Wall clock time and date at job start Tue Mar 31 2020 15:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47247 * 2 1 4 4 C 1.52994 * 109.47402 * 239.99840 * 2 1 3 5 5 O 1.45198 * 109.47287 * 119.99723 * 2 1 3 6 6 C 1.34637 * 116.99878 * 59.99901 * 5 2 1 7 7 O 1.21512 * 120.00015 * 0.02562 * 6 5 2 8 8 N 1.34773 * 120.00056 * 180.27594 * 6 5 2 9 9 C 1.46503 * 120.00106 * 179.72320 * 8 6 5 10 10 H 1.08999 * 109.47136 * 35.00110 * 9 8 6 11 11 C 1.53005 * 109.46949 * 155.00149 * 9 8 6 12 12 C 1.52997 * 109.47021 * 295.50525 * 11 9 8 13 13 C 1.50703 * 109.46799 * 180.02562 * 12 11 9 14 14 H 1.07995 * 119.99862 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99553 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99825 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 120.00369 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.46833 * 90.00309 * 17 15 13 19 19 H 1.48497 * 109.46935 * 209.99859 * 17 15 13 20 20 H 1.48494 * 109.46756 * 330.00088 * 17 15 13 21 21 C 1.50700 * 109.47391 * 275.00235 * 9 8 6 22 22 O 1.21284 * 119.99747 * 333.03430 * 21 9 8 23 23 N 1.34770 * 120.00214 * 153.03468 * 21 9 8 24 24 C 1.47025 * 125.64686 * 4.59768 * 23 21 9 25 25 C 1.54317 * 107.27851 * 180.97106 * 24 23 21 26 26 C 1.55163 * 102.86142 * 22.52658 * 25 24 23 27 27 C 1.47424 * 125.65170 * 184.91352 * 23 21 9 28 28 H 1.09003 * 109.47212 * 300.00106 * 1 2 3 29 29 H 1.08994 * 109.47115 * 60.00042 * 1 2 3 30 30 H 1.08995 * 109.47025 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47207 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.46664 * 299.99999 * 3 2 1 33 33 H 1.09003 * 109.47101 * 59.99825 * 3 2 1 34 34 H 1.09000 * 109.47208 * 300.00386 * 4 2 1 35 35 H 1.09001 * 109.47082 * 59.99651 * 4 2 1 36 36 H 1.09003 * 109.47495 * 179.97438 * 4 2 1 37 37 H 0.96998 * 120.00330 * 359.72970 * 8 6 5 38 38 H 1.09002 * 109.47109 * 55.50763 * 11 9 8 39 39 H 1.08998 * 109.47021 * 175.50631 * 11 9 8 40 40 H 1.09002 * 109.47373 * 300.00076 * 12 11 9 41 41 H 1.08998 * 109.47136 * 60.00177 * 12 11 9 42 42 H 0.96999 * 120.00368 * 179.97438 * 16 15 13 43 43 H 1.09000 * 109.88581 * 300.51609 * 24 23 21 44 44 H 1.09001 * 109.87963 * 61.68585 * 24 23 21 45 45 H 1.09002 * 110.92564 * 264.11640 * 25 24 23 46 46 H 1.08992 * 110.59224 * 140.78434 * 25 24 23 47 47 H 1.08993 * 111.00809 * 206.23213 * 26 25 24 48 48 H 1.08998 * 110.99976 * 82.37608 * 26 25 24 49 49 H 1.09004 * 110.36445 * 274.66816 * 27 23 21 50 50 H 1.09000 * 110.36645 * 36.88085 * 27 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2491 5 8 2.0140 -0.6844 1.1856 6 6 1.6523 -1.9722 1.3384 7 8 0.9516 -2.5097 0.5037 8 7 2.0631 -2.6638 2.4197 9 6 1.6644 -4.0633 2.5891 10 1 1.6183 -4.5485 1.6141 11 6 2.6890 -4.7826 3.4688 12 6 4.0402 -4.8191 2.7521 13 6 5.0492 -5.5281 3.6184 14 1 4.7561 -5.9136 4.5837 15 6 6.3468 -5.6836 3.1790 16 7 7.2275 -6.3019 3.9351 17 14 6.8540 -5.0161 1.5096 18 1 7.3355 -3.6195 1.6605 19 1 7.9424 -5.8572 0.9501 20 1 5.6872 -5.0411 0.5913 21 6 0.3089 -4.1238 3.2448 22 8 -0.0565 -3.2201 3.9664 23 7 -0.4974 -5.1820 3.0293 24 6 -0.1459 -6.3842 2.2594 25 6 -1.3822 -7.3078 2.2619 26 6 -2.5479 -6.3237 2.5450 27 6 -1.8801 -5.3230 3.5208 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6767 -1.7489 -1.2492 35 1 1.6767 -0.2075 -2.1392 36 1 3.1301 -0.7209 -1.2494 37 1 2.6226 -2.2350 3.0860 38 1 2.7934 -4.2503 4.4143 39 1 2.3518 -5.8012 3.6606 40 1 3.9358 -5.3514 1.8067 41 1 4.3774 -3.8005 2.5603 42 1 8.1403 -6.4116 3.6259 43 1 0.1105 -6.1078 1.2367 44 1 0.6954 -6.8930 2.7301 45 1 -1.3081 -8.0553 3.0519 46 1 -1.5070 -7.7839 1.2895 47 1 -3.3841 -6.8352 3.0216 48 1 -2.8676 -5.8236 1.6308 49 1 -1.8832 -5.7226 4.5350 50 1 -2.3931 -4.3617 3.4911 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496222602.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:12 Heat of formation + Delta-G solvation = -150.381239 kcal Electronic energy + Delta-G solvation = -29710.529220 eV Core-core repulsion = 25736.583560 eV Total energy + Delta-G solvation = -3973.945660 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.07992 -41.12614 -38.93492 -38.07628 -36.86954 -35.35849 -34.82717 -33.21923 -32.60330 -30.26626 -29.30188 -28.37713 -28.30738 -26.08549 -24.51268 -23.38220 -22.27358 -21.92655 -21.15393 -20.41719 -19.41711 -19.02719 -18.26913 -17.86874 -17.44072 -17.15483 -16.63127 -16.31747 -16.01011 -15.78214 -15.35096 -15.29800 -14.81994 -14.74381 -14.52951 -14.40658 -14.17797 -13.95700 -13.73683 -13.37099 -13.27082 -13.18131 -13.00644 -12.93266 -12.88258 -12.76925 -12.57326 -12.35322 -12.21068 -12.19440 -12.05152 -11.91686 -11.73310 -11.57108 -11.44204 -11.39654 -11.30812 -11.16631 -10.76421 -10.19224 -9.72609 -8.28603 -6.32410 0.97837 1.35938 1.37666 1.45392 1.48422 1.60459 2.02314 2.35403 3.07278 3.10742 3.33228 3.66453 3.73191 3.75754 3.78598 3.81112 3.93332 3.95566 4.07293 4.28385 4.41095 4.47529 4.52870 4.60356 4.62445 4.63330 4.72623 4.74834 4.82423 4.84363 4.86114 4.92033 4.93142 4.97116 4.99207 5.11004 5.15344 5.25833 5.27223 5.32938 5.33759 5.38179 5.45123 5.51133 5.62384 6.26211 6.27175 6.35536 6.75237 6.97056 7.23220 7.32151 8.87805 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.006851 B = 0.005646 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4085.728247 B = 4957.977161 C = 8131.056258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.120 3.880 3 C -0.135 4.135 4 C -0.180 4.180 5 O -0.370 6.370 6 C 0.653 3.347 7 O -0.587 6.587 8 N -0.686 5.686 9 C 0.160 3.840 10 H 0.112 0.888 11 C -0.091 4.091 12 C -0.002 4.002 13 C -0.527 4.527 14 H 0.039 0.961 15 C 0.012 3.988 16 N -0.947 5.947 17 Si 0.940 3.060 18 H -0.270 1.270 19 H -0.284 1.284 20 H -0.249 1.249 21 C 0.519 3.481 22 O -0.575 6.575 23 N -0.616 5.616 24 C 0.081 3.919 25 C -0.121 4.121 26 C -0.121 4.121 27 C 0.096 3.904 28 H 0.056 0.944 29 H 0.097 0.903 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.108 0.892 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.097 0.903 36 H 0.058 0.942 37 H 0.416 0.584 38 H 0.064 0.936 39 H 0.087 0.913 40 H 0.025 0.975 41 H 0.020 0.980 42 H 0.266 0.734 43 H 0.072 0.928 44 H 0.076 0.924 45 H 0.090 0.910 46 H 0.103 0.897 47 H 0.111 0.889 48 H 0.075 0.925 49 H 0.073 0.927 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.732 6.604 -10.409 22.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.084 3.916 3 C -0.192 4.192 4 C -0.237 4.237 5 O -0.285 6.285 6 C 0.406 3.594 7 O -0.478 6.478 8 N -0.345 5.345 9 C 0.052 3.948 10 H 0.130 0.870 11 C -0.129 4.129 12 C -0.040 4.040 13 C -0.565 4.565 14 H 0.057 0.943 15 C -0.185 4.185 16 N -0.588 5.588 17 Si 0.764 3.236 18 H -0.195 1.195 19 H -0.210 1.210 20 H -0.172 1.172 21 C 0.306 3.694 22 O -0.455 6.455 23 N -0.350 5.350 24 C -0.041 4.041 25 C -0.159 4.159 26 C -0.159 4.159 27 C -0.026 4.026 28 H 0.075 0.925 29 H 0.116 0.884 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.126 0.874 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.115 0.885 36 H 0.077 0.923 37 H 0.252 0.748 38 H 0.082 0.918 39 H 0.106 0.894 40 H 0.043 0.957 41 H 0.038 0.962 42 H 0.075 0.925 43 H 0.091 0.909 44 H 0.095 0.905 45 H 0.109 0.891 46 H 0.122 0.878 47 H 0.129 0.871 48 H 0.093 0.907 49 H 0.091 0.909 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -19.047 6.899 -10.475 22.805 hybrid contribution 1.014 0.274 0.158 1.063 sum -18.032 7.173 -10.317 21.978 Atomic orbital electron populations 1.22443 0.93896 1.03486 1.03526 1.22516 0.94717 0.92892 0.81438 1.21895 1.02401 0.90468 1.04443 1.22480 1.01545 1.02298 0.97357 1.86330 1.71691 1.22661 1.47795 1.18116 0.78259 0.81006 0.81973 1.90844 1.41963 1.70831 1.44167 1.44426 1.54489 1.11940 1.23601 1.20906 0.91174 0.81180 1.01506 0.87044 1.21559 0.93530 1.00179 0.97639 1.19456 0.92199 0.96494 0.95839 1.21364 0.94830 1.36387 1.03928 0.94307 1.25858 0.96612 0.95022 1.01001 1.70047 1.04560 1.44561 1.39641 0.85804 0.78676 0.78628 0.80442 1.19514 1.20980 1.17240 1.20957 0.86772 0.80901 0.80734 1.90637 1.76225 1.39080 1.39562 1.48595 1.15013 1.18330 1.53071 1.22457 1.00359 0.85086 0.96221 1.22657 0.91647 0.96836 1.04733 1.22778 0.98248 0.95864 0.99010 1.22439 0.80920 1.00305 0.98955 0.92514 0.88414 0.92304 0.91364 0.87356 0.91370 0.91949 0.88464 0.92258 0.74778 0.91756 0.89416 0.95705 0.96159 0.92499 0.90921 0.90544 0.89094 0.87833 0.87113 0.90655 0.90877 0.92262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.13 8.37 71.98 0.60 -3.53 16 2 C 0.12 2.93 1.13 -10.79 -0.01 2.92 16 3 C -0.14 -2.32 8.85 71.98 0.64 -1.68 16 4 C -0.18 -4.20 8.37 71.98 0.60 -3.60 16 5 O -0.37 -11.68 9.94 -55.47 -0.55 -12.23 16 6 C 0.65 23.00 8.01 129.79 1.04 24.04 16 7 O -0.59 -21.75 11.54 19.80 0.23 -21.52 16 8 N -0.69 -24.02 4.15 -573.72 -2.38 -26.40 16 9 C 0.16 5.50 1.87 44.25 0.08 5.59 16 10 H 0.11 3.76 6.63 -2.39 -0.02 3.74 16 11 C -0.09 -3.39 4.68 30.59 0.14 -3.24 16 12 C 0.00 -0.11 3.92 29.85 0.12 0.01 16 13 C -0.53 -29.09 9.66 25.60 0.25 -28.84 16 14 H 0.04 2.35 7.99 -2.91 -0.02 2.33 16 15 C 0.01 0.71 5.47 84.65 0.46 1.17 16 16 N -0.95 -58.17 13.96 21.45 0.30 -57.87 16 17 Si 0.94 43.56 27.47 68.60 1.88 45.45 16 18 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 19 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 20 H -0.25 -10.77 6.54 99.48 0.65 -10.12 16 21 C 0.52 18.17 7.00 87.66 0.61 18.78 16 22 O -0.58 -23.77 16.94 -3.04 -0.05 -23.82 16 23 N -0.62 -17.18 3.33 -811.80 -2.70 -19.88 16 24 C 0.08 1.74 6.29 86.73 0.55 2.28 16 25 C -0.12 -1.67 6.95 31.78 0.22 -1.45 16 26 C -0.12 -1.72 7.08 31.99 0.23 -1.49 16 27 C 0.10 2.15 6.89 86.86 0.60 2.74 16 28 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.06 1.74 5.88 -2.39 -0.01 1.73 16 31 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.06 1.81 5.88 -2.39 -0.01 1.80 16 35 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.42 13.92 8.71 -92.71 -0.81 13.11 16 38 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 39 H 0.09 3.10 7.35 -2.39 -0.02 3.08 16 40 H 0.02 1.08 7.20 -2.39 -0.02 1.06 16 41 H 0.02 0.89 7.16 -2.39 -0.02 0.87 16 42 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 43 H 0.07 1.58 7.68 -2.39 -0.02 1.56 16 44 H 0.08 1.68 7.36 -2.39 -0.02 1.66 16 45 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 47 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 48 H 0.07 1.10 8.14 -2.39 -0.02 1.09 16 49 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 50 H 0.06 1.50 8.08 -2.39 -0.02 1.48 16 Total: -1.00 -74.75 396.71 2.92 -71.83 By element: Atomic # 1 Polarization: 30.69 SS G_CDS: 0.06 Total: 30.75 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: 6.13 Total: 13.69 kcal Atomic # 7 Polarization: -99.37 SS G_CDS: -4.78 Total: -104.15 kcal Atomic # 8 Polarization: -57.20 SS G_CDS: -0.37 Total: -57.57 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 1.88 Total: 45.45 kcal Total: -74.75 2.92 -71.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496222602.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.546 kcal (2) G-P(sol) polarization free energy of solvation -74.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds