Wall clock time and date at job start Tue Mar 31 2020 14:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34770 * 119.99711 * 2 1 4 4 O 1.21283 * 120.00059 * 180.02562 * 3 2 1 5 5 C 1.50697 * 120.00483 * 0.02562 * 3 2 1 6 6 C 1.52996 * 109.47491 * 179.97438 * 5 3 2 7 7 C 1.50702 * 109.47159 * 179.97438 * 6 5 3 8 8 H 1.08002 * 120.00299 * 0.02562 * 7 6 5 9 9 C 1.37884 * 119.99942 * 179.72211 * 7 6 5 10 10 N 1.31514 * 119.99698 * 0.28408 * 9 7 6 11 11 Si 1.86794 * 119.99837 * 180.27476 * 9 7 6 12 12 H 1.48504 * 109.47196 * 60.00645 * 11 9 7 13 13 H 1.48504 * 109.46887 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47679 * 300.00280 * 11 9 7 15 15 C 1.46493 * 119.99897 * 180.02562 * 2 1 3 16 16 H 1.09004 * 110.88574 * 176.11809 * 15 2 1 17 17 C 1.55160 * 111.00492 * 299.99347 * 15 2 1 18 18 C 1.54321 * 102.94166 * 153.57739 * 17 15 2 19 19 N 1.47025 * 107.27581 * 337.81242 * 18 17 15 20 20 C 1.34773 * 125.65054 * 178.96476 * 19 18 17 21 21 O 1.21509 * 119.99996 * 179.97438 * 20 19 18 22 22 O 1.34637 * 119.99936 * 359.96758 * 20 19 18 23 23 C 1.45201 * 116.99546 * 180.02562 * 22 20 19 24 24 C 1.52998 * 109.47488 * 60.00260 * 23 22 20 25 25 C 1.53007 * 109.46776 * 179.97438 * 23 22 20 26 26 C 1.52995 * 109.47160 * 299.99791 * 23 22 20 27 27 C 1.47430 * 108.69751 * 358.93826 * 19 18 17 28 28 H 1.08997 * 109.47508 * 89.99709 * 1 2 3 29 29 H 1.09002 * 109.46900 * 209.99892 * 1 2 3 30 30 H 1.09003 * 109.47017 * 329.99484 * 1 2 3 31 31 H 1.09004 * 109.46801 * 59.99704 * 5 3 2 32 32 H 1.09000 * 109.47461 * 300.00236 * 5 3 2 33 33 H 1.09004 * 109.47066 * 60.00201 * 6 5 3 34 34 H 1.08994 * 109.47405 * 300.00031 * 6 5 3 35 35 H 0.97005 * 119.99651 * 179.97438 * 10 9 7 36 36 H 1.08999 * 110.72133 * 271.94169 * 17 15 2 37 37 H 1.09003 * 110.71514 * 35.04070 * 17 15 2 38 38 H 1.09007 * 109.88384 * 97.22699 * 18 17 15 39 39 H 1.09001 * 109.88533 * 218.38836 * 18 17 15 40 40 H 1.09007 * 109.47171 * 59.99516 * 24 23 22 41 41 H 1.09000 * 109.47067 * 179.97438 * 24 23 22 42 42 H 1.09003 * 109.47132 * 300.00031 * 24 23 22 43 43 H 1.09000 * 109.46930 * 59.99738 * 25 23 22 44 44 H 1.09000 * 109.47317 * 179.97438 * 25 23 22 45 45 H 1.08998 * 109.47149 * 300.00305 * 25 23 22 46 46 H 1.08995 * 109.46914 * 60.00634 * 26 23 22 47 47 H 1.09006 * 109.47216 * 180.02562 * 26 23 22 48 48 H 1.08996 * 109.47583 * 300.00038 * 26 23 22 49 49 H 1.09004 * 110.36532 * 265.28834 * 27 19 18 50 50 H 1.09003 * 110.36386 * 142.97305 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 0.0006 6 6 2.3796 3.6352 0.0011 7 6 1.6260 4.9403 0.0011 8 1 0.5460 4.9403 0.0011 9 6 2.3154 6.1344 0.0073 10 7 3.6306 6.1344 0.0076 11 14 1.3814 7.7520 0.0150 12 1 0.5272 7.8247 1.2276 13 1 2.3464 8.8808 0.0203 14 1 0.5280 7.8368 -1.1974 15 6 2.1975 -1.2687 -0.0006 16 1 3.2718 -1.0972 -0.0694 17 6 1.8485 -2.1129 1.2536 18 6 2.1064 -3.5588 0.7797 19 7 2.0265 -3.5578 -0.6884 20 6 2.2134 -4.6281 -1.4859 21 8 2.1222 -4.5104 -2.6919 22 8 2.5014 -5.8275 -0.9464 23 6 2.6903 -6.9355 -1.8657 24 6 3.8508 -6.6211 -2.8118 25 6 3.0079 -8.2061 -1.0745 26 6 1.4119 -7.1469 -2.6792 27 6 1.7075 -2.1923 -1.1435 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 0.7591 2.5298 0.8908 32 1 0.7584 2.5303 -0.8891 33 1 3.0062 3.5779 -0.8890 34 1 3.0062 3.5771 0.8910 35 1 4.1156 6.9745 0.0116 36 1 2.5045 -1.8570 2.0856 37 1 0.8035 -1.9761 1.5319 38 1 3.0982 -3.8814 1.0967 39 1 1.3484 -4.2248 1.1918 40 1 4.7616 -6.4705 -2.2321 41 1 3.9929 -7.4530 -3.5016 42 1 3.6251 -5.7158 -3.3754 43 1 2.1814 -8.4302 -0.4002 44 1 3.1493 -9.0379 -1.7645 45 1 3.9188 -8.0552 -0.4952 46 1 1.1862 -6.2417 -3.2429 47 1 1.5536 -7.9789 -3.3690 48 1 0.5852 -7.3709 -2.0053 49 1 0.6325 -2.0815 -1.2864 50 1 2.2391 -1.9667 -2.0680 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496338570.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:28 Heat of formation + Delta-G solvation = -139.434204 kcal Electronic energy + Delta-G solvation = -28364.405850 eV Core-core repulsion = 24390.934889 eV Total energy + Delta-G solvation = -3973.470960 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.99954 -41.13170 -39.50519 -37.73771 -36.19187 -35.58206 -34.99094 -33.13418 -31.82575 -30.01188 -28.37573 -28.28991 -27.91749 -27.59493 -25.28341 -23.76402 -22.66515 -21.75255 -20.48219 -19.99755 -19.06091 -18.91866 -18.11173 -17.58353 -17.39851 -16.82460 -16.68320 -16.47396 -16.09143 -15.76197 -15.31932 -14.90183 -14.73239 -14.58519 -14.51979 -14.17431 -14.14899 -13.85325 -13.71959 -13.35311 -13.34133 -13.09831 -13.01887 -12.94696 -12.87547 -12.78603 -12.76198 -12.61241 -12.47951 -12.44974 -12.29195 -11.88801 -11.77775 -11.57472 -11.41504 -11.30595 -11.16698 -10.71698 -10.54603 -9.97561 -9.62942 -8.16593 -6.30622 0.89864 1.43207 1.47685 1.55299 1.63821 1.66956 2.00028 2.44314 2.82852 3.16397 3.39960 3.50097 3.74232 3.78750 3.80056 3.94113 3.99228 4.06768 4.15292 4.33712 4.43923 4.48820 4.52399 4.53908 4.60975 4.67787 4.69172 4.73184 4.75949 4.78236 4.83862 4.87911 4.88147 4.96866 5.03522 5.09949 5.13767 5.16299 5.27210 5.33044 5.42289 5.49677 5.59633 5.64341 5.86544 6.18551 6.29647 6.34392 6.87875 7.16973 7.23172 7.39633 8.95828 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.033091 B = 0.001996 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.955405 B =14025.348499 C =14133.684824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.604 5.604 3 C 0.513 3.487 4 O -0.588 6.588 5 C -0.114 4.114 6 C 0.041 3.959 7 C -0.542 4.542 8 H 0.078 0.922 9 C -0.008 4.008 10 N -0.938 5.938 11 Si 0.974 3.026 12 H -0.261 1.261 13 H -0.290 1.290 14 H -0.263 1.263 15 C 0.125 3.875 16 H 0.083 0.917 17 C -0.130 4.130 18 C 0.110 3.890 19 N -0.605 5.605 20 C 0.664 3.336 21 O -0.593 6.593 22 O -0.361 6.361 23 C 0.123 3.877 24 C -0.181 4.181 25 C -0.134 4.134 26 C -0.178 4.178 27 C 0.125 3.875 28 H 0.069 0.931 29 H 0.101 0.899 30 H 0.088 0.912 31 H 0.109 0.891 32 H 0.103 0.897 33 H -0.021 1.021 34 H -0.018 1.018 35 H 0.262 0.738 36 H 0.093 0.907 37 H 0.109 0.891 38 H 0.076 0.924 39 H 0.097 0.903 40 H 0.059 0.941 41 H 0.092 0.908 42 H 0.057 0.943 43 H 0.073 0.927 44 H 0.102 0.898 45 H 0.068 0.932 46 H 0.058 0.942 47 H 0.091 0.909 48 H 0.065 0.935 49 H 0.096 0.904 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.628 -30.818 1.345 32.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.337 5.337 3 C 0.303 3.697 4 O -0.467 6.467 5 C -0.153 4.153 6 C 0.004 3.996 7 C -0.580 4.580 8 H 0.096 0.904 9 C -0.206 4.206 10 N -0.578 5.578 11 Si 0.798 3.202 12 H -0.185 1.185 13 H -0.215 1.215 14 H -0.188 1.188 15 C 0.020 3.980 16 H 0.102 0.898 17 C -0.169 4.169 18 C -0.012 4.012 19 N -0.346 5.346 20 C 0.419 3.581 21 O -0.485 6.485 22 O -0.276 6.276 23 C 0.087 3.913 24 C -0.239 4.239 25 C -0.191 4.191 26 C -0.235 4.235 27 C 0.002 3.998 28 H 0.088 0.912 29 H 0.120 0.880 30 H 0.107 0.893 31 H 0.127 0.873 32 H 0.121 0.879 33 H -0.003 1.003 34 H 0.001 0.999 35 H 0.071 0.929 36 H 0.112 0.888 37 H 0.127 0.873 38 H 0.094 0.906 39 H 0.115 0.885 40 H 0.078 0.922 41 H 0.111 0.889 42 H 0.076 0.924 43 H 0.092 0.908 44 H 0.121 0.879 45 H 0.087 0.913 46 H 0.077 0.923 47 H 0.110 0.890 48 H 0.084 0.916 49 H 0.114 0.886 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.866 -30.846 0.921 32.108 hybrid contribution 0.441 1.179 -0.365 1.310 sum -8.425 -29.668 0.556 30.846 Atomic orbital electron populations 1.22179 0.76553 1.05418 1.03563 1.47772 1.08522 1.03828 1.73584 1.21456 0.87639 0.86640 0.73938 1.90655 1.16795 1.87968 1.51308 1.21646 0.99207 0.89667 1.04787 1.18703 0.93755 0.92595 0.94581 1.21691 0.94050 0.91513 1.50736 0.90400 1.26156 0.95721 1.04000 0.94708 1.70180 1.08340 1.27816 1.51478 0.85370 0.78025 0.77318 0.79500 1.18520 1.21535 1.18760 1.22018 0.97437 0.83012 0.95568 0.89830 1.23035 1.05028 0.91883 0.96939 1.22177 1.03512 0.97913 0.77571 1.47041 1.72556 1.06689 1.08362 1.17622 0.76336 0.80834 0.83284 1.90908 1.58195 1.85306 1.14050 1.86318 1.82994 1.16463 1.41777 1.22467 0.96197 0.83628 0.89006 1.22488 0.97332 1.03912 1.00128 1.21874 1.03090 0.93131 1.00965 1.22458 0.96440 1.03748 1.00890 1.22377 1.01862 0.78317 0.97261 0.91226 0.88041 0.89321 0.87308 0.87877 1.00286 0.99914 0.92926 0.88848 0.87272 0.90573 0.88499 0.92215 0.88906 0.92427 0.90845 0.87918 0.91337 0.92261 0.89042 0.91580 0.88560 0.92011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.02 8.85 127.77 1.13 2.15 16 2 N -0.60 -15.66 2.91 -814.84 -2.37 -18.03 16 3 C 0.51 19.49 7.67 87.66 0.67 20.17 16 4 O -0.59 -28.75 15.36 -3.04 -0.05 -28.79 16 5 C -0.11 -4.44 4.19 29.85 0.13 -4.31 16 6 C 0.04 2.29 4.26 29.85 0.13 2.42 16 7 C -0.54 -30.57 9.11 25.60 0.23 -30.34 16 8 H 0.08 3.95 7.74 -2.91 -0.02 3.92 16 9 C -0.01 -0.49 5.46 84.66 0.46 -0.03 16 10 N -0.94 -59.69 13.29 21.45 0.28 -59.40 16 11 Si 0.97 44.08 29.54 68.60 2.03 46.11 16 12 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 13 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 14 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 15 C 0.12 2.97 3.45 46.38 0.16 3.13 16 16 H 0.08 2.60 7.02 -2.39 -0.02 2.59 16 17 C -0.13 -2.00 6.51 31.78 0.21 -1.79 16 18 C 0.11 1.66 6.89 86.73 0.60 2.25 16 19 N -0.61 -13.02 3.33 -942.08 -3.13 -16.16 16 20 C 0.66 16.65 7.93 129.79 1.03 17.68 16 21 O -0.59 -18.04 12.14 19.81 0.24 -17.80 16 22 O -0.36 -7.59 9.49 -55.46 -0.53 -8.12 16 23 C 0.12 2.03 1.13 -10.79 -0.01 2.02 16 24 C -0.18 -3.21 8.37 71.98 0.60 -2.60 16 25 C -0.13 -1.29 8.85 71.98 0.64 -0.65 16 26 C -0.18 -2.83 8.37 71.98 0.60 -2.23 16 27 C 0.12 2.78 6.46 86.85 0.56 3.34 16 28 H 0.07 0.99 8.09 -2.39 -0.02 0.97 16 29 H 0.10 0.98 6.41 -2.39 -0.02 0.96 16 30 H 0.09 1.35 6.44 -2.39 -0.02 1.34 16 31 H 0.11 3.63 7.40 -2.38 -0.02 3.61 16 32 H 0.10 3.56 8.11 -2.39 -0.02 3.54 16 33 H -0.02 -1.35 8.10 -2.38 -0.02 -1.37 16 34 H -0.02 -1.10 8.10 -2.39 -0.02 -1.12 16 35 H 0.26 15.67 8.31 -92.70 -0.77 14.90 16 36 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.11 1.18 6.40 -2.39 -0.02 1.16 16 38 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 39 H 0.10 1.06 8.14 -2.39 -0.02 1.05 16 40 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 41 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.06 1.40 5.88 -2.39 -0.01 1.39 16 43 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 45 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 46 H 0.06 1.32 5.88 -2.39 -0.01 1.31 16 47 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 48 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 49 H 0.10 1.77 7.00 -2.38 -0.02 1.76 16 50 H 0.06 1.70 8.04 -2.39 -0.02 1.68 16 Total: -1.00 -82.66 395.23 4.52 -78.13 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: 0.91 Total: 12.86 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: 7.14 Total: 11.19 kcal Atomic # 7 Polarization: -88.37 SS G_CDS: -5.22 Total: -93.59 kcal Atomic # 8 Polarization: -54.38 SS G_CDS: -0.33 Total: -54.71 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -82.66 4.52 -78.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496338570.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.300 kcal (2) G-P(sol) polarization free energy of solvation -82.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds