Wall clock time and date at job start Tue Mar 31 2020 15:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46644 * 2 1 4 4 C 1.52994 * 109.47536 * 240.00088 * 2 1 3 5 5 O 1.45202 * 109.47407 * 119.99512 * 2 1 3 6 6 C 1.34637 * 116.99661 * 60.00257 * 5 2 1 7 7 O 1.21512 * 120.00009 * 0.02562 * 6 5 2 8 8 N 1.34777 * 120.00292 * 180.02562 * 6 5 2 9 9 C 1.46491 * 120.00532 * 180.27752 * 8 6 5 10 10 H 1.09005 * 109.47230 * 324.72366 * 9 8 6 11 11 C 1.52996 * 109.47620 * 204.72711 * 9 8 6 12 12 C 1.52998 * 109.47470 * 65.19696 * 11 9 8 13 13 C 1.50695 * 109.47389 * 180.02562 * 12 11 9 14 14 H 1.08007 * 119.99957 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00251 * 180.02562 * 13 12 11 16 16 N 1.31519 * 120.00053 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00357 * 180.02562 * 15 13 12 18 18 H 1.48513 * 109.46872 * 59.99986 * 17 15 13 19 19 H 1.48497 * 109.47425 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47357 * 300.00162 * 17 15 13 21 21 C 1.50700 * 109.47457 * 84.71869 * 9 8 6 22 22 O 1.21280 * 119.99510 * 23.50825 * 21 9 8 23 23 N 1.34774 * 120.00251 * 203.50241 * 21 9 8 24 24 C 1.47029 * 125.64574 * 184.68478 * 23 21 9 25 25 C 1.54313 * 107.27181 * 180.97436 * 24 23 21 26 26 C 1.55148 * 102.86820 * 22.52489 * 25 24 23 27 27 C 1.47417 * 125.65099 * 4.99840 * 23 21 9 28 28 H 1.09000 * 109.47256 * 299.99857 * 1 2 3 29 29 H 1.09003 * 109.47328 * 60.00368 * 1 2 3 30 30 H 1.09003 * 109.47080 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47217 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47222 * 299.99935 * 3 2 1 33 33 H 1.09001 * 109.47701 * 60.00075 * 3 2 1 34 34 H 1.09003 * 109.46687 * 299.99935 * 4 2 1 35 35 H 1.09003 * 109.47185 * 59.99456 * 4 2 1 36 36 H 1.08999 * 109.47797 * 179.97438 * 4 2 1 37 37 H 0.97007 * 119.99764 * 359.97438 * 8 6 5 38 38 H 1.08994 * 109.47707 * 185.20909 * 11 9 8 39 39 H 1.09006 * 109.46489 * 305.20314 * 11 9 8 40 40 H 1.08995 * 109.47747 * 300.00704 * 12 11 9 41 41 H 1.09006 * 109.46760 * 60.00784 * 12 11 9 42 42 H 0.96992 * 120.00379 * 180.02562 * 16 15 13 43 43 H 1.09005 * 109.87953 * 300.51319 * 24 23 21 44 44 H 1.08994 * 109.88085 * 61.68407 * 24 23 21 45 45 H 1.09004 * 110.92119 * 264.10921 * 25 24 23 46 46 H 1.09003 * 110.58920 * 140.78960 * 25 24 23 47 47 H 1.09003 * 111.01148 * 206.22947 * 26 25 24 48 48 H 1.09000 * 111.00723 * 82.37685 * 26 25 24 49 49 H 1.09001 * 110.36760 * 274.67164 * 27 23 21 50 50 H 1.09007 * 110.36756 * 36.88310 * 27 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0141 -0.6844 1.1856 6 6 1.6523 -1.9722 1.3384 7 8 0.9517 -2.5097 0.5036 8 7 2.0673 -2.6653 2.4172 9 6 1.6788 -4.0683 2.5805 10 1 0.6695 -4.2131 2.1950 11 6 1.7158 -4.4385 4.0645 12 6 0.6507 -3.6380 4.8166 13 6 0.6875 -4.0022 6.2784 14 1 1.3998 -4.7314 6.6355 15 6 -0.1879 -3.4045 7.1601 16 7 -1.0548 -2.5161 6.7255 17 14 -0.1418 -3.8553 8.9723 18 1 1.1988 -3.5382 9.5273 19 1 -1.1756 -3.0784 9.7022 20 1 -0.4112 -5.3074 9.1282 21 6 2.6378 -4.9470 1.8195 22 8 3.7552 -4.5487 1.5670 23 7 2.2539 -6.1755 1.4195 24 6 3.1131 -7.1690 0.7590 25 6 2.2405 -8.4079 0.4675 26 6 0.8030 -7.8242 0.4609 27 6 0.9013 -6.7431 1.5661 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1299 1.4427 0.0005 32 1 1.6765 1.9563 -0.8899 33 1 1.6765 1.9564 0.8900 34 1 1.6767 -1.7489 -1.2491 35 1 1.6767 -0.2074 -2.1392 36 1 3.1301 -0.7208 -1.2494 37 1 2.6269 -2.2364 3.0835 38 1 1.5172 -5.5042 4.1783 39 1 2.6997 -4.2068 4.4723 40 1 0.8493 -2.5723 4.7029 41 1 -0.3333 -3.8697 4.4088 42 1 -1.6705 -2.0954 7.3457 43 1 3.5032 -6.7604 -0.1733 44 1 3.9360 -7.4444 1.4186 45 1 2.3499 -9.1548 1.2538 46 1 2.4892 -8.8316 -0.5056 47 1 0.0703 -8.5869 0.7246 48 1 0.5677 -7.3758 -0.5043 49 1 0.7844 -7.1955 2.5508 50 1 0.1472 -5.9712 1.4121 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496222601.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:09 Heat of formation + Delta-G solvation = -131.376916 kcal Electronic energy + Delta-G solvation = -29583.142887 eV Core-core repulsion = 25610.021317 eV Total energy + Delta-G solvation = -3973.121570 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.67782 -39.84704 -37.73627 -36.75399 -35.22107 -33.97843 -33.06443 -31.81540 -30.88133 -29.16861 -27.40906 -27.36343 -27.28803 -24.42681 -23.27453 -22.14476 -21.18954 -20.57155 -19.80947 -19.11732 -17.99041 -17.23143 -16.62406 -16.36094 -16.12373 -15.75346 -15.48842 -14.76649 -14.47771 -14.33320 -14.12517 -13.97696 -13.57460 -13.42633 -13.32529 -13.02572 -12.73771 -12.45301 -12.33241 -12.22818 -12.08052 -11.86280 -11.81337 -11.73460 -11.44790 -11.38083 -11.32116 -11.19215 -10.98211 -10.87879 -10.82523 -10.68161 -10.23844 -10.09455 -10.02196 -9.78031 -9.56280 -9.21030 -8.66216 -8.54839 -8.40129 -6.05496 -4.09233 2.35240 2.86872 2.98765 3.30155 3.31976 3.35340 3.37354 4.36394 4.40872 4.45946 4.50323 4.78339 4.79018 4.83043 4.96442 4.97401 5.19351 5.28854 5.30271 5.33551 5.48589 5.51486 5.57509 5.58804 5.63646 5.70368 5.71961 5.76052 5.78459 5.82250 5.88128 5.93501 6.01419 6.05732 6.11934 6.31384 6.36226 6.41231 6.47614 6.61534 6.79137 6.81773 7.57077 7.59387 7.66400 7.75989 7.91822 8.31305 8.34844 8.69552 8.96786 9.55473 11.05291 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.007101 B = 0.004900 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3942.216540 B = 5713.388033 C = 8824.812378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.136 3.864 3 C -0.140 4.140 4 C -0.182 4.182 5 O -0.362 6.362 6 C 0.658 3.342 7 O -0.577 6.577 8 N -0.678 5.678 9 C 0.154 3.846 10 H 0.109 0.891 11 C -0.112 4.112 12 C 0.027 3.973 13 C -0.525 4.525 14 H 0.055 0.945 15 C 0.060 3.940 16 N -0.892 5.892 17 Si 0.892 3.108 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C 0.523 3.477 22 O -0.540 6.540 23 N -0.618 5.618 24 C 0.107 3.893 25 C -0.131 4.131 26 C -0.133 4.133 27 C 0.094 3.906 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.066 0.934 36 H 0.058 0.942 37 H 0.413 0.587 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.023 0.977 41 H 0.019 0.981 42 H 0.262 0.738 43 H 0.064 0.936 44 H 0.065 0.935 45 H 0.077 0.923 46 H 0.079 0.921 47 H 0.085 0.915 48 H 0.075 0.925 49 H 0.076 0.924 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.927 -3.412 -15.511 16.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.197 4.197 4 C -0.239 4.239 5 O -0.277 6.277 6 C 0.412 3.588 7 O -0.467 6.467 8 N -0.335 5.335 9 C 0.046 3.954 10 H 0.127 0.873 11 C -0.150 4.150 12 C -0.011 4.011 13 C -0.563 4.563 14 H 0.074 0.926 15 C -0.142 4.142 16 N -0.530 5.530 17 Si 0.720 3.280 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 C 0.311 3.689 22 O -0.416 6.416 23 N -0.353 5.353 24 C -0.016 4.016 25 C -0.169 4.169 26 C -0.171 4.171 27 C -0.029 4.029 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.107 0.893 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.106 0.894 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.249 0.751 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.041 0.959 41 H 0.037 0.963 42 H 0.071 0.929 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.096 0.904 46 H 0.098 0.902 47 H 0.103 0.897 48 H 0.094 0.906 49 H 0.095 0.905 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.065 -3.165 -16.010 16.819 hybrid contribution 0.167 -0.036 1.253 1.265 sum 4.232 -3.200 -14.757 15.682 Atomic orbital electron populations 1.22517 0.93975 1.05243 1.02337 1.22005 0.94425 0.91410 0.82222 1.21849 1.02135 0.92763 1.02994 1.22499 1.01453 1.03532 0.96398 1.86308 1.71407 1.23780 1.46155 1.17976 0.78501 0.80357 0.81998 1.90842 1.41793 1.70649 1.43428 1.44306 1.55106 1.10753 1.23362 1.21069 0.97511 0.78263 0.98559 0.87345 1.21972 1.02955 1.01872 0.88198 1.19096 0.92437 0.95250 0.94274 1.21129 1.18400 1.24050 0.92762 0.92630 1.24994 0.95353 0.94984 0.98830 1.69951 1.20658 1.27343 1.35090 0.86661 0.77759 0.78499 0.85097 1.20218 1.21289 1.20224 1.21134 0.88778 0.80426 0.78560 1.90655 1.21893 1.72496 1.56589 1.48464 1.12155 1.14540 1.60171 1.21878 0.93816 0.88281 0.97579 1.22642 0.95007 0.96745 1.02550 1.22778 0.97006 0.98013 0.99263 1.22460 0.84269 0.96731 0.99432 0.91909 0.91494 0.89253 0.91594 0.90390 0.91335 0.89410 0.91468 0.92339 0.75091 0.90817 0.91665 0.95892 0.96261 0.92852 0.91753 0.91627 0.90424 0.90211 0.89656 0.90584 0.90543 0.89924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.49 8.37 37.16 0.31 -2.18 16 2 C 0.14 1.89 1.13 -90.62 -0.10 1.78 16 3 C -0.14 -1.49 8.85 37.16 0.33 -1.16 16 4 C -0.18 -2.39 8.37 37.15 0.31 -2.08 16 5 O -0.36 -6.17 9.94 -40.32 -0.40 -6.57 16 6 C 0.66 12.33 8.01 54.06 0.43 12.76 16 7 O -0.58 -11.29 11.55 -19.28 -0.22 -11.52 16 8 N -0.68 -12.52 4.15 -59.87 -0.25 -12.77 16 9 C 0.15 2.78 1.89 -69.09 -0.13 2.65 16 10 H 0.11 1.98 6.18 -51.93 -0.32 1.66 16 11 C -0.11 -2.16 4.67 -26.73 -0.12 -2.28 16 12 C 0.03 0.64 4.86 -27.89 -0.14 0.50 16 13 C -0.53 -14.10 9.11 -34.44 -0.31 -14.41 16 14 H 0.06 1.44 7.74 -52.48 -0.41 1.04 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 16 N -0.89 -25.97 13.29 55.43 0.74 -25.23 16 17 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 C 0.52 9.41 7.02 -10.99 -0.08 9.33 16 22 O -0.54 -11.23 16.93 5.56 0.09 -11.14 16 23 N -0.62 -9.07 3.33 -170.52 -0.57 -9.64 16 24 C 0.11 1.30 6.87 -3.07 -0.02 1.28 16 25 C -0.13 -1.12 6.95 -24.91 -0.17 -1.30 16 26 C -0.13 -1.18 7.08 -24.59 -0.17 -1.35 16 27 C 0.09 1.12 6.63 -2.53 -0.02 1.10 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.09 1.43 5.88 -51.93 -0.31 1.13 16 31 H 0.06 0.68 8.14 -51.92 -0.42 0.25 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.09 1.39 5.88 -51.93 -0.31 1.08 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.41 7.31 8.71 -40.82 -0.36 6.95 16 38 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 39 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.02 0.59 7.76 -51.93 -0.40 0.18 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 43 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 44 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 47 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 49 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 50 H 0.08 1.03 6.92 -51.92 -0.36 0.67 16 LS Contribution 401.12 15.07 6.04 6.04 Total: -1.00 -33.06 401.12 -8.34 -41.40 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -8.78 Total: 7.20 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: 0.02 Total: 6.21 kcal Atomic # 7 Polarization: -47.56 SS G_CDS: -0.08 Total: -47.64 kcal Atomic # 8 Polarization: -28.70 SS G_CDS: -0.53 Total: -29.23 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.06 -8.34 -41.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496222601.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.975 kcal (2) G-P(sol) polarization free energy of solvation -33.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds