Wall clock time and date at job start Tue Mar 31 2020 15:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.47161 * 2 1 4 4 H 1.08994 * 109.47103 * 55.58650 * 3 2 1 5 5 N 1.46510 * 109.46832 * 295.58663 * 3 2 1 6 6 C 1.34776 * 119.99613 * 84.72819 * 5 3 2 7 7 O 1.21505 * 120.00114 * 0.26866 * 6 5 3 8 8 O 1.34636 * 119.99289 * 180.27482 * 6 5 3 9 9 C 1.45210 * 116.99500 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.46568 * 60.00389 * 9 8 6 11 11 C 1.52995 * 109.46831 * 179.97438 * 9 8 6 12 12 C 1.52998 * 109.47384 * 300.00233 * 9 8 6 13 13 C 1.50695 * 109.47266 * 175.58920 * 3 2 1 14 14 O 1.21283 * 120.00150 * 96.03131 * 13 3 2 15 15 N 1.34772 * 120.00020 * 276.04281 * 13 3 2 16 16 C 1.46500 * 120.00329 * 184.92477 * 15 13 3 17 17 C 1.52997 * 109.47300 * 175.52590 * 16 15 13 18 18 C 1.50696 * 115.55326 * 299.77577 * 17 16 15 19 19 H 1.07996 * 120.00160 * 95.14841 * 18 17 16 20 20 C 1.37884 * 120.00125 * 275.15780 * 18 17 16 21 21 N 1.31510 * 119.99800 * 6.67695 * 20 18 17 22 22 Si 1.86797 * 119.99770 * 186.67681 * 20 18 17 23 23 H 1.48500 * 109.47327 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47174 * 119.99943 * 22 20 18 25 25 H 1.48502 * 109.46916 * 239.99769 * 22 20 18 26 26 C 1.53008 * 117.49832 * 154.10853 * 17 16 15 27 27 C 1.53003 * 117.49776 * 85.44980 * 17 16 15 28 28 H 1.08998 * 109.47204 * 300.00426 * 1 2 3 29 29 H 1.09005 * 109.46740 * 60.00185 * 1 2 3 30 30 H 1.08999 * 109.47212 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47204 * 239.99574 * 2 1 3 32 32 H 1.09005 * 109.46740 * 119.99815 * 2 1 3 33 33 H 0.96996 * 119.99444 * 265.00191 * 5 3 2 34 34 H 1.08998 * 109.47772 * 59.99701 * 10 9 8 35 35 H 1.09003 * 109.46718 * 179.97438 * 10 9 8 36 36 H 1.08997 * 109.47300 * 299.99333 * 10 9 8 37 37 H 1.09000 * 109.47538 * 60.00383 * 11 9 8 38 38 H 1.08997 * 109.47357 * 180.02562 * 11 9 8 39 39 H 1.09001 * 109.47280 * 300.00471 * 11 9 8 40 40 H 1.08997 * 109.47320 * 60.00155 * 12 9 8 41 41 H 1.08997 * 109.46695 * 180.02562 * 12 9 8 42 42 H 1.08999 * 109.46831 * 300.00107 * 12 9 8 43 43 H 0.97004 * 120.00238 * 4.91665 * 15 13 3 44 44 H 1.08998 * 109.47159 * 295.52990 * 16 15 13 45 45 H 1.09006 * 109.46835 * 55.52647 * 16 15 13 46 46 H 0.97001 * 119.99888 * 185.00768 * 21 20 18 47 47 H 1.08999 * 117.49809 * 0.02562 * 26 17 16 48 48 H 1.08997 * 117.50110 * 145.02150 * 26 17 16 49 49 H 1.09003 * 117.49423 * 214.97606 * 27 17 16 50 50 H 1.08997 * 117.49650 * 359.97423 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6136 1.9786 0.8478 5 7 1.6404 2.1017 -1.2459 6 6 0.4200 2.6642 -1.3491 7 8 -0.3469 2.6288 -0.4073 8 8 0.0507 3.2651 -2.4959 9 6 -1.2783 3.8489 -2.5359 10 6 -1.3962 4.9228 -1.4525 11 6 -1.5162 4.4816 -3.9084 12 6 -2.3222 2.7581 -2.2886 13 6 3.5431 1.4439 0.1093 14 8 4.2238 1.5280 -0.8910 15 7 4.1309 1.3515 1.3185 16 6 5.5871 1.4612 1.4355 17 6 5.9835 1.4347 2.9130 18 6 5.4097 2.5412 3.7599 19 1 4.5013 2.3766 4.3203 20 6 6.0443 3.7639 3.8193 21 7 7.0735 4.0090 3.0383 22 14 5.4420 5.0719 5.0091 23 1 4.2774 4.5513 5.7692 24 1 6.5333 5.4225 5.9533 25 1 5.0363 6.2822 4.2502 26 6 7.3883 0.9366 3.2587 27 6 6.1687 0.0655 3.5702 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 2.2527 2.1298 -1.9976 34 1 -0.6525 5.6999 -1.6285 35 1 -2.3936 5.3614 -1.4827 36 1 -1.2265 4.4724 -0.4745 37 1 -1.4320 3.7169 -4.6806 38 1 -2.5136 4.9203 -3.9383 39 1 -0.7724 5.2588 -4.0841 40 1 -2.1525 2.3077 -1.3106 41 1 -3.3197 3.1963 -2.3191 42 1 -2.2381 1.9931 -3.0604 43 1 3.5898 1.2124 2.1115 44 1 6.0572 0.6250 0.9181 45 1 5.9180 2.3982 0.9873 46 1 7.5650 4.8403 3.1303 47 1 8.0302 0.6282 2.4335 48 1 7.8972 1.4089 4.0989 49 1 5.8758 -0.0347 4.6154 50 1 6.0077 -0.8163 2.9501 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496494398.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:58:27 Heat of formation + Delta-G solvation = -107.611489 kcal Electronic energy + Delta-G solvation = -29149.954950 eV Core-core repulsion = 25177.863926 eV Total energy + Delta-G solvation = -3972.091024 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.96697 -39.51955 -37.57248 -36.71330 -35.06747 -34.26328 -33.47635 -32.05831 -31.99296 -28.09464 -27.58542 -27.50977 -25.95549 -24.99924 -22.83392 -21.60412 -21.18119 -20.21162 -19.82880 -19.37418 -18.35896 -17.03297 -16.55599 -16.39779 -15.97701 -15.67241 -14.98404 -14.76960 -14.70189 -14.42649 -14.38076 -13.93881 -13.75046 -13.48681 -13.20825 -12.79714 -12.67569 -12.59647 -12.31581 -12.08999 -12.03941 -11.98595 -11.76410 -11.63950 -11.58852 -11.48999 -11.38650 -11.10779 -10.91923 -10.88569 -10.55394 -10.42922 -10.32136 -10.03583 -9.75681 -9.52723 -9.08479 -9.00669 -8.52775 -8.40125 -8.15237 -6.13616 -4.21962 2.05481 2.82017 3.02117 3.23188 3.32976 3.34922 3.66514 4.14641 4.33227 4.55586 4.59934 4.74206 4.92061 4.94165 5.08061 5.15879 5.27864 5.28423 5.35528 5.36996 5.45931 5.50812 5.56593 5.63172 5.70743 5.79296 5.80866 5.92969 5.96605 6.04537 6.10659 6.17346 6.26311 6.31083 6.39438 6.41398 6.46224 6.53374 6.64170 6.79249 7.03285 7.14073 7.35241 7.41203 7.47156 7.77099 8.11519 8.27660 8.40602 8.66543 8.80111 9.46253 10.94913 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.013913 B = 0.003174 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.089328 B = 8818.271788 C = 9822.726094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.129 4.129 3 C 0.146 3.854 4 H 0.113 0.887 5 N -0.691 5.691 6 C 0.655 3.345 7 O -0.565 6.565 8 O -0.364 6.364 9 C 0.137 3.863 10 C -0.185 4.185 11 C -0.141 4.141 12 C -0.183 4.183 13 C 0.504 3.496 14 O -0.552 6.552 15 N -0.691 5.691 16 C 0.163 3.837 17 C 0.026 3.974 18 C -0.500 4.500 19 H 0.061 0.939 20 C 0.075 3.925 21 N -0.872 5.872 22 Si 0.887 3.113 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.284 1.284 26 C -0.148 4.148 27 C -0.210 4.210 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.048 0.952 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.414 0.586 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.090 0.910 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.090 0.910 41 H 0.068 0.932 42 H 0.058 0.942 43 H 0.403 0.597 44 H 0.037 0.963 45 H 0.076 0.924 46 H 0.261 0.739 47 H 0.065 0.935 48 H 0.083 0.917 49 H 0.079 0.921 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.838 -3.798 -9.791 19.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.168 4.168 3 C 0.038 3.962 4 H 0.131 0.869 5 N -0.352 5.352 6 C 0.408 3.592 7 O -0.454 6.454 8 O -0.279 6.279 9 C 0.100 3.900 10 C -0.242 4.242 11 C -0.198 4.198 12 C -0.240 4.240 13 C 0.287 3.713 14 O -0.431 6.431 15 N -0.339 5.339 16 C 0.040 3.960 17 C 0.026 3.974 18 C -0.538 4.538 19 H 0.079 0.921 20 C -0.130 4.130 21 N -0.508 5.508 22 Si 0.715 3.285 23 H -0.196 1.196 24 H -0.209 1.209 25 H -0.211 1.211 26 C -0.187 4.187 27 C -0.247 4.247 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.252 0.748 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.109 0.891 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.109 0.891 41 H 0.087 0.913 42 H 0.077 0.923 43 H 0.237 0.763 44 H 0.056 0.944 45 H 0.094 0.906 46 H 0.071 0.929 47 H 0.084 0.916 48 H 0.102 0.898 49 H 0.097 0.903 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.652 -3.509 -10.155 18.985 hybrid contribution -0.083 0.836 0.731 1.114 sum -15.735 -2.673 -9.424 18.535 Atomic orbital electron populations 1.21805 0.94163 1.00751 1.03173 1.21906 0.97494 0.94070 1.03369 1.20864 0.92717 0.95054 0.87537 0.86894 1.44394 1.14602 1.58648 1.17555 1.17886 0.82684 0.77110 0.81526 1.90899 1.52131 1.63399 1.38994 1.86316 1.36432 1.68516 1.36650 1.22044 0.78229 0.92881 0.96860 1.22529 1.02424 0.98328 1.00904 1.21859 1.02471 1.01158 0.94330 1.22523 0.98221 0.98662 1.04622 1.20287 0.89113 0.77485 0.84390 1.90664 1.65181 1.51029 1.36223 1.45878 1.09927 1.70420 1.07719 1.21054 0.77089 1.00347 0.97539 1.19037 0.96459 0.91406 0.90527 1.20386 1.10638 0.95004 1.27735 0.92061 1.24965 0.95268 0.97814 0.94929 1.70013 1.19709 1.25206 1.35895 0.86620 0.78929 0.81842 0.81140 1.19620 1.20908 1.21054 1.22492 0.91262 1.02958 1.01948 1.23047 1.06179 0.94869 1.00620 0.91657 0.92628 0.93293 0.91097 0.90072 0.74817 0.92128 0.91302 0.89127 0.91531 0.90246 0.91432 0.89120 0.91305 0.92299 0.76267 0.94426 0.90589 0.92901 0.91641 0.89811 0.90263 0.91575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 8.50 37.16 0.32 -1.32 16 2 C -0.13 -1.55 5.60 -26.73 -0.15 -1.70 16 3 C 0.15 2.09 2.66 -69.08 -0.18 1.90 16 4 H 0.11 1.64 7.58 -51.93 -0.39 1.25 16 5 N -0.69 -9.81 5.01 -59.87 -0.30 -10.11 16 6 C 0.65 9.28 6.59 54.05 0.36 9.64 16 7 O -0.56 -8.42 9.00 -19.28 -0.17 -8.60 16 8 O -0.36 -4.76 9.94 -40.31 -0.40 -5.16 16 9 C 0.14 1.44 1.13 -90.62 -0.10 1.34 16 10 C -0.18 -1.98 8.37 37.16 0.31 -1.66 16 11 C -0.14 -1.12 8.85 37.15 0.33 -0.79 16 12 C -0.18 -1.78 8.37 37.16 0.31 -1.46 16 13 C 0.50 8.87 7.04 -10.99 -0.08 8.79 16 14 O -0.55 -11.34 15.99 5.55 0.09 -11.25 16 15 N -0.69 -12.72 5.40 -60.30 -0.33 -13.04 16 16 C 0.16 3.53 5.52 -4.04 -0.02 3.50 16 17 C 0.03 0.60 1.41 -155.66 -0.22 0.38 16 18 C -0.50 -12.51 8.48 -34.44 -0.29 -12.80 16 19 H 0.06 1.51 7.82 -52.49 -0.41 1.10 16 20 C 0.07 1.94 5.39 -17.82 -0.10 1.85 16 21 N -0.87 -23.81 12.95 55.43 0.72 -23.10 16 22 Si 0.89 20.37 29.55 -169.99 -5.02 15.35 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 C -0.15 -3.27 9.48 -26.69 -0.25 -3.52 16 27 C -0.21 -4.17 9.95 -26.69 -0.27 -4.43 16 28 H 0.06 0.80 7.81 -51.93 -0.41 0.39 16 29 H 0.05 0.70 5.64 -51.93 -0.29 0.41 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.41 5.91 7.88 -40.82 -0.32 5.59 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.09 1.18 5.88 -51.93 -0.31 0.87 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.09 1.06 5.88 -51.93 -0.31 0.76 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.40 6.77 8.31 -40.82 -0.34 6.43 16 44 H 0.04 0.79 8.11 -51.93 -0.42 0.37 16 45 H 0.08 1.92 8.14 -51.93 -0.42 1.50 16 46 H 0.26 6.87 8.32 -40.82 -0.34 6.53 16 47 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 48 H 0.08 1.97 8.14 -51.93 -0.42 1.55 16 49 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 50 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 401.85 15.07 6.06 6.06 Total: -1.00 -28.73 401.85 -8.07 -36.81 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: -8.67 Total: 13.35 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -0.04 Total: -0.30 kcal Atomic # 7 Polarization: -46.35 SS G_CDS: 0.09 Total: -46.25 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: -0.49 Total: -25.01 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -28.73 -8.07 -36.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496494398.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.806 kcal (2) G-P(sol) polarization free energy of solvation -28.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds