Wall clock time and date at job start Tue Mar 31 2020 15:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47247 * 2 1 4 4 C 1.52994 * 109.47402 * 239.99840 * 2 1 3 5 5 O 1.45198 * 109.47287 * 119.99723 * 2 1 3 6 6 C 1.34637 * 116.99878 * 59.99901 * 5 2 1 7 7 O 1.21512 * 120.00015 * 0.02562 * 6 5 2 8 8 N 1.34773 * 120.00056 * 180.27594 * 6 5 2 9 9 C 1.46503 * 120.00106 * 179.72320 * 8 6 5 10 10 H 1.08999 * 109.47136 * 35.00110 * 9 8 6 11 11 C 1.53005 * 109.46949 * 155.00149 * 9 8 6 12 12 C 1.52997 * 109.47021 * 295.50525 * 11 9 8 13 13 C 1.50703 * 109.46799 * 180.02562 * 12 11 9 14 14 H 1.07995 * 119.99862 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99553 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99825 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 120.00369 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.46833 * 90.00309 * 17 15 13 19 19 H 1.48497 * 109.46935 * 209.99859 * 17 15 13 20 20 H 1.48494 * 109.46756 * 330.00088 * 17 15 13 21 21 C 1.50700 * 109.47391 * 275.00235 * 9 8 6 22 22 O 1.21284 * 119.99747 * 333.03430 * 21 9 8 23 23 N 1.34770 * 120.00214 * 153.03468 * 21 9 8 24 24 C 1.47025 * 125.64686 * 4.59768 * 23 21 9 25 25 C 1.54317 * 107.27851 * 180.97106 * 24 23 21 26 26 C 1.55163 * 102.86142 * 22.52658 * 25 24 23 27 27 C 1.47424 * 125.65170 * 184.91352 * 23 21 9 28 28 H 1.09003 * 109.47212 * 300.00106 * 1 2 3 29 29 H 1.08994 * 109.47115 * 60.00042 * 1 2 3 30 30 H 1.08995 * 109.47025 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47207 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.46664 * 299.99999 * 3 2 1 33 33 H 1.09003 * 109.47101 * 59.99825 * 3 2 1 34 34 H 1.09000 * 109.47208 * 300.00386 * 4 2 1 35 35 H 1.09001 * 109.47082 * 59.99651 * 4 2 1 36 36 H 1.09003 * 109.47495 * 179.97438 * 4 2 1 37 37 H 0.96998 * 120.00330 * 359.72970 * 8 6 5 38 38 H 1.09002 * 109.47109 * 55.50763 * 11 9 8 39 39 H 1.08998 * 109.47021 * 175.50631 * 11 9 8 40 40 H 1.09002 * 109.47373 * 300.00076 * 12 11 9 41 41 H 1.08998 * 109.47136 * 60.00177 * 12 11 9 42 42 H 0.96999 * 120.00368 * 179.97438 * 16 15 13 43 43 H 1.09000 * 109.88581 * 300.51609 * 24 23 21 44 44 H 1.09001 * 109.87963 * 61.68585 * 24 23 21 45 45 H 1.09002 * 110.92564 * 264.11640 * 25 24 23 46 46 H 1.08992 * 110.59224 * 140.78434 * 25 24 23 47 47 H 1.08993 * 111.00809 * 206.23213 * 26 25 24 48 48 H 1.08998 * 110.99976 * 82.37608 * 26 25 24 49 49 H 1.09004 * 110.36445 * 274.66816 * 27 23 21 50 50 H 1.09000 * 110.36645 * 36.88085 * 27 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2491 5 8 2.0140 -0.6844 1.1856 6 6 1.6523 -1.9722 1.3384 7 8 0.9516 -2.5097 0.5037 8 7 2.0631 -2.6638 2.4197 9 6 1.6644 -4.0633 2.5891 10 1 1.6183 -4.5485 1.6141 11 6 2.6890 -4.7826 3.4688 12 6 4.0402 -4.8191 2.7521 13 6 5.0492 -5.5281 3.6184 14 1 4.7561 -5.9136 4.5837 15 6 6.3468 -5.6836 3.1790 16 7 7.2275 -6.3019 3.9351 17 14 6.8540 -5.0161 1.5096 18 1 7.3355 -3.6195 1.6605 19 1 7.9424 -5.8572 0.9501 20 1 5.6872 -5.0411 0.5913 21 6 0.3089 -4.1238 3.2448 22 8 -0.0565 -3.2201 3.9664 23 7 -0.4974 -5.1820 3.0293 24 6 -0.1459 -6.3842 2.2594 25 6 -1.3822 -7.3078 2.2619 26 6 -2.5479 -6.3237 2.5450 27 6 -1.8801 -5.3230 3.5208 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6767 -1.7489 -1.2492 35 1 1.6767 -0.2075 -2.1392 36 1 3.1301 -0.7209 -1.2494 37 1 2.6226 -2.2350 3.0860 38 1 2.7934 -4.2503 4.4143 39 1 2.3518 -5.8012 3.6606 40 1 3.9358 -5.3514 1.8067 41 1 4.3774 -3.8005 2.5603 42 1 8.1403 -6.4116 3.6259 43 1 0.1105 -6.1078 1.2367 44 1 0.6954 -6.8930 2.7301 45 1 -1.3081 -8.0553 3.0519 46 1 -1.5070 -7.7839 1.2895 47 1 -3.3841 -6.8352 3.0216 48 1 -2.8676 -5.8236 1.6308 49 1 -1.8832 -5.7226 4.5350 50 1 -2.3931 -4.3617 3.4911 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496222602.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:13 Heat of formation + Delta-G solvation = -128.177079 kcal Electronic energy + Delta-G solvation = -29709.566375 eV Core-core repulsion = 25736.583560 eV Total energy + Delta-G solvation = -3972.982815 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.80336 -39.93217 -37.82849 -36.85733 -35.36701 -34.09868 -33.06539 -31.88470 -31.15587 -29.24546 -27.80101 -27.46577 -27.40401 -24.50383 -23.28533 -22.12890 -21.24886 -20.46273 -19.93281 -19.20374 -18.13494 -17.34899 -16.74978 -16.56083 -16.43427 -15.90785 -15.44260 -14.80839 -14.54557 -14.32829 -14.27081 -14.01400 -13.64495 -13.51661 -13.42873 -13.01585 -12.81990 -12.70421 -12.55721 -12.35021 -12.23350 -11.98690 -11.92711 -11.86138 -11.52100 -11.51794 -11.37207 -11.31339 -11.17067 -11.04232 -10.88399 -10.41757 -10.32132 -10.19121 -9.93056 -9.86249 -9.78102 -9.29226 -8.82078 -8.59663 -8.57887 -6.10481 -4.09843 2.20967 2.79368 2.88766 3.20752 3.27446 3.35436 3.38898 4.28122 4.36543 4.39981 4.46425 4.67840 4.72190 4.75799 4.86314 4.87080 5.13340 5.19536 5.23975 5.25666 5.39115 5.42360 5.47221 5.55162 5.56665 5.59367 5.62106 5.71299 5.71715 5.73193 5.81973 5.82672 5.91342 5.98128 6.02037 6.20777 6.25602 6.26831 6.34470 6.48181 6.60227 6.66691 7.12797 7.24254 7.53274 7.60896 7.70078 8.26883 8.44619 8.55332 8.93450 9.51348 11.02575 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.006851 B = 0.005646 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4085.728247 B = 4957.977161 C = 8131.056258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.136 3.864 3 C -0.140 4.140 4 C -0.184 4.184 5 O -0.362 6.362 6 C 0.656 3.344 7 O -0.575 6.575 8 N -0.681 5.681 9 C 0.150 3.850 10 H 0.109 0.891 11 C -0.104 4.104 12 C -0.009 4.009 13 C -0.523 4.523 14 H 0.073 0.927 15 C 0.070 3.930 16 N -0.900 5.900 17 Si 0.876 3.124 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.265 1.265 21 C 0.525 3.475 22 O -0.538 6.538 23 N -0.617 5.617 24 C 0.092 3.908 25 C -0.130 4.130 26 C -0.133 4.133 27 C 0.106 3.894 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.088 0.912 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.414 0.586 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.019 0.981 41 H 0.016 0.984 42 H 0.264 0.736 43 H 0.073 0.927 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.082 0.918 47 H 0.082 0.918 48 H 0.075 0.925 49 H 0.067 0.933 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.354 6.087 -8.120 20.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.099 3.901 3 C -0.198 4.198 4 C -0.241 4.241 5 O -0.277 6.277 6 C 0.410 3.590 7 O -0.465 6.465 8 N -0.339 5.339 9 C 0.043 3.957 10 H 0.127 0.873 11 C -0.142 4.142 12 C -0.047 4.047 13 C -0.561 4.561 14 H 0.092 0.908 15 C -0.131 4.131 16 N -0.539 5.539 17 Si 0.704 3.296 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.190 1.190 21 C 0.312 3.688 22 O -0.414 6.414 23 N -0.353 5.353 24 C -0.031 4.031 25 C -0.168 4.168 26 C -0.172 4.172 27 C -0.017 4.017 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.106 0.894 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.107 0.893 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.250 0.750 38 H 0.090 0.910 39 H 0.098 0.902 40 H 0.037 0.963 41 H 0.035 0.965 42 H 0.074 0.926 43 H 0.091 0.909 44 H 0.097 0.903 45 H 0.097 0.903 46 H 0.101 0.899 47 H 0.101 0.899 48 H 0.094 0.906 49 H 0.085 0.915 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -17.637 6.404 -8.168 20.464 hybrid contribution 0.643 0.455 -0.603 0.992 sum -16.994 6.859 -8.771 20.317 Atomic orbital electron populations 1.22498 0.94178 1.05036 1.02184 1.22029 0.94237 0.91520 0.82317 1.21855 1.02374 0.92623 1.02908 1.22523 1.01749 1.03563 0.96275 1.86313 1.71604 1.23570 1.46176 1.18010 0.78394 0.80442 0.82198 1.90852 1.41497 1.70369 1.43784 1.44363 1.54328 1.11796 1.23385 1.21097 0.91481 0.81219 1.01943 0.87339 1.21796 0.94815 0.99454 0.98182 1.19576 0.91646 0.97137 0.96315 1.21048 0.93636 1.36798 1.04635 0.90846 1.24987 0.96513 0.94616 0.97020 1.69905 1.03995 1.42598 1.37379 0.86832 0.78563 0.79216 0.85031 1.20207 1.21332 1.18976 1.21007 0.86427 0.80408 0.80915 1.90666 1.75432 1.37484 1.37827 1.48451 1.14390 1.18608 1.53853 1.22185 0.98543 0.85568 0.96766 1.22629 0.93723 0.97418 1.03040 1.22787 0.97719 0.96834 0.99816 1.22185 0.82102 0.99865 0.97504 0.92250 0.91383 0.89420 0.91375 0.90319 0.91490 0.89274 0.91368 0.92044 0.74970 0.90956 0.90195 0.96279 0.96533 0.92639 0.90885 0.90346 0.90303 0.89915 0.89894 0.90644 0.91506 0.90780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.25 8.37 37.16 0.31 -1.94 16 2 C 0.14 1.75 1.13 -90.62 -0.10 1.65 16 3 C -0.14 -1.38 8.85 37.16 0.33 -1.05 16 4 C -0.18 -2.31 8.37 37.15 0.31 -2.00 16 5 O -0.36 -5.79 9.94 -40.32 -0.40 -6.19 16 6 C 0.66 11.55 8.01 54.05 0.43 11.98 16 7 O -0.57 -10.62 11.54 -19.28 -0.22 -10.84 16 8 N -0.68 -11.83 4.15 -59.86 -0.25 -12.08 16 9 C 0.15 2.58 1.87 -69.08 -0.13 2.45 16 10 H 0.11 1.85 6.63 -51.93 -0.34 1.50 16 11 C -0.10 -1.93 4.68 -26.73 -0.13 -2.05 16 12 C -0.01 -0.21 3.92 -27.88 -0.11 -0.32 16 13 C -0.52 -14.21 9.66 -34.44 -0.33 -14.54 16 14 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 15 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 16 N -0.90 -27.08 13.96 55.43 0.77 -26.30 16 17 Si 0.88 21.29 27.47 -169.99 -4.67 16.62 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 21 C 0.52 9.09 7.00 -10.99 -0.08 9.01 16 22 O -0.54 -10.84 16.94 5.55 0.09 -10.75 16 23 N -0.62 -8.74 3.33 -170.52 -0.57 -9.31 16 24 C 0.09 1.05 6.29 -3.07 -0.02 1.03 16 25 C -0.13 -1.09 6.95 -24.90 -0.17 -1.26 16 26 C -0.13 -1.12 7.08 -24.58 -0.17 -1.30 16 27 C 0.11 1.24 6.89 -2.53 -0.02 1.22 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.09 1.31 5.88 -51.93 -0.31 1.00 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.09 1.33 5.88 -51.93 -0.31 1.02 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.41 6.82 8.71 -40.82 -0.36 6.47 16 38 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.08 1.41 7.35 -51.93 -0.38 1.03 16 40 H 0.02 0.43 7.20 -51.93 -0.37 0.05 16 41 H 0.02 0.37 7.16 -51.93 -0.37 0.00 16 42 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 43 H 0.07 0.84 7.68 -51.93 -0.40 0.44 16 44 H 0.08 0.90 7.36 -51.93 -0.38 0.52 16 45 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 46 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 49 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 50 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 LS Contribution 396.71 15.07 5.98 5.98 Total: -1.00 -33.67 396.71 -7.96 -41.62 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -8.72 Total: 6.46 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: 0.03 Total: 4.79 kcal Atomic # 7 Polarization: -47.65 SS G_CDS: -0.04 Total: -47.69 kcal Atomic # 8 Polarization: -27.25 SS G_CDS: -0.53 Total: -27.78 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.67 Total: 16.62 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.67 -7.96 -41.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496222602.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.556 kcal (2) G-P(sol) polarization free energy of solvation -33.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds