Wall clock time and date at job start Tue Mar 31 2020 15:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46644 * 2 1 4 4 C 1.52994 * 109.47536 * 240.00088 * 2 1 3 5 5 O 1.45202 * 109.47407 * 119.99512 * 2 1 3 6 6 C 1.34637 * 116.99661 * 60.00257 * 5 2 1 7 7 O 1.21512 * 120.00009 * 0.02562 * 6 5 2 8 8 N 1.34777 * 120.00292 * 180.02562 * 6 5 2 9 9 C 1.46491 * 120.00532 * 180.27752 * 8 6 5 10 10 H 1.09005 * 109.47230 * 324.72366 * 9 8 6 11 11 C 1.52996 * 109.47620 * 204.72711 * 9 8 6 12 12 C 1.52998 * 109.47470 * 65.19696 * 11 9 8 13 13 C 1.50695 * 109.47389 * 180.02562 * 12 11 9 14 14 H 1.08007 * 119.99957 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00251 * 180.02562 * 13 12 11 16 16 N 1.31519 * 120.00053 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00357 * 180.02562 * 15 13 12 18 18 H 1.48513 * 109.46872 * 59.99986 * 17 15 13 19 19 H 1.48497 * 109.47425 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47357 * 300.00162 * 17 15 13 21 21 C 1.50700 * 109.47457 * 84.71869 * 9 8 6 22 22 O 1.21280 * 119.99510 * 23.50825 * 21 9 8 23 23 N 1.34774 * 120.00251 * 203.50241 * 21 9 8 24 24 C 1.47029 * 125.64574 * 184.68478 * 23 21 9 25 25 C 1.54313 * 107.27181 * 180.97436 * 24 23 21 26 26 C 1.55148 * 102.86820 * 22.52489 * 25 24 23 27 27 C 1.47417 * 125.65099 * 4.99840 * 23 21 9 28 28 H 1.09000 * 109.47256 * 299.99857 * 1 2 3 29 29 H 1.09003 * 109.47328 * 60.00368 * 1 2 3 30 30 H 1.09003 * 109.47080 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47217 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47222 * 299.99935 * 3 2 1 33 33 H 1.09001 * 109.47701 * 60.00075 * 3 2 1 34 34 H 1.09003 * 109.46687 * 299.99935 * 4 2 1 35 35 H 1.09003 * 109.47185 * 59.99456 * 4 2 1 36 36 H 1.08999 * 109.47797 * 179.97438 * 4 2 1 37 37 H 0.97007 * 119.99764 * 359.97438 * 8 6 5 38 38 H 1.08994 * 109.47707 * 185.20909 * 11 9 8 39 39 H 1.09006 * 109.46489 * 305.20314 * 11 9 8 40 40 H 1.08995 * 109.47747 * 300.00704 * 12 11 9 41 41 H 1.09006 * 109.46760 * 60.00784 * 12 11 9 42 42 H 0.96992 * 120.00379 * 180.02562 * 16 15 13 43 43 H 1.09005 * 109.87953 * 300.51319 * 24 23 21 44 44 H 1.08994 * 109.88085 * 61.68407 * 24 23 21 45 45 H 1.09004 * 110.92119 * 264.10921 * 25 24 23 46 46 H 1.09003 * 110.58920 * 140.78960 * 25 24 23 47 47 H 1.09003 * 111.01148 * 206.22947 * 26 25 24 48 48 H 1.09000 * 111.00723 * 82.37685 * 26 25 24 49 49 H 1.09001 * 110.36760 * 274.67164 * 27 23 21 50 50 H 1.09007 * 110.36756 * 36.88310 * 27 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0141 -0.6844 1.1856 6 6 1.6523 -1.9722 1.3384 7 8 0.9517 -2.5097 0.5036 8 7 2.0673 -2.6653 2.4172 9 6 1.6788 -4.0683 2.5805 10 1 0.6695 -4.2131 2.1950 11 6 1.7158 -4.4385 4.0645 12 6 0.6507 -3.6380 4.8166 13 6 0.6875 -4.0022 6.2784 14 1 1.3998 -4.7314 6.6355 15 6 -0.1879 -3.4045 7.1601 16 7 -1.0548 -2.5161 6.7255 17 14 -0.1418 -3.8553 8.9723 18 1 1.1988 -3.5382 9.5273 19 1 -1.1756 -3.0784 9.7022 20 1 -0.4112 -5.3074 9.1282 21 6 2.6378 -4.9470 1.8195 22 8 3.7552 -4.5487 1.5670 23 7 2.2539 -6.1755 1.4195 24 6 3.1131 -7.1690 0.7590 25 6 2.2405 -8.4079 0.4675 26 6 0.8030 -7.8242 0.4609 27 6 0.9013 -6.7431 1.5661 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1299 1.4427 0.0005 32 1 1.6765 1.9563 -0.8899 33 1 1.6765 1.9564 0.8900 34 1 1.6767 -1.7489 -1.2491 35 1 1.6767 -0.2074 -2.1392 36 1 3.1301 -0.7208 -1.2494 37 1 2.6269 -2.2364 3.0835 38 1 1.5172 -5.5042 4.1783 39 1 2.6997 -4.2068 4.4723 40 1 0.8493 -2.5723 4.7029 41 1 -0.3333 -3.8697 4.4088 42 1 -1.6705 -2.0954 7.3457 43 1 3.5032 -6.7604 -0.1733 44 1 3.9360 -7.4444 1.4186 45 1 2.3499 -9.1548 1.2538 46 1 2.4892 -8.8316 -0.5056 47 1 0.0703 -8.5869 0.7246 48 1 0.5677 -7.3758 -0.5043 49 1 0.7844 -7.1955 2.5508 50 1 0.1472 -5.9712 1.4121 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496222601.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:08 Heat of formation + Delta-G solvation = -152.390074 kcal Electronic energy + Delta-G solvation = -29584.054086 eV Core-core repulsion = 25610.021317 eV Total energy + Delta-G solvation = -3974.032769 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.05956 -41.11511 -38.91688 -38.05939 -36.82229 -35.35801 -34.83222 -33.10153 -32.42623 -30.18721 -29.03396 -28.37342 -28.30285 -26.12998 -24.55947 -23.48434 -22.42536 -21.89108 -21.13293 -20.39123 -19.37071 -18.76994 -18.08740 -17.84541 -17.38185 -17.07305 -16.84520 -16.43299 -16.05681 -15.63069 -15.35079 -15.18970 -14.78003 -14.52540 -14.46114 -14.29427 -14.23311 -13.86106 -13.65786 -13.35847 -13.26473 -13.15065 -12.92181 -12.87725 -12.83296 -12.65412 -12.56351 -12.50463 -12.34354 -12.21524 -12.09045 -11.87572 -11.75936 -11.56712 -11.42251 -11.36079 -11.17154 -11.15536 -10.53101 -10.14515 -9.74016 -8.17255 -6.28249 1.02322 1.42843 1.45351 1.46090 1.53335 1.61647 2.03627 2.43413 3.12341 3.17078 3.36241 3.65800 3.74020 3.78011 3.79279 3.83217 3.93884 4.00396 4.08318 4.29357 4.44921 4.48690 4.55420 4.60386 4.64247 4.72547 4.74914 4.75537 4.82415 4.85448 4.86311 4.93261 4.98921 5.01139 5.03436 5.10551 5.15960 5.27756 5.30566 5.34217 5.36798 5.50144 5.51783 5.66172 5.83647 6.21585 6.29119 6.34917 6.87413 6.97979 7.25353 7.41114 8.93862 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.007101 B = 0.004900 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3942.216540 B = 5713.388033 C = 8824.812378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.120 3.880 3 C -0.134 4.134 4 C -0.175 4.175 5 O -0.371 6.371 6 C 0.653 3.347 7 O -0.590 6.590 8 N -0.684 5.684 9 C 0.161 3.839 10 H 0.103 0.897 11 C -0.093 4.093 12 C 0.036 3.964 13 C -0.541 4.541 14 H 0.063 0.937 15 C 0.005 3.995 16 N -0.930 5.930 17 Si 0.960 3.040 18 H -0.270 1.270 19 H -0.287 1.287 20 H -0.265 1.265 21 C 0.520 3.480 22 O -0.575 6.575 23 N -0.616 5.616 24 C 0.097 3.903 25 C -0.118 4.118 26 C -0.124 4.124 27 C 0.082 3.918 28 H 0.055 0.945 29 H 0.098 0.902 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.109 0.891 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.098 0.902 36 H 0.057 0.943 37 H 0.414 0.586 38 H 0.088 0.912 39 H 0.065 0.935 40 H 0.000 1.000 41 H -0.004 1.004 42 H 0.263 0.737 43 H 0.055 0.945 44 H 0.064 0.936 45 H 0.093 0.907 46 H 0.102 0.898 47 H 0.112 0.888 48 H 0.074 0.926 49 H 0.086 0.914 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.101 -4.572 -15.973 17.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.084 3.916 3 C -0.191 4.191 4 C -0.232 4.232 5 O -0.286 6.286 6 C 0.407 3.593 7 O -0.481 6.481 8 N -0.341 5.341 9 C 0.053 3.947 10 H 0.121 0.879 11 C -0.131 4.131 12 C -0.002 4.002 13 C -0.579 4.579 14 H 0.081 0.919 15 C -0.193 4.193 16 N -0.570 5.570 17 Si 0.785 3.215 18 H -0.195 1.195 19 H -0.212 1.212 20 H -0.190 1.190 21 C 0.307 3.693 22 O -0.455 6.455 23 N -0.349 5.349 24 C -0.025 4.025 25 C -0.156 4.156 26 C -0.161 4.161 27 C -0.040 4.040 28 H 0.074 0.926 29 H 0.117 0.883 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.128 0.872 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.117 0.883 36 H 0.076 0.924 37 H 0.250 0.750 38 H 0.106 0.894 39 H 0.084 0.916 40 H 0.018 0.982 41 H 0.015 0.985 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.082 0.918 45 H 0.112 0.888 46 H 0.120 0.880 47 H 0.131 0.869 48 H 0.092 0.908 49 H 0.104 0.896 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.228 -4.364 -16.487 17.571 hybrid contribution 0.080 0.345 1.325 1.372 sum 4.308 -4.019 -15.162 16.266 Atomic orbital electron populations 1.22473 0.93938 1.03641 1.03592 1.22519 0.94747 0.92940 0.81392 1.21890 1.02389 0.90381 1.04462 1.22436 1.01338 1.02033 0.97438 1.86324 1.71517 1.22826 1.47889 1.18114 0.78383 0.80970 0.81840 1.90829 1.42346 1.71139 1.43816 1.44382 1.55153 1.11047 1.23552 1.20896 0.97529 0.78494 0.97741 0.87902 1.21689 1.01106 1.01816 0.88505 1.18904 0.92720 0.94538 0.93998 1.21576 1.18305 1.23955 0.94039 0.91853 1.25881 0.94968 0.94850 1.03591 1.70090 1.21593 1.28633 1.36695 0.85576 0.77888 0.78661 0.79372 1.19462 1.21227 1.18967 1.20944 0.88043 0.81447 0.78831 1.90625 1.23051 1.73570 1.58282 1.48586 1.13806 1.13822 1.58736 1.22143 0.94381 0.89121 0.96828 1.22651 0.93463 0.95084 1.04359 1.22791 0.98053 0.97429 0.97867 1.22740 0.82467 0.97400 1.01384 0.92559 0.88287 0.92190 0.91242 0.87224 0.91520 0.92435 0.88302 0.92395 0.74994 0.89365 0.91643 0.98189 0.98525 0.92872 0.92654 0.91789 0.88825 0.87958 0.86943 0.90753 0.89610 0.91067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.84 8.37 71.98 0.60 -4.24 16 2 C 0.12 3.28 1.13 -10.80 -0.01 3.27 16 3 C -0.13 -2.63 8.85 71.98 0.64 -1.99 16 4 C -0.18 -4.53 8.37 71.98 0.60 -3.92 16 5 O -0.37 -13.05 9.94 -55.47 -0.55 -13.60 16 6 C 0.65 25.63 8.01 129.79 1.04 26.67 16 7 O -0.59 -24.23 11.55 19.80 0.23 -24.00 16 8 N -0.68 -26.57 4.15 -573.74 -2.38 -28.95 16 9 C 0.16 6.06 1.89 44.25 0.08 6.14 16 10 H 0.10 3.96 6.18 -2.38 -0.01 3.94 16 11 C -0.09 -3.66 4.67 30.59 0.14 -3.52 16 12 C 0.04 1.77 4.86 29.85 0.15 1.92 16 13 C -0.54 -29.24 9.11 25.60 0.23 -29.01 16 14 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 15 C 0.01 0.30 5.46 84.65 0.46 0.76 16 16 N -0.93 -55.22 13.29 21.45 0.28 -54.93 16 17 Si 0.96 42.98 29.54 68.60 2.03 45.00 16 18 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 19 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 20 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 21 C 0.52 19.15 7.02 87.66 0.62 19.76 16 22 O -0.58 -24.64 16.93 -3.03 -0.05 -24.69 16 23 N -0.62 -17.99 3.33 -811.80 -2.70 -20.69 16 24 C 0.10 2.27 6.87 86.72 0.60 2.86 16 25 C -0.12 -1.67 6.95 31.78 0.22 -1.45 16 26 C -0.12 -1.89 7.08 31.98 0.23 -1.67 16 27 C 0.08 1.88 6.63 86.86 0.58 2.45 16 28 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.06 1.98 5.88 -2.39 -0.01 1.97 16 31 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 32 H 0.11 1.45 8.14 -2.39 -0.02 1.44 16 33 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.06 1.85 5.88 -2.39 -0.01 1.84 16 35 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.06 1.47 8.14 -2.39 -0.02 1.46 16 37 H 0.41 15.50 8.71 -92.70 -0.81 14.69 16 38 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 39 H 0.06 2.58 8.14 -2.38 -0.02 2.56 16 40 H 0.00 -0.02 7.76 -2.39 -0.02 -0.03 16 41 H 0.00 -0.20 8.14 -2.38 -0.02 -0.22 16 42 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 43 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 44 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 45 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 47 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 48 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 49 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 50 H 0.07 1.80 6.92 -2.38 -0.02 1.78 16 Total: -1.00 -73.61 401.12 3.14 -70.47 By element: Atomic # 1 Polarization: 33.23 SS G_CDS: 0.11 Total: 33.34 kcal Atomic # 6 Polarization: 11.86 SS G_CDS: 6.17 Total: 18.03 kcal Atomic # 7 Polarization: -99.77 SS G_CDS: -4.80 Total: -104.57 kcal Atomic # 8 Polarization: -61.91 SS G_CDS: -0.37 Total: -62.28 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.00 kcal Total: -73.61 3.14 -70.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496222601.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.919 kcal (2) G-P(sol) polarization free energy of solvation -73.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds