Wall clock time and date at job start Tue Mar 31 2020 14:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34770 * 119.99711 * 2 1 4 4 O 1.21283 * 120.00059 * 180.02562 * 3 2 1 5 5 C 1.50697 * 120.00483 * 0.02562 * 3 2 1 6 6 C 1.52996 * 109.47491 * 179.97438 * 5 3 2 7 7 C 1.50702 * 109.47159 * 179.97438 * 6 5 3 8 8 H 1.08002 * 120.00299 * 0.02562 * 7 6 5 9 9 C 1.37884 * 119.99942 * 179.72211 * 7 6 5 10 10 N 1.31514 * 119.99698 * 0.28408 * 9 7 6 11 11 Si 1.86794 * 119.99837 * 180.27476 * 9 7 6 12 12 H 1.48504 * 109.47196 * 60.00645 * 11 9 7 13 13 H 1.48504 * 109.46887 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47679 * 300.00280 * 11 9 7 15 15 C 1.46493 * 119.99897 * 180.02562 * 2 1 3 16 16 H 1.09004 * 110.88574 * 176.11809 * 15 2 1 17 17 C 1.55160 * 111.00492 * 299.99347 * 15 2 1 18 18 C 1.54321 * 102.94166 * 153.57739 * 17 15 2 19 19 N 1.47025 * 107.27581 * 337.81242 * 18 17 15 20 20 C 1.34773 * 125.65054 * 178.96476 * 19 18 17 21 21 O 1.21509 * 119.99996 * 179.97438 * 20 19 18 22 22 O 1.34637 * 119.99936 * 359.96758 * 20 19 18 23 23 C 1.45201 * 116.99546 * 180.02562 * 22 20 19 24 24 C 1.52998 * 109.47488 * 60.00260 * 23 22 20 25 25 C 1.53007 * 109.46776 * 179.97438 * 23 22 20 26 26 C 1.52995 * 109.47160 * 299.99791 * 23 22 20 27 27 C 1.47430 * 108.69751 * 358.93826 * 19 18 17 28 28 H 1.08997 * 109.47508 * 89.99709 * 1 2 3 29 29 H 1.09002 * 109.46900 * 209.99892 * 1 2 3 30 30 H 1.09003 * 109.47017 * 329.99484 * 1 2 3 31 31 H 1.09004 * 109.46801 * 59.99704 * 5 3 2 32 32 H 1.09000 * 109.47461 * 300.00236 * 5 3 2 33 33 H 1.09004 * 109.47066 * 60.00201 * 6 5 3 34 34 H 1.08994 * 109.47405 * 300.00031 * 6 5 3 35 35 H 0.97005 * 119.99651 * 179.97438 * 10 9 7 36 36 H 1.08999 * 110.72133 * 271.94169 * 17 15 2 37 37 H 1.09003 * 110.71514 * 35.04070 * 17 15 2 38 38 H 1.09007 * 109.88384 * 97.22699 * 18 17 15 39 39 H 1.09001 * 109.88533 * 218.38836 * 18 17 15 40 40 H 1.09007 * 109.47171 * 59.99516 * 24 23 22 41 41 H 1.09000 * 109.47067 * 179.97438 * 24 23 22 42 42 H 1.09003 * 109.47132 * 300.00031 * 24 23 22 43 43 H 1.09000 * 109.46930 * 59.99738 * 25 23 22 44 44 H 1.09000 * 109.47317 * 179.97438 * 25 23 22 45 45 H 1.08998 * 109.47149 * 300.00305 * 25 23 22 46 46 H 1.08995 * 109.46914 * 60.00634 * 26 23 22 47 47 H 1.09006 * 109.47216 * 180.02562 * 26 23 22 48 48 H 1.08996 * 109.47583 * 300.00038 * 26 23 22 49 49 H 1.09004 * 110.36532 * 265.28834 * 27 19 18 50 50 H 1.09003 * 110.36386 * 142.97305 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 0.0006 6 6 2.3796 3.6352 0.0011 7 6 1.6260 4.9403 0.0011 8 1 0.5460 4.9403 0.0011 9 6 2.3154 6.1344 0.0073 10 7 3.6306 6.1344 0.0076 11 14 1.3814 7.7520 0.0150 12 1 0.5272 7.8247 1.2276 13 1 2.3464 8.8808 0.0203 14 1 0.5280 7.8368 -1.1974 15 6 2.1975 -1.2687 -0.0006 16 1 3.2718 -1.0972 -0.0694 17 6 1.8485 -2.1129 1.2536 18 6 2.1064 -3.5588 0.7797 19 7 2.0265 -3.5578 -0.6884 20 6 2.2134 -4.6281 -1.4859 21 8 2.1222 -4.5104 -2.6919 22 8 2.5014 -5.8275 -0.9464 23 6 2.6903 -6.9355 -1.8657 24 6 3.8508 -6.6211 -2.8118 25 6 3.0079 -8.2061 -1.0745 26 6 1.4119 -7.1469 -2.6792 27 6 1.7075 -2.1923 -1.1435 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 0.7591 2.5298 0.8908 32 1 0.7584 2.5303 -0.8891 33 1 3.0062 3.5779 -0.8890 34 1 3.0062 3.5771 0.8910 35 1 4.1156 6.9745 0.0116 36 1 2.5045 -1.8570 2.0856 37 1 0.8035 -1.9761 1.5319 38 1 3.0982 -3.8814 1.0967 39 1 1.3484 -4.2248 1.1918 40 1 4.7616 -6.4705 -2.2321 41 1 3.9929 -7.4530 -3.5016 42 1 3.6251 -5.7158 -3.3754 43 1 2.1814 -8.4302 -0.4002 44 1 3.1493 -9.0379 -1.7645 45 1 3.9188 -8.0552 -0.4952 46 1 1.1862 -6.2417 -3.2429 47 1 1.5536 -7.9789 -3.3690 48 1 0.5852 -7.3709 -2.0053 49 1 0.6325 -2.0815 -1.2864 50 1 2.2391 -1.9667 -2.0680 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496338570.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:29 Heat of formation + Delta-G solvation = -116.554875 kcal Electronic energy + Delta-G solvation = -28363.413727 eV Core-core repulsion = 24390.934889 eV Total energy + Delta-G solvation = -3972.478838 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.10071 -39.94454 -38.41843 -36.77369 -35.04189 -34.22011 -33.50852 -31.50059 -30.61112 -29.04430 -27.74342 -27.68339 -26.85371 -25.82882 -24.20611 -22.20505 -21.80018 -20.49877 -19.65424 -18.73718 -18.17559 -17.38097 -16.78655 -16.69794 -16.08029 -15.55625 -15.36295 -15.21802 -14.87441 -14.56642 -14.38888 -14.09679 -13.70230 -13.40345 -13.37992 -13.25965 -12.86500 -12.82518 -12.47516 -12.35444 -12.25152 -12.21847 -12.18673 -12.18336 -11.94177 -11.73153 -11.64865 -11.54083 -11.14420 -10.95687 -10.91599 -10.65382 -10.61940 -10.27591 -9.96837 -9.65545 -9.22537 -9.06462 -9.04407 -8.53276 -8.32461 -5.96708 -4.01309 1.76140 2.60428 3.09640 3.11868 3.33972 3.38951 3.40464 3.61677 4.28856 4.38032 4.40145 4.42920 4.46582 4.57242 4.69562 4.86933 4.97708 5.07763 5.12799 5.18197 5.20862 5.33169 5.34810 5.35443 5.38157 5.43072 5.45979 5.48838 5.53595 5.57297 5.64146 5.72756 5.75652 5.83256 5.96768 5.97796 6.04012 6.17935 6.19376 6.20336 6.62731 6.85164 7.19735 7.60924 7.72916 7.84364 8.05827 8.09121 8.36523 8.64542 9.06709 9.62203 11.14149 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.033091 B = 0.001996 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.955405 B =14025.348499 C =14133.684824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.620 5.620 3 C 0.515 3.485 4 O -0.529 6.529 5 C -0.127 4.127 6 C 0.036 3.964 7 C -0.528 4.528 8 H 0.055 0.945 9 C 0.058 3.942 10 N -0.889 5.889 11 Si 0.893 3.107 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.277 1.277 15 C 0.130 3.870 16 H 0.118 0.882 17 C -0.145 4.145 18 C 0.109 3.891 19 N -0.603 5.603 20 C 0.669 3.331 21 O -0.565 6.565 22 O -0.361 6.361 23 C 0.135 3.865 24 C -0.184 4.184 25 C -0.140 4.140 26 C -0.183 4.183 27 C 0.117 3.883 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.023 0.977 34 H 0.023 0.977 35 H 0.261 0.739 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.060 0.940 41 H 0.070 0.930 42 H 0.088 0.912 43 H 0.066 0.934 44 H 0.080 0.920 45 H 0.067 0.933 46 H 0.088 0.912 47 H 0.070 0.930 48 H 0.059 0.941 49 H 0.076 0.924 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.385 -29.164 0.320 29.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.355 5.355 3 C 0.305 3.695 4 O -0.404 6.404 5 C -0.166 4.166 6 C -0.001 4.001 7 C -0.566 4.566 8 H 0.074 0.926 9 C -0.144 4.144 10 N -0.528 5.528 11 Si 0.721 3.279 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.202 1.202 15 C 0.024 3.976 16 H 0.136 0.864 17 C -0.184 4.184 18 C -0.014 4.014 19 N -0.345 5.345 20 C 0.424 3.576 21 O -0.454 6.454 22 O -0.276 6.276 23 C 0.098 3.902 24 C -0.241 4.241 25 C -0.197 4.197 26 C -0.240 4.240 27 C -0.006 4.006 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.042 0.958 34 H 0.042 0.958 35 H 0.071 0.929 36 H 0.109 0.891 37 H 0.102 0.898 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.107 0.893 43 H 0.085 0.915 44 H 0.099 0.901 45 H 0.086 0.914 46 H 0.106 0.894 47 H 0.089 0.911 48 H 0.078 0.922 49 H 0.095 0.905 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.556 -29.132 -0.124 29.658 hybrid contribution -0.592 0.769 -0.010 0.971 sum -6.149 -28.363 -0.135 29.022 Atomic orbital electron populations 1.21793 0.79647 1.03306 1.01960 1.47908 1.06781 1.04927 1.75884 1.21684 0.88469 0.85369 0.73961 1.90671 1.14433 1.87082 1.48184 1.21900 1.00721 0.91567 1.02445 1.18914 0.93189 0.89381 0.98632 1.21171 0.92875 0.90983 1.51606 0.92643 1.25028 0.94834 0.99234 0.95291 1.69988 1.06053 1.26717 1.50013 0.86647 0.79537 0.83166 0.78531 1.20262 1.21296 1.20248 1.22030 0.99242 0.83266 0.93043 0.86433 1.23072 1.03542 0.92909 0.98869 1.22027 1.02437 0.97712 0.79256 1.46974 1.72991 1.07242 1.07258 1.17436 0.76462 0.80173 0.83492 1.90916 1.57028 1.84769 1.12735 1.86306 1.83326 1.16689 1.41259 1.22091 0.96214 0.83266 0.88584 1.22524 0.97213 1.04484 0.99911 1.21855 1.02853 0.94295 1.00692 1.22513 0.96371 1.04407 1.00737 1.22526 1.01221 0.78089 0.98747 0.92584 0.91453 0.90019 0.90095 0.90083 0.95822 0.95829 0.92879 0.89074 0.89754 0.90784 0.90913 0.92102 0.91112 0.89338 0.91506 0.90114 0.91425 0.89364 0.91116 0.92223 0.90548 0.89448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.74 8.85 59.85 0.53 1.27 16 2 N -0.62 -8.36 2.91 -171.48 -0.50 -8.86 16 3 C 0.51 9.58 7.67 -10.99 -0.08 9.50 16 4 O -0.53 -12.11 15.36 5.55 0.09 -12.03 16 5 C -0.13 -2.49 4.19 -27.89 -0.12 -2.61 16 6 C 0.04 0.96 4.26 -27.88 -0.12 0.85 16 7 C -0.53 -14.79 9.11 -34.44 -0.31 -15.11 16 8 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 9 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 10 N -0.89 -27.27 13.29 55.43 0.74 -26.53 16 11 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 13 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 14 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 15 C 0.13 1.56 3.45 -65.79 -0.23 1.34 16 16 H 0.12 1.71 7.02 -51.93 -0.36 1.35 16 17 C -0.15 -1.28 6.51 -24.90 -0.16 -1.45 16 18 C 0.11 0.93 6.89 -3.06 -0.02 0.91 16 19 N -0.60 -6.74 3.33 -176.29 -0.59 -7.33 16 20 C 0.67 8.44 7.93 54.05 0.43 8.87 16 21 O -0.57 -8.32 12.14 -19.28 -0.23 -8.56 16 22 O -0.36 -3.96 9.49 -40.31 -0.38 -4.35 16 23 C 0.14 1.20 1.13 -90.62 -0.10 1.10 16 24 C -0.18 -1.66 8.37 37.16 0.31 -1.35 16 25 C -0.14 -0.85 8.85 37.16 0.33 -0.52 16 26 C -0.18 -1.56 8.37 37.15 0.31 -1.25 16 27 C 0.12 1.33 6.46 -2.53 -0.02 1.31 16 28 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 29 H 0.07 0.49 6.41 -51.93 -0.33 0.16 16 30 H 0.08 0.79 6.44 -51.93 -0.33 0.45 16 31 H 0.08 1.43 7.40 -51.93 -0.38 1.05 16 32 H 0.08 1.46 8.11 -51.93 -0.42 1.04 16 33 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 34 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 35 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 36 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.08 0.64 6.40 -51.93 -0.33 0.31 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.09 1.03 5.88 -51.93 -0.31 0.72 16 43 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.09 0.98 5.88 -51.93 -0.31 0.67 16 47 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 48 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.08 0.79 7.00 -51.93 -0.36 0.42 16 50 H 0.09 1.14 8.04 -51.93 -0.42 0.72 16 LS Contribution 395.23 15.07 5.96 5.96 Total: -1.00 -34.99 395.23 -7.89 -42.87 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -8.59 Total: -2.11 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: 0.65 Total: 4.44 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: -0.35 Total: -42.73 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -0.53 Total: -24.93 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.99 -7.89 -42.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496338570.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.681 kcal (2) G-P(sol) polarization free energy of solvation -34.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds