Wall clock time and date at job start Tue Mar 31 2020 14:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47018 * 2 1 4 4 C 1.53001 * 109.47253 * 239.99932 * 2 1 3 5 5 O 1.45201 * 109.47171 * 119.99868 * 2 1 3 6 6 C 1.34639 * 117.00054 * 60.00337 * 5 2 1 7 7 O 1.21511 * 119.99987 * 0.02562 * 6 5 2 8 8 N 1.34777 * 119.99968 * 179.97438 * 6 5 2 9 9 C 1.46502 * 120.00010 * 179.97438 * 8 6 5 10 10 C 1.50698 * 109.47041 * 180.02562 * 9 8 6 11 11 O 1.21279 * 119.99808 * 0.02562 * 10 9 8 12 12 N 1.34778 * 120.00023 * 180.02562 * 10 9 8 13 13 C 1.46919 * 120.63255 * 179.97438 * 12 10 9 14 14 C 1.53195 * 108.89273 * 126.34238 * 13 12 10 15 15 C 1.53346 * 109.14901 * 54.57640 * 14 13 12 16 16 C 1.53004 * 109.41904 * 178.67276 * 15 14 13 17 17 C 1.50701 * 109.47085 * 295.13082 * 16 15 14 18 18 H 1.07998 * 120.00293 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99472 * 179.97438 * 17 16 15 20 20 N 1.31505 * 120.00682 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99519 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47133 * 60.00060 * 21 19 17 23 23 H 1.48503 * 109.46942 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.47295 * 299.99976 * 21 19 17 25 25 C 1.53034 * 109.61010 * 298.71225 * 15 14 13 26 26 C 1.46933 * 120.62741 * 0.02562 * 12 10 9 27 27 H 1.08994 * 109.47547 * 299.99652 * 1 2 3 28 28 H 1.08995 * 109.47438 * 60.00797 * 1 2 3 29 29 H 1.09002 * 109.46643 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47424 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.46550 * 300.00338 * 3 2 1 32 32 H 1.09001 * 109.46795 * 59.99462 * 3 2 1 33 33 H 1.08997 * 109.47094 * 300.00031 * 4 2 1 34 34 H 1.09004 * 109.47016 * 59.99981 * 4 2 1 35 35 H 1.09001 * 109.47424 * 179.97438 * 4 2 1 36 36 H 0.97002 * 119.99735 * 0.02562 * 8 6 5 37 37 H 1.09001 * 109.46466 * 60.00258 * 9 8 6 38 38 H 1.09001 * 109.47257 * 300.00468 * 9 8 6 39 39 H 1.09002 * 109.58751 * 246.20189 * 13 12 10 40 40 H 1.08996 * 109.58750 * 6.48373 * 13 12 10 41 41 H 1.08997 * 109.49914 * 174.65962 * 14 13 12 42 42 H 1.09002 * 109.49585 * 294.75599 * 14 13 12 43 43 H 1.09001 * 109.42242 * 58.75065 * 15 14 13 44 44 H 1.09001 * 109.46592 * 55.13132 * 16 15 14 45 45 H 1.08997 * 109.47133 * 175.12697 * 16 15 14 46 46 H 0.97001 * 120.00836 * 179.97438 * 20 19 17 47 47 H 1.08994 * 109.50232 * 301.42239 * 25 15 14 48 48 H 1.09007 * 109.52628 * 181.33900 * 25 15 14 49 49 H 1.08994 * 109.58580 * 353.38021 * 26 12 10 50 50 H 1.09006 * 109.57831 * 113.65514 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6523 -1.9723 1.3384 7 8 0.9517 -2.5098 0.5036 8 7 2.0681 -2.6657 2.4167 9 6 1.6741 -4.0669 2.5832 10 6 2.2653 -4.6065 3.8600 11 8 2.9481 -3.8911 4.5620 12 7 2.0353 -5.8843 4.2218 13 6 2.6052 -6.4250 5.4633 14 6 1.4770 -7.0297 6.3049 15 6 0.7146 -8.0575 5.4600 16 6 -0.3932 -8.6896 6.3051 17 6 0.2225 -9.4748 7.4344 18 1 1.2966 -9.5191 7.5386 19 6 -0.5854 -10.1368 8.3344 20 7 -1.8932 -10.0834 8.2073 21 14 0.1779 -11.1108 9.7338 22 1 0.9919 -10.2035 10.5821 23 1 -0.8973 -11.7241 10.5541 24 1 1.0460 -12.1795 9.1773 25 6 0.0957 -7.3649 4.2437 26 6 1.2106 -6.7634 3.3815 27 1 -0.3634 0.5137 0.8899 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1299 1.4426 0.0005 31 1 1.6765 1.9563 -0.8900 32 1 1.6765 1.9563 0.8900 33 1 1.6767 -1.7489 -1.2492 34 1 1.6767 -0.2074 -2.1392 35 1 3.1300 -0.7209 -1.2495 36 1 2.6277 -2.2367 3.0829 37 1 2.0399 -4.6500 1.7381 38 1 0.5872 -4.1357 2.6289 39 1 3.3365 -7.1970 5.2239 40 1 3.0891 -5.6242 6.0224 41 1 1.8996 -7.5175 7.1833 42 1 0.7946 -6.2402 6.6197 43 1 1.4029 -8.8333 5.1247 44 1 -1.0310 -7.9054 6.7132 45 1 -0.9900 -9.3559 5.6823 46 1 -2.4616 -10.5494 8.8403 47 1 -0.5738 -6.5724 4.5779 48 1 -0.4657 -8.0920 3.6569 49 1 0.7723 -6.1853 2.5681 50 1 1.8291 -7.5614 2.9706 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496509379.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:36 Heat of formation + Delta-G solvation = -135.521360 kcal Electronic energy + Delta-G solvation = -28185.042395 eV Core-core repulsion = 24211.741108 eV Total energy + Delta-G solvation = -3973.301287 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.07729 -40.19831 -37.88624 -37.23996 -34.88717 -34.18986 -34.05343 -32.19984 -31.02010 -28.84006 -27.73244 -27.67765 -27.42788 -24.66975 -23.11476 -22.44457 -21.79118 -20.48160 -19.96434 -19.00962 -18.37682 -17.05302 -16.66032 -16.60776 -16.32322 -16.08294 -15.61829 -15.06394 -14.67373 -14.60075 -14.55705 -13.97015 -13.78021 -13.70032 -13.42349 -13.03725 -12.95592 -12.81606 -12.76437 -12.42311 -12.23581 -12.21496 -12.20635 -11.92532 -11.73493 -11.62132 -11.22736 -11.10023 -10.82581 -10.72343 -10.65433 -10.48326 -10.32646 -10.28628 -9.94024 -9.69245 -9.52114 -9.33338 -9.02841 -8.51910 -8.37643 -6.02613 -4.04820 1.80504 2.41886 2.61065 2.96922 3.30862 3.36033 3.37774 3.90508 4.23000 4.39296 4.43092 4.44098 4.58189 4.91798 5.00215 5.06115 5.14466 5.21979 5.26167 5.30100 5.31729 5.34956 5.36857 5.45961 5.50759 5.54456 5.55551 5.66192 5.72166 5.82768 5.89149 5.97738 5.98316 6.08921 6.24387 6.27107 6.28922 6.45275 6.54389 6.90521 6.94534 7.05623 7.17718 7.33803 7.62292 7.76488 7.96239 7.97480 8.13772 8.38633 9.01299 9.59228 11.08506 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.031708 B = 0.001989 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.847989 B =14073.993974 C =14379.815039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.136 3.864 3 C -0.141 4.141 4 C -0.184 4.184 5 O -0.362 6.362 6 C 0.655 3.345 7 O -0.569 6.569 8 N -0.699 5.699 9 C 0.119 3.881 10 C 0.509 3.491 11 O -0.545 6.545 12 N -0.597 5.597 13 C 0.109 3.891 14 C -0.118 4.118 15 C -0.082 4.082 16 C 0.028 3.972 17 C -0.518 4.518 18 H 0.055 0.945 19 C 0.057 3.943 20 N -0.895 5.895 21 Si 0.890 3.110 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 C -0.131 4.131 26 C 0.102 3.898 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.417 0.583 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.067 0.933 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.015 0.985 45 H 0.016 0.984 46 H 0.261 0.739 47 H 0.063 0.937 48 H 0.074 0.926 49 H 0.079 0.921 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.568 18.326 -17.903 26.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.198 4.198 4 C -0.241 4.241 5 O -0.277 6.277 6 C 0.408 3.592 7 O -0.459 6.459 8 N -0.362 5.362 9 C -0.007 4.007 10 C 0.296 3.704 11 O -0.424 6.424 12 N -0.330 5.330 13 C -0.013 4.013 14 C -0.156 4.156 15 C -0.101 4.101 16 C -0.009 4.009 17 C -0.556 4.556 18 H 0.074 0.926 19 C -0.145 4.145 20 N -0.534 5.534 21 Si 0.718 3.282 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.203 1.203 25 C -0.169 4.169 26 C -0.021 4.021 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.107 0.893 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.107 0.893 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.256 0.744 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.085 0.915 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.034 0.966 45 H 0.034 0.966 46 H 0.070 0.930 47 H 0.082 0.918 48 H 0.093 0.907 49 H 0.098 0.902 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.413 18.428 -17.900 26.739 hybrid contribution 0.404 -0.537 1.074 1.267 sum 7.817 17.891 -16.826 25.774 Atomic orbital electron populations 1.22523 0.93865 1.05191 1.02554 1.22101 0.94480 0.91522 0.82007 1.21865 1.02292 0.92485 1.03175 1.22522 1.01570 1.03559 0.96429 1.86314 1.71483 1.23356 1.46534 1.17893 0.78787 0.80631 0.81916 1.90908 1.41188 1.70482 1.43313 1.44316 1.55834 1.11638 1.24390 1.21065 1.01599 0.81091 0.96929 1.20287 0.81033 0.82176 0.86945 1.90685 1.40109 1.57233 1.54346 1.48104 1.50314 1.10357 1.24179 1.21848 0.96593 0.98542 0.84303 1.21960 0.96492 0.98546 0.98602 1.21263 0.98916 0.95874 0.94000 1.19118 0.92613 0.95266 0.93911 1.21190 0.92836 1.30527 1.11062 0.92638 1.25018 0.94826 0.96677 0.97932 1.69942 1.03010 1.43398 1.37090 0.86699 0.78799 0.80374 0.82359 1.20266 1.21370 1.20298 1.22045 0.96755 1.00348 0.97743 1.21972 0.93200 0.93856 0.93062 0.92084 0.91105 0.89285 0.91437 0.90095 0.91396 0.89303 0.91109 0.92161 0.74439 0.88061 0.87880 0.91516 0.89508 0.89576 0.92279 0.92221 0.96631 0.96559 0.92969 0.91832 0.90740 0.90246 0.90855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.58 8.37 37.16 0.31 -1.27 16 2 C 0.14 1.19 1.13 -90.62 -0.10 1.08 16 3 C -0.14 -0.87 8.85 37.16 0.33 -0.54 16 4 C -0.18 -1.52 8.37 37.16 0.31 -1.21 16 5 O -0.36 -3.99 9.94 -40.32 -0.40 -4.39 16 6 C 0.65 7.88 8.06 54.06 0.44 8.32 16 7 O -0.57 -7.61 11.88 -19.28 -0.23 -7.84 16 8 N -0.70 -7.91 5.53 -66.47 -0.37 -8.28 16 9 C 0.12 1.27 4.50 -5.19 -0.02 1.25 16 10 C 0.51 6.67 7.77 -10.99 -0.09 6.58 16 11 O -0.55 -8.65 15.08 5.56 0.08 -8.56 16 12 N -0.60 -7.80 2.97 -172.74 -0.51 -8.32 16 13 C 0.11 1.57 6.42 -3.71 -0.02 1.54 16 14 C -0.12 -2.03 5.21 -26.45 -0.14 -2.16 16 15 C -0.08 -1.49 2.10 -90.42 -0.19 -1.68 16 16 C 0.03 0.67 4.45 -27.88 -0.12 0.55 16 17 C -0.52 -13.81 8.39 -34.44 -0.29 -14.10 16 18 H 0.06 1.43 7.06 -52.49 -0.37 1.05 16 19 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 20 N -0.90 -26.26 13.28 55.43 0.74 -25.52 16 21 Si 0.89 21.15 29.54 -169.99 -5.02 16.12 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 C -0.13 -1.90 5.37 -26.59 -0.14 -2.04 16 26 C 0.10 1.16 6.34 -3.68 -0.02 1.13 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.09 0.96 5.88 -51.93 -0.31 0.66 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 0.93 5.88 -51.93 -0.31 0.63 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.42 4.73 7.55 -40.82 -0.31 4.42 16 37 H 0.10 0.94 7.94 -51.93 -0.41 0.53 16 38 H 0.10 1.04 7.69 -51.93 -0.40 0.64 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.09 1.30 7.00 -51.93 -0.36 0.94 16 41 H 0.09 1.60 6.93 -51.93 -0.36 1.24 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 47 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 48 H 0.07 1.04 8.14 -51.92 -0.42 0.62 16 49 H 0.08 0.71 5.93 -51.93 -0.31 0.40 16 50 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 392.65 15.07 5.92 5.92 Total: -1.00 -31.48 392.65 -8.26 -39.73 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -8.61 Total: 2.23 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: 0.15 Total: -1.09 kcal Atomic # 7 Polarization: -41.97 SS G_CDS: -0.14 Total: -42.12 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -0.55 Total: -20.80 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.48 -8.26 -39.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496509379.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.789 kcal (2) G-P(sol) polarization free energy of solvation -31.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds