91158 0.91980 0.89148 0.92172 0.74839 0.92322 0.90812 0.91590 0.90452 0.91838 0.91951 0.95208 0.94787 0.77118 0.91633 0.89856 0.90807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.81 8.37 71.98 0.60 -2.21 16 2 C 0.12 2.01 1.13 -10.79 -0.01 1.99 16 3 C -0.14 -1.36 8.85 71.98 0.64 -0.72 16 4 C -0.18 -2.97 8.37 71.98 0.60 -2.37 16 5 O -0.37 -7.52 9.94 -55.45 -0.55 -8.08 16 6 C 0.65 14.73 8.02 129.79 1.04 15.78 16 7 O -0.59 -16.21 11.54 19.83 0.23 -15.98 16 8 N -0.70 -13.15 5.08 -570.13 -2.90 -16.05 16 9 C 0.17 3.41 2.45 44.99 0.11 3.52 16 10 H 0.08 1.81 7.58 -2.39 -0.02 1.79 16 11 C -0.12 -2.28 5.49 30.59 0.17 -2.12 16 12 C -0.11 -2.01 5.92 30.59 0.18 -1.83 16 13 C -0.11 -2.58 5.08 30.60 0.16 -2.42 16 14 C -0.08 -1.95 2.22 -10.79 -0.02 -1.98 16 15 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 16 C 0.14 5.26 5.07 86.38 0.44 5.70 16 17 N -0.75 -33.31 5.28 -467.41 -2.47 -35.78 16 18 C 0.54 31.26 7.75 86.36 0.67 31.93 16 19 O -0.63 -42.97 15.02 -4.31 -0.06 -43.04 16 20 C -0.57 -32.60 9.54 24.83 0.24 -32.36 16 21 H 0.09 4.44 7.85 -2.91 -0.02 4.41 16 22 C 0.03 1.52 5.50 85.30 0.47 1.99 16 23 N -0.82 -50.79 11.83 21.83 0.26 -50.54 16 24 Si 1.00 41.07 29.56 68.60 2.03 43.10 16 25 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 26 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 27 H -0.25 -9.46 7.11 99.48 0.71 -8.75 16 28 C -0.11 -2.28 4.67 30.60 0.14 -2.14 16 29 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.06 1.35 5.88 -2.39 -0.01 1.33 16 32 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 35 H 0.06 1.39 5.88 -2.39 -0.01 1.37 16 36 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.42 6.08 8.71 -92.70 -0.81 5.28 16 39 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.06 1.56 7.18 -2.39 -0.02 1.54 16 45 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 47 H 0.39 14.98 7.63 -92.71 -0.71 14.27 16 48 H 0.27 15.29 8.29 -92.71 -0.77 14.52 16 49 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 50 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -79.22 395.43 1.37 -77.84 By element: Atomic # 1 Polarization: 36.33 SS G_CDS: -0.58 Total: 35.75 kcal Atomic # 6 Polarization: 7.35 SS G_CDS: 5.42 Total: 12.77 kcal Atomic # 7 Polarization: -97.25 SS G_CDS: -5.11 Total: -102.36 kcal Atomic # 8 Polarization: -66.71 SS G_CDS: -0.39 Total: -67.10 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.10 kcal Total: -79.22 1.37 -77.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496207389.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.688 kcal (2) G-P(sol) polarization free energy of solvation -79.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds