Wall clock time and date at job start Tue Mar 31 2020 15:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.47161 * 2 1 4 4 H 1.08994 * 109.47103 * 55.58650 * 3 2 1 5 5 N 1.46510 * 109.46832 * 295.58663 * 3 2 1 6 6 C 1.34776 * 119.99613 * 84.72819 * 5 3 2 7 7 O 1.21505 * 120.00114 * 0.26866 * 6 5 3 8 8 O 1.34636 * 119.99289 * 180.27482 * 6 5 3 9 9 C 1.45210 * 116.99500 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.46568 * 60.00389 * 9 8 6 11 11 C 1.52995 * 109.46831 * 179.97438 * 9 8 6 12 12 C 1.52998 * 109.47384 * 300.00233 * 9 8 6 13 13 C 1.50695 * 109.47266 * 175.58920 * 3 2 1 14 14 O 1.21283 * 120.00150 * 96.03131 * 13 3 2 15 15 N 1.34772 * 120.00020 * 276.04281 * 13 3 2 16 16 C 1.46500 * 120.00329 * 184.92477 * 15 13 3 17 17 C 1.52997 * 109.47300 * 175.52590 * 16 15 13 18 18 C 1.50696 * 115.55326 * 299.77577 * 17 16 15 19 19 H 1.07996 * 120.00160 * 95.14841 * 18 17 16 20 20 C 1.37884 * 120.00125 * 275.15780 * 18 17 16 21 21 N 1.31510 * 119.99800 * 6.67695 * 20 18 17 22 22 Si 1.86797 * 119.99770 * 186.67681 * 20 18 17 23 23 H 1.48500 * 109.47327 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47174 * 119.99943 * 22 20 18 25 25 H 1.48502 * 109.46916 * 239.99769 * 22 20 18 26 26 C 1.53008 * 117.49832 * 154.10853 * 17 16 15 27 27 C 1.53003 * 117.49776 * 85.44980 * 17 16 15 28 28 H 1.08998 * 109.47204 * 300.00426 * 1 2 3 29 29 H 1.09005 * 109.46740 * 60.00185 * 1 2 3 30 30 H 1.08999 * 109.47212 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47204 * 239.99574 * 2 1 3 32 32 H 1.09005 * 109.46740 * 119.99815 * 2 1 3 33 33 H 0.96996 * 119.99444 * 265.00191 * 5 3 2 34 34 H 1.08998 * 109.47772 * 59.99701 * 10 9 8 35 35 H 1.09003 * 109.46718 * 179.97438 * 10 9 8 36 36 H 1.08997 * 109.47300 * 299.99333 * 10 9 8 37 37 H 1.09000 * 109.47538 * 60.00383 * 11 9 8 38 38 H 1.08997 * 109.47357 * 180.02562 * 11 9 8 39 39 H 1.09001 * 109.47280 * 300.00471 * 11 9 8 40 40 H 1.08997 * 109.47320 * 60.00155 * 12 9 8 41 41 H 1.08997 * 109.46695 * 180.02562 * 12 9 8 42 42 H 1.08999 * 109.46831 * 300.00107 * 12 9 8 43 43 H 0.97004 * 120.00238 * 4.91665 * 15 13 3 44 44 H 1.08998 * 109.47159 * 295.52990 * 16 15 13 45 45 H 1.09006 * 109.46835 * 55.52647 * 16 15 13 46 46 H 0.97001 * 119.99888 * 185.00768 * 21 20 18 47 47 H 1.08999 * 117.49809 * 0.02562 * 26 17 16 48 48 H 1.08997 * 117.50110 * 145.02150 * 26 17 16 49 49 H 1.09003 * 117.49423 * 214.97606 * 27 17 16 50 50 H 1.08997 * 117.49650 * 359.97423 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6136 1.9786 0.8478 5 7 1.6404 2.1017 -1.2459 6 6 0.4200 2.6642 -1.3491 7 8 -0.3469 2.6288 -0.4073 8 8 0.0507 3.2651 -2.4959 9 6 -1.2783 3.8489 -2.5359 10 6 -1.3962 4.9228 -1.4525 11 6 -1.5162 4.4816 -3.9084 12 6 -2.3222 2.7581 -2.2886 13 6 3.5431 1.4439 0.1093 14 8 4.2238 1.5280 -0.8910 15 7 4.1309 1.3515 1.3185 16 6 5.5871 1.4612 1.4355 17 6 5.9835 1.4347 2.9130 18 6 5.4097 2.5412 3.7599 19 1 4.5013 2.3766 4.3203 20 6 6.0443 3.7639 3.8193 21 7 7.0735 4.0090 3.0383 22 14 5.4420 5.0719 5.0091 23 1 4.2774 4.5513 5.7692 24 1 6.5333 5.4225 5.9533 25 1 5.0363 6.2822 4.2502 26 6 7.3883 0.9366 3.2587 27 6 6.1687 0.0655 3.5702 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 2.2527 2.1298 -1.9976 34 1 -0.6525 5.6999 -1.6285 35 1 -2.3936 5.3614 -1.4827 36 1 -1.2265 4.4724 -0.4745 37 1 -1.4320 3.7169 -4.6806 38 1 -2.5136 4.9203 -3.9383 39 1 -0.7724 5.2588 -4.0841 40 1 -2.1525 2.3077 -1.3106 41 1 -3.3197 3.1963 -2.3191 42 1 -2.2381 1.9931 -3.0604 43 1 3.5898 1.2124 2.1115 44 1 6.0572 0.6250 0.9181 45 1 5.9180 2.3982 0.9873 46 1 7.5650 4.8403 3.1303 47 1 8.0302 0.6282 2.4335 48 1 7.8972 1.4089 4.0989 49 1 5.8758 -0.0347 4.6154 50 1 6.0077 -0.8163 2.9501 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496494398.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:58:26 Heat of formation + Delta-G solvation = -125.649828 kcal Electronic energy + Delta-G solvation = -29150.737151 eV Core-core repulsion = 25177.863926 eV Total energy + Delta-G solvation = -3972.873225 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.04680 -40.88507 -38.82719 -38.25112 -36.22455 -35.23891 -34.97108 -33.97628 -33.05893 -29.42092 -28.32144 -28.26870 -27.72147 -26.65912 -23.81442 -23.01423 -22.60498 -21.42202 -21.24465 -20.89190 -19.50075 -18.45381 -17.81075 -17.52695 -17.41585 -16.94384 -16.63246 -16.19213 -16.03327 -15.67155 -15.52001 -15.27496 -14.84051 -14.69351 -14.41147 -14.36664 -13.85383 -13.56480 -13.39407 -13.32752 -13.10298 -13.01580 -12.95880 -12.88337 -12.86817 -12.79561 -12.51681 -12.44210 -12.34913 -12.24707 -12.01523 -11.83963 -11.50674 -11.33259 -11.07072 -10.99588 -10.81432 -10.46550 -10.29275 -10.03359 -9.84962 -8.11915 -6.23575 0.99007 1.39519 1.44624 1.52685 1.56874 1.76941 2.26892 2.42765 3.12386 3.18287 3.45717 3.70951 3.78449 3.82830 3.87820 3.97994 3.98699 4.26329 4.33882 4.49853 4.56021 4.59019 4.65692 4.67674 4.71901 4.75537 4.79899 4.84248 4.87761 4.91076 4.97331 5.01529 5.03804 5.08598 5.13323 5.23932 5.29425 5.32677 5.39158 5.43463 5.51822 5.58909 5.61069 5.67495 5.78401 6.34408 6.36568 6.63775 6.84955 7.21614 7.31390 7.46781 8.96372 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.013913 B = 0.003174 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.089328 B = 8818.271788 C = 9822.726094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.123 4.123 3 C 0.156 3.844 4 H 0.112 0.888 5 N -0.695 5.695 6 C 0.654 3.346 7 O -0.573 6.573 8 O -0.372 6.372 9 C 0.124 3.876 10 C -0.182 4.182 11 C -0.137 4.137 12 C -0.178 4.178 13 C 0.506 3.494 14 O -0.582 6.582 15 N -0.688 5.688 16 C 0.179 3.821 17 C 0.003 3.997 18 C -0.501 4.501 19 H 0.064 0.936 20 C 0.027 3.973 21 N -0.905 5.905 22 Si 0.942 3.058 23 H -0.261 1.261 24 H -0.283 1.283 25 H -0.292 1.292 26 C -0.161 4.161 27 C -0.174 4.174 28 H 0.057 0.943 29 H 0.042 0.958 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.413 0.587 34 H 0.053 0.947 35 H 0.093 0.907 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.104 0.896 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.091 0.909 42 H 0.062 0.938 43 H 0.412 0.588 44 H 0.043 0.957 45 H 0.032 0.968 46 H 0.258 0.742 47 H 0.072 0.928 48 H 0.062 0.938 49 H 0.086 0.914 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.997 -4.732 -9.798 21.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.162 4.162 3 C 0.049 3.951 4 H 0.130 0.870 5 N -0.356 5.356 6 C 0.408 3.592 7 O -0.463 6.463 8 O -0.287 6.287 9 C 0.088 3.912 10 C -0.239 4.239 11 C -0.194 4.194 12 C -0.235 4.235 13 C 0.291 3.709 14 O -0.463 6.463 15 N -0.337 5.337 16 C 0.055 3.945 17 C 0.002 3.998 18 C -0.539 4.539 19 H 0.082 0.918 20 C -0.174 4.174 21 N -0.543 5.543 22 Si 0.768 3.232 23 H -0.185 1.185 24 H -0.209 1.209 25 H -0.219 1.219 26 C -0.199 4.199 27 C -0.211 4.211 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.115 0.885 33 H 0.250 0.750 34 H 0.073 0.927 35 H 0.111 0.889 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.123 0.877 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.109 0.891 42 H 0.081 0.919 43 H 0.248 0.752 44 H 0.061 0.939 45 H 0.050 0.950 46 H 0.067 0.933 47 H 0.090 0.910 48 H 0.081 0.919 49 H 0.104 0.896 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -17.848 -4.453 -10.142 21.006 hybrid contribution 0.556 1.132 0.701 1.443 sum -17.292 -3.321 -9.441 19.980 Atomic orbital electron populations 1.21715 0.93519 1.01662 1.02163 1.21905 0.97821 0.92237 1.04218 1.20797 0.89871 0.96779 0.87684 0.86980 1.44426 1.14809 1.58936 1.17389 1.17925 0.82478 0.77034 0.81800 1.90899 1.52327 1.63701 1.39394 1.86331 1.38019 1.68341 1.36012 1.22448 0.77316 0.93114 0.98330 1.22496 1.03695 0.98129 0.99583 1.21892 1.03804 1.01058 0.92612 1.22465 0.99093 0.98519 1.03392 1.20817 0.90456 0.76124 0.83493 1.90649 1.66300 1.52166 1.37187 1.45750 1.08760 1.70624 1.08549 1.20627 0.78967 0.98247 0.96706 1.19057 0.97056 0.92832 0.90813 1.20712 1.10384 0.95525 1.27234 0.91781 1.25629 0.95615 0.99768 0.96367 1.70127 1.21099 1.25591 1.37477 0.85762 0.78646 0.79395 0.79372 1.18519 1.20922 1.21871 1.22437 0.91596 1.04223 1.01643 1.23042 1.02888 0.94103 1.01104 0.92397 0.93871 0.91372 0.90927 0.88511 0.74967 0.92747 0.88855 0.91671 0.91087 0.87723 0.91757 0.91318 0.89052 0.91894 0.75155 0.93858 0.94997 0.93327 0.90996 0.91921 0.89571 0.88897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.85 8.50 71.98 0.61 -2.24 16 2 C -0.12 -2.74 5.60 30.60 0.17 -2.57 16 3 C 0.16 4.36 2.66 44.24 0.12 4.48 16 4 H 0.11 3.18 7.58 -2.39 -0.02 3.16 16 5 N -0.69 -19.64 5.01 -573.73 -2.87 -22.51 16 6 C 0.65 18.42 6.59 129.79 0.85 19.27 16 7 O -0.57 -16.97 9.00 19.83 0.18 -16.79 16 8 O -0.37 -9.56 9.94 -55.45 -0.55 -10.11 16 9 C 0.12 2.45 1.13 -10.80 -0.01 2.44 16 10 C -0.18 -3.71 8.37 71.98 0.60 -3.11 16 11 C -0.14 -1.87 8.85 71.98 0.64 -1.24 16 12 C -0.18 -3.16 8.37 71.98 0.60 -2.56 16 13 C 0.51 17.67 7.04 87.66 0.62 18.29 16 14 O -0.58 -24.13 15.99 -3.04 -0.05 -24.18 16 15 N -0.69 -24.94 5.40 -463.07 -2.50 -27.44 16 16 C 0.18 7.77 5.52 86.38 0.48 8.25 16 17 C 0.00 0.14 1.41 -52.93 -0.07 0.07 16 18 C -0.50 -24.86 8.48 25.60 0.22 -24.64 16 19 H 0.06 3.08 7.82 -2.91 -0.02 3.06 16 20 C 0.03 1.41 5.39 84.66 0.46 1.87 16 21 N -0.91 -50.56 12.95 21.45 0.28 -50.28 16 22 Si 0.94 42.02 29.55 68.60 2.03 44.04 16 23 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 24 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 25 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 26 C -0.16 -7.02 9.48 30.62 0.29 -6.73 16 27 C -0.17 -6.52 9.95 30.62 0.30 -6.22 16 28 H 0.06 1.33 7.81 -2.39 -0.02 1.31 16 29 H 0.04 1.03 5.64 -2.38 -0.01 1.02 16 30 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.07 1.62 8.14 -2.39 -0.02 1.61 16 32 H 0.10 1.88 8.14 -2.38 -0.02 1.86 16 33 H 0.41 11.88 7.88 -92.71 -0.73 11.15 16 34 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.06 1.68 5.88 -2.39 -0.01 1.67 16 37 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.07 1.55 5.88 -2.39 -0.01 1.54 16 41 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.41 13.32 8.31 -92.71 -0.77 12.55 16 44 H 0.04 1.81 8.11 -2.39 -0.02 1.79 16 45 H 0.03 1.66 8.14 -2.38 -0.02 1.64 16 46 H 0.26 13.94 8.32 -92.71 -0.77 13.17 16 47 H 0.07 2.99 8.14 -2.39 -0.02 2.98 16 48 H 0.06 2.97 8.14 -2.39 -0.02 2.95 16 49 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 50 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 Total: -1.00 -62.43 401.85 1.82 -60.61 By element: Atomic # 1 Polarization: 41.87 SS G_CDS: -0.56 Total: 41.30 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: 5.87 Total: 5.35 kcal Atomic # 7 Polarization: -95.13 SS G_CDS: -5.09 Total: -100.23 kcal Atomic # 8 Polarization: -50.66 SS G_CDS: -0.42 Total: -51.08 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.04 kcal Total: -62.43 1.82 -60.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496494398.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.041 kcal (2) G-P(sol) polarization free energy of solvation -62.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds