Wall clock time and date at job start Tue Mar 31 2020 14:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47018 * 2 1 4 4 C 1.53001 * 109.47253 * 239.99932 * 2 1 3 5 5 O 1.45201 * 109.47171 * 119.99868 * 2 1 3 6 6 C 1.34639 * 117.00054 * 60.00337 * 5 2 1 7 7 O 1.21511 * 119.99987 * 0.02562 * 6 5 2 8 8 N 1.34777 * 119.99968 * 179.97438 * 6 5 2 9 9 C 1.46502 * 120.00010 * 179.97438 * 8 6 5 10 10 C 1.50698 * 109.47041 * 180.02562 * 9 8 6 11 11 O 1.21279 * 119.99808 * 0.02562 * 10 9 8 12 12 N 1.34778 * 120.00023 * 180.02562 * 10 9 8 13 13 C 1.46919 * 120.63255 * 179.97438 * 12 10 9 14 14 C 1.53195 * 108.89273 * 126.34238 * 13 12 10 15 15 C 1.53346 * 109.14901 * 54.57640 * 14 13 12 16 16 C 1.53004 * 109.41904 * 178.67276 * 15 14 13 17 17 C 1.50701 * 109.47085 * 295.13082 * 16 15 14 18 18 H 1.07998 * 120.00293 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99472 * 179.97438 * 17 16 15 20 20 N 1.31505 * 120.00682 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99519 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47133 * 60.00060 * 21 19 17 23 23 H 1.48503 * 109.46942 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.47295 * 299.99976 * 21 19 17 25 25 C 1.53034 * 109.61010 * 298.71225 * 15 14 13 26 26 C 1.46933 * 120.62741 * 0.02562 * 12 10 9 27 27 H 1.08994 * 109.47547 * 299.99652 * 1 2 3 28 28 H 1.08995 * 109.47438 * 60.00797 * 1 2 3 29 29 H 1.09002 * 109.46643 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47424 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.46550 * 300.00338 * 3 2 1 32 32 H 1.09001 * 109.46795 * 59.99462 * 3 2 1 33 33 H 1.08997 * 109.47094 * 300.00031 * 4 2 1 34 34 H 1.09004 * 109.47016 * 59.99981 * 4 2 1 35 35 H 1.09001 * 109.47424 * 179.97438 * 4 2 1 36 36 H 0.97002 * 119.99735 * 0.02562 * 8 6 5 37 37 H 1.09001 * 109.46466 * 60.00258 * 9 8 6 38 38 H 1.09001 * 109.47257 * 300.00468 * 9 8 6 39 39 H 1.09002 * 109.58751 * 246.20189 * 13 12 10 40 40 H 1.08996 * 109.58750 * 6.48373 * 13 12 10 41 41 H 1.08997 * 109.49914 * 174.65962 * 14 13 12 42 42 H 1.09002 * 109.49585 * 294.75599 * 14 13 12 43 43 H 1.09001 * 109.42242 * 58.75065 * 15 14 13 44 44 H 1.09001 * 109.46592 * 55.13132 * 16 15 14 45 45 H 1.08997 * 109.47133 * 175.12697 * 16 15 14 46 46 H 0.97001 * 120.00836 * 179.97438 * 20 19 17 47 47 H 1.08994 * 109.50232 * 301.42239 * 25 15 14 48 48 H 1.09007 * 109.52628 * 181.33900 * 25 15 14 49 49 H 1.08994 * 109.58580 * 353.38021 * 26 12 10 50 50 H 1.09006 * 109.57831 * 113.65514 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6523 -1.9723 1.3384 7 8 0.9517 -2.5098 0.5036 8 7 2.0681 -2.6657 2.4167 9 6 1.6741 -4.0669 2.5832 10 6 2.2653 -4.6065 3.8600 11 8 2.9481 -3.8911 4.5620 12 7 2.0353 -5.8843 4.2218 13 6 2.6052 -6.4250 5.4633 14 6 1.4770 -7.0297 6.3049 15 6 0.7146 -8.0575 5.4600 16 6 -0.3932 -8.6896 6.3051 17 6 0.2225 -9.4748 7.4344 18 1 1.2966 -9.5191 7.5386 19 6 -0.5854 -10.1368 8.3344 20 7 -1.8932 -10.0834 8.2073 21 14 0.1779 -11.1108 9.7338 22 1 0.9919 -10.2035 10.5821 23 1 -0.8973 -11.7241 10.5541 24 1 1.0460 -12.1795 9.1773 25 6 0.0957 -7.3649 4.2437 26 6 1.2106 -6.7634 3.3815 27 1 -0.3634 0.5137 0.8899 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1299 1.4426 0.0005 31 1 1.6765 1.9563 -0.8900 32 1 1.6765 1.9563 0.8900 33 1 1.6767 -1.7489 -1.2492 34 1 1.6767 -0.2074 -2.1392 35 1 3.1300 -0.7209 -1.2495 36 1 2.6277 -2.2367 3.0829 37 1 2.0399 -4.6500 1.7381 38 1 0.5872 -4.1357 2.6289 39 1 3.3365 -7.1970 5.2239 40 1 3.0891 -5.6242 6.0224 41 1 1.8996 -7.5175 7.1833 42 1 0.7946 -6.2402 6.6197 43 1 1.4029 -8.8333 5.1247 44 1 -1.0310 -7.9054 6.7132 45 1 -0.9900 -9.3559 5.6823 46 1 -2.4616 -10.5494 8.8403 47 1 -0.5738 -6.5724 4.5779 48 1 -0.4657 -8.0920 3.6569 49 1 0.7723 -6.1853 2.5681 50 1 1.8291 -7.5614 2.9706 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496509379.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:35 Heat of formation + Delta-G solvation = -155.631156 kcal Electronic energy + Delta-G solvation = -28185.914421 eV Core-core repulsion = 24211.741108 eV Total energy + Delta-G solvation = -3974.173313 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.94711 -41.24203 -38.98687 -38.21681 -35.81180 -35.73762 -34.81767 -34.01229 -32.18414 -30.25786 -28.72393 -28.32145 -28.26408 -26.28320 -24.24042 -23.67838 -23.04457 -21.39198 -21.20263 -20.07130 -19.36598 -18.40216 -17.96849 -17.57591 -17.47917 -17.05012 -16.60113 -16.52199 -15.93257 -15.49970 -15.39555 -15.24578 -14.88389 -14.75778 -14.46783 -14.40945 -14.20761 -13.90881 -13.74154 -13.36834 -13.32181 -13.05865 -12.98677 -12.87846 -12.83901 -12.74758 -12.47346 -12.44347 -12.33498 -12.31244 -12.09527 -11.81223 -11.37549 -11.31628 -11.18107 -11.13163 -11.02801 -10.76306 -10.50594 -10.38950 -9.67883 -8.16063 -6.24981 0.98733 1.40136 1.41233 1.42980 1.50419 1.70917 1.96834 2.42686 3.11906 3.17581 3.27197 3.77817 3.83095 3.92007 3.97865 4.04808 4.09918 4.20743 4.21985 4.24717 4.43942 4.54381 4.58055 4.65866 4.69578 4.74482 4.80591 4.82271 4.88091 4.89390 4.91339 4.96945 5.00657 5.11836 5.19900 5.30689 5.32243 5.34791 5.36941 5.40089 5.54375 5.55041 5.59175 5.82589 5.91778 6.27564 6.30029 6.32588 6.91993 6.93926 7.25825 7.43503 8.95292 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.031708 B = 0.001989 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.847989 B =14073.993974 C =14379.815039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.123 3.877 3 C -0.137 4.137 4 C -0.179 4.179 5 O -0.370 6.370 6 C 0.653 3.347 7 O -0.585 6.585 8 N -0.700 5.700 9 C 0.124 3.876 10 C 0.511 3.489 11 O -0.575 6.575 12 N -0.599 5.599 13 C 0.119 3.881 14 C -0.111 4.111 15 C -0.075 4.075 16 C 0.032 3.968 17 C -0.528 4.528 18 H 0.064 0.936 19 C -0.003 4.003 20 N -0.935 5.935 21 Si 0.957 3.043 22 H -0.269 1.269 23 H -0.288 1.288 24 H -0.266 1.266 25 C -0.127 4.127 26 C 0.107 3.893 27 H 0.059 0.941 28 H 0.092 0.908 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.104 0.896 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.091 0.909 35 H 0.061 0.939 36 H 0.417 0.583 37 H 0.123 0.877 38 H 0.113 0.887 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.068 0.932 42 H 0.040 0.960 43 H 0.065 0.935 44 H -0.017 1.017 45 H -0.008 1.008 46 H 0.261 0.739 47 H 0.052 0.948 48 H 0.082 0.918 49 H 0.112 0.888 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.044 19.038 -19.540 28.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.087 3.913 3 C -0.194 4.194 4 C -0.236 4.236 5 O -0.284 6.284 6 C 0.406 3.594 7 O -0.475 6.475 8 N -0.362 5.362 9 C -0.001 4.001 10 C 0.299 3.701 11 O -0.456 6.456 12 N -0.330 5.330 13 C -0.003 4.003 14 C -0.149 4.149 15 C -0.094 4.094 16 C -0.005 4.005 17 C -0.566 4.566 18 H 0.082 0.918 19 C -0.200 4.200 20 N -0.576 5.576 21 Si 0.783 3.217 22 H -0.194 1.194 23 H -0.214 1.214 24 H -0.191 1.191 25 C -0.165 4.165 26 C -0.014 4.014 27 H 0.078 0.922 28 H 0.110 0.890 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.122 0.878 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.110 0.890 35 H 0.080 0.920 36 H 0.255 0.745 37 H 0.141 0.859 38 H 0.131 0.869 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.086 0.914 42 H 0.059 0.941 43 H 0.084 0.916 44 H 0.002 0.998 45 H 0.010 0.990 46 H 0.069 0.931 47 H 0.071 0.929 48 H 0.100 0.900 49 H 0.130 0.870 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 8.901 19.142 -19.554 28.775 hybrid contribution -0.103 -0.726 1.574 1.736 sum 8.797 18.417 -17.980 27.200 Atomic orbital electron populations 1.22484 0.93872 1.03851 1.03571 1.22475 0.94687 0.92701 0.81451 1.21896 1.02442 0.90739 1.04307 1.22475 1.01640 1.02363 0.97157 1.86330 1.71555 1.22851 1.47690 1.17981 0.78626 0.80965 0.81797 1.90904 1.41883 1.70903 1.43842 1.44357 1.55697 1.11911 1.24216 1.21117 1.01937 0.80992 0.96090 1.20641 0.80390 0.81695 0.87333 1.90676 1.41499 1.57905 1.55480 1.48143 1.50378 1.10706 1.23822 1.21629 0.95463 0.98636 0.84594 1.21811 0.96985 0.97646 0.98470 1.21114 0.97149 0.96343 0.94748 1.19025 0.93729 0.93888 0.93883 1.21661 0.93353 1.30089 1.11543 0.91823 1.25932 0.95262 0.98026 1.00808 1.70084 1.04492 1.44720 1.38305 0.85618 0.77965 0.79066 0.79102 1.19427 1.21399 1.19116 1.21958 0.97758 1.00037 0.96719 1.22074 0.92151 0.94565 0.92619 0.92222 0.88951 0.91692 0.91227 0.87785 0.91438 0.91622 0.88996 0.91965 0.74527 0.85945 0.86933 0.89754 0.90107 0.91360 0.94104 0.91636 0.99829 0.99003 0.93070 0.92931 0.89969 0.87001 0.88723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.87 8.37 71.98 0.60 -2.26 16 2 C 0.12 1.97 1.13 -10.79 -0.01 1.96 16 3 C -0.14 -1.39 8.85 71.98 0.64 -0.76 16 4 C -0.18 -2.70 8.37 71.98 0.60 -2.09 16 5 O -0.37 -7.80 9.94 -55.48 -0.55 -8.35 16 6 C 0.65 15.09 8.06 129.79 1.05 16.14 16 7 O -0.58 -15.09 11.88 19.80 0.24 -14.85 16 8 N -0.70 -14.97 5.53 -594.61 -3.29 -18.25 16 9 C 0.12 2.37 4.50 85.63 0.39 2.76 16 10 C 0.51 12.48 7.77 87.66 0.68 13.16 16 11 O -0.58 -17.69 15.08 -3.03 -0.05 -17.74 16 12 N -0.60 -14.39 2.97 -818.81 -2.43 -16.82 16 13 C 0.12 3.27 6.42 86.36 0.55 3.83 16 14 C -0.11 -3.83 5.21 30.78 0.16 -3.67 16 15 C -0.07 -2.72 2.10 -10.66 -0.02 -2.74 16 16 C 0.03 1.58 4.45 29.85 0.13 1.72 16 17 C -0.53 -28.66 8.39 25.60 0.21 -28.45 16 18 H 0.06 3.27 7.06 -2.91 -0.02 3.25 16 19 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 20 N -0.94 -56.38 13.28 21.45 0.28 -56.09 16 21 Si 0.96 43.68 29.54 68.60 2.03 45.71 16 22 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 23 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 24 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 25 C -0.13 -3.53 5.37 30.69 0.16 -3.37 16 26 C 0.11 2.12 6.34 86.38 0.55 2.67 16 27 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.06 1.37 5.88 -2.39 -0.01 1.36 16 30 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.06 1.32 5.88 -2.39 -0.01 1.31 16 34 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.42 9.12 7.55 -92.71 -0.70 8.42 16 37 H 0.12 1.87 7.94 -2.39 -0.02 1.85 16 38 H 0.11 1.99 7.69 -2.39 -0.02 1.98 16 39 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.08 2.36 7.00 -2.39 -0.02 2.34 16 41 H 0.07 2.57 6.93 -2.39 -0.02 2.55 16 42 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 44 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 45 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 46 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 47 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 48 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 49 H 0.11 1.55 5.93 -2.39 -0.01 1.54 16 50 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 Total: -1.00 -70.18 392.65 2.61 -67.57 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: 0.23 Total: 19.66 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: 6.16 Total: -0.83 kcal Atomic # 7 Polarization: -85.73 SS G_CDS: -5.44 Total: -91.17 kcal Atomic # 8 Polarization: -40.58 SS G_CDS: -0.36 Total: -40.94 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -70.18 2.61 -67.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496509379.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.058 kcal (2) G-P(sol) polarization free energy of solvation -70.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds