Wall clock time and date at job start Tue Mar 31 2020 14:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47417 * 2 1 4 4 C 1.52996 * 109.47227 * 239.99634 * 2 1 3 5 5 O 1.45205 * 109.46956 * 119.99896 * 2 1 3 6 6 C 1.34638 * 117.00095 * 60.00075 * 5 2 1 7 7 O 1.21518 * 119.99716 * 359.97438 * 6 5 2 8 8 N 1.34772 * 120.00405 * 180.02562 * 6 5 2 9 9 C 1.46499 * 120.00199 * 185.05436 * 8 6 5 10 10 C 1.53004 * 109.46936 * 269.99514 * 9 8 6 11 11 C 1.50698 * 109.47094 * 179.97438 * 10 9 8 12 12 O 1.21280 * 120.00064 * 0.02562 * 11 10 9 13 13 N 1.34782 * 119.99889 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99732 * 180.02562 * 13 11 10 15 15 C 1.53004 * 109.46936 * 180.02562 * 14 13 11 16 16 C 1.50698 * 109.47094 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99877 * 0.02562 * 16 15 14 18 18 C 1.37876 * 119.99681 * 180.02562 * 16 15 14 19 19 N 1.31512 * 120.00217 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99576 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47313 * 90.00295 * 20 18 16 22 22 H 1.48501 * 109.47279 * 209.99812 * 20 18 16 23 23 H 1.48501 * 109.47476 * 329.99791 * 20 18 16 24 24 C 1.46505 * 119.99517 * 5.05019 * 8 6 5 25 25 C 1.52995 * 117.49510 * 182.82328 * 24 8 6 26 26 C 1.53003 * 117.49494 * 114.16474 * 24 8 6 27 27 H 1.08994 * 109.47031 * 300.00502 * 1 2 3 28 28 H 1.09007 * 109.46630 * 59.99925 * 1 2 3 29 29 H 1.08992 * 109.47304 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47051 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47008 * 299.99941 * 3 2 1 32 32 H 1.08998 * 109.46954 * 59.99848 * 3 2 1 33 33 H 1.09002 * 109.47879 * 300.00368 * 4 2 1 34 34 H 1.09000 * 109.46876 * 60.00256 * 4 2 1 35 35 H 1.09002 * 109.47363 * 179.97438 * 4 2 1 36 36 H 1.08993 * 109.47398 * 29.99779 * 9 8 6 37 37 H 1.09003 * 109.47037 * 150.00359 * 9 8 6 38 38 H 1.09002 * 109.47041 * 300.00308 * 10 9 8 39 39 H 1.09005 * 109.46804 * 59.99820 * 10 9 8 40 40 H 0.97003 * 119.99948 * 0.02562 * 13 11 10 41 41 H 1.08993 * 109.47398 * 300.00282 * 14 13 11 42 42 H 1.08999 * 109.46684 * 60.00497 * 14 13 11 43 43 H 1.09002 * 109.47041 * 300.00308 * 15 14 13 44 44 H 1.09005 * 109.46804 * 59.99820 * 15 14 13 45 45 H 0.97000 * 120.00006 * 180.02562 * 19 18 16 46 46 H 1.09002 * 115.55239 * 328.49236 * 24 8 6 47 47 H 1.09001 * 117.50387 * 359.97438 * 25 24 8 48 48 H 1.09005 * 117.50132 * 145.02591 * 25 24 8 49 49 H 1.08999 * 117.49234 * 214.97477 * 26 24 8 50 50 H 1.08991 * 117.50303 * 359.97438 * 26 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6522 -1.9723 1.3384 7 8 0.9508 -2.5094 0.5040 8 7 2.0671 -2.6654 2.4172 9 6 1.7671 -4.0950 2.5292 10 6 0.4271 -4.2804 3.2441 11 6 0.1182 -5.7510 3.3588 12 8 0.8937 -6.5701 2.9131 13 7 -1.0193 -6.1559 3.9576 14 6 -1.3193 -7.5855 4.0696 15 6 -2.6594 -7.7709 4.7843 16 6 -2.9683 -9.2414 4.8990 17 1 -2.2777 -9.9708 4.5021 18 6 -4.1326 -9.6555 5.5105 19 7 -4.9737 -8.7673 5.9933 20 14 -4.5151 -11.4784 5.6532 21 1 -3.9540 -12.0040 6.9237 22 1 -5.9866 -11.6777 5.6422 23 1 -3.9090 -12.2027 4.5072 24 6 2.8182 -1.9892 3.4779 25 6 3.3182 -2.8437 4.6443 26 6 2.1527 -1.8730 4.8507 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 -1.7490 -1.2493 34 1 1.6767 -0.2075 -2.1391 35 1 3.1300 -0.7209 -1.2494 36 1 1.7112 -4.5337 1.5330 37 1 2.5544 -4.5878 3.0997 38 1 0.4831 -3.8417 4.2404 39 1 -0.3602 -3.7875 2.6737 40 1 -1.6394 -5.5008 4.3144 41 1 -1.3756 -8.0240 3.0734 42 1 -0.5318 -8.0783 4.6396 43 1 -2.6035 -7.3322 5.7806 44 1 -3.4466 -7.2779 4.2139 45 1 -5.7926 -9.0587 6.4238 46 1 3.4495 -1.1622 3.1529 47 1 3.0880 -3.9089 4.6228 48 1 4.2783 -2.5787 5.0871 49 1 2.3467 -0.9697 5.4291 50 1 1.1561 -2.2993 4.9646 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496588616.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:56 Heat of formation + Delta-G solvation = -102.427627 kcal Electronic energy + Delta-G solvation = -28250.658170 eV Core-core repulsion = 24278.791935 eV Total energy + Delta-G solvation = -3971.866235 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.12903 -39.50565 -38.54919 -36.93304 -34.93000 -34.35658 -33.85999 -32.85424 -31.20813 -29.43446 -27.71038 -27.63606 -25.60466 -24.14203 -23.15528 -22.67749 -21.42717 -20.91180 -19.97146 -19.41462 -18.50495 -17.14398 -16.64041 -16.45920 -16.21637 -15.71647 -15.44590 -15.21419 -15.09956 -14.66995 -14.56573 -14.43817 -13.85852 -13.69718 -13.25746 -13.24078 -12.82120 -12.59452 -12.49565 -12.31412 -12.28416 -12.17882 -12.11138 -11.99765 -11.71433 -11.57402 -11.29695 -11.21029 -11.04635 -10.96318 -10.87733 -10.64393 -10.60198 -10.33461 -10.17689 -9.82892 -9.49243 -9.23199 -8.83151 -8.55156 -8.36003 -6.09659 -4.12516 1.84263 2.57311 2.97614 3.29323 3.35334 3.38285 3.40753 3.50707 3.74290 4.38813 4.42043 4.44026 4.47002 4.55966 4.61536 4.62586 4.81956 4.85064 5.11536 5.16408 5.19024 5.24703 5.27011 5.27372 5.39574 5.44420 5.46355 5.51431 5.58366 5.63318 5.66579 5.70217 5.81651 5.89986 6.02951 6.04783 6.21313 6.24585 6.33704 6.34764 6.73476 6.90580 7.12005 7.51017 7.61181 7.88335 7.99116 8.13206 8.27156 8.62259 8.93491 9.52330 11.01932 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.019040 B = 0.002145 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.260320 B =13051.639185 C =13674.378010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.135 3.865 3 C -0.140 4.140 4 C -0.184 4.184 5 O -0.361 6.361 6 C 0.656 3.344 7 O -0.559 6.559 8 N -0.569 5.569 9 C 0.145 3.855 10 C -0.162 4.162 11 C 0.511 3.489 12 O -0.553 6.553 13 N -0.721 5.721 14 C 0.121 3.879 15 C 0.012 3.988 16 C -0.521 4.521 17 H 0.059 0.941 18 C 0.058 3.942 19 N -0.894 5.894 20 Si 0.897 3.103 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.272 1.272 24 C 0.074 3.926 25 C -0.183 4.183 26 C -0.193 4.193 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.398 0.602 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.022 0.978 44 H 0.022 0.978 45 H 0.262 0.738 46 H 0.133 0.867 47 H 0.106 0.894 48 H 0.106 0.894 49 H 0.103 0.897 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.492 23.557 -7.540 29.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.098 3.902 3 C -0.197 4.197 4 C -0.241 4.241 5 O -0.276 6.276 6 C 0.411 3.589 7 O -0.448 6.448 8 N -0.307 5.307 9 C 0.023 3.977 10 C -0.204 4.204 11 C 0.296 3.704 12 O -0.432 6.432 13 N -0.371 5.371 14 C -0.001 4.001 15 C -0.025 4.025 16 C -0.560 4.560 17 H 0.078 0.922 18 C -0.143 4.143 19 N -0.533 5.533 20 Si 0.725 3.275 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.197 1.197 24 C -0.031 4.031 25 C -0.221 4.221 26 C -0.231 4.231 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.107 0.893 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.107 0.893 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.111 0.889 39 H 0.116 0.884 40 H 0.231 0.769 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.040 0.960 44 H 0.041 0.959 45 H 0.072 0.928 46 H 0.151 0.849 47 H 0.124 0.876 48 H 0.125 0.875 49 H 0.121 0.879 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 16.638 22.860 -8.116 29.415 hybrid contribution -0.786 -0.585 0.409 1.062 sum 15.852 22.275 -7.707 28.405 Atomic orbital electron populations 1.22514 0.93896 1.05215 1.02473 1.22075 0.94465 0.91476 0.82171 1.21849 1.02130 0.92578 1.03111 1.22522 1.01467 1.03643 0.96473 1.86305 1.71313 1.23643 1.46298 1.17939 0.78667 0.80549 0.81751 1.90941 1.40294 1.70288 1.43238 1.46294 1.56688 1.09361 1.18361 1.21274 0.95962 0.76948 1.03471 1.22156 1.00156 0.94968 1.03085 1.20312 0.81822 0.90150 0.78133 1.90682 1.48411 1.55416 1.48651 1.46341 1.21721 1.10448 1.58558 1.21731 0.99854 0.77769 1.00759 1.19326 0.89799 0.97852 0.95534 1.21052 1.05361 0.91568 1.38033 0.92239 1.25003 0.96097 0.97971 0.95273 1.69955 1.11168 1.33460 1.38722 0.86506 0.77410 0.85008 0.78592 1.20560 1.21168 1.19720 1.21774 0.99007 0.99452 0.82852 1.23420 0.99451 0.98642 1.00577 1.23538 0.98228 1.01958 0.99414 0.92144 0.91169 0.89285 0.91558 0.90177 0.91480 0.89286 0.91167 0.92244 0.88392 0.88595 0.88892 0.88433 0.76875 0.92528 0.92532 0.95971 0.95940 0.92845 0.84904 0.87568 0.87543 0.87883 0.88137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.67 8.37 37.16 0.31 -1.36 16 2 C 0.13 1.20 1.13 -90.62 -0.10 1.09 16 3 C -0.14 -0.84 8.85 37.16 0.33 -0.51 16 4 C -0.18 -1.64 8.37 37.16 0.31 -1.33 16 5 O -0.36 -3.83 8.90 -40.32 -0.36 -4.19 16 6 C 0.66 8.08 7.69 54.05 0.42 8.50 16 7 O -0.56 -8.20 11.51 -19.29 -0.22 -8.43 16 8 N -0.57 -6.15 2.80 -171.86 -0.48 -6.63 16 9 C 0.14 1.75 4.20 -4.04 -0.02 1.73 16 10 C -0.16 -2.00 5.98 -27.88 -0.17 -2.16 16 11 C 0.51 8.46 7.83 -10.98 -0.09 8.38 16 12 O -0.55 -11.05 15.98 5.56 0.09 -10.96 16 13 N -0.72 -12.54 5.56 -60.30 -0.33 -12.87 16 14 C 0.12 2.59 5.61 -4.04 -0.02 2.56 16 15 C 0.01 0.31 5.09 -27.88 -0.14 0.16 16 16 C -0.52 -14.53 9.11 -34.44 -0.31 -14.85 16 17 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -26.21 13.29 55.43 0.74 -25.48 16 20 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 23 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 24 C 0.07 0.61 6.16 -67.93 -0.42 0.19 16 25 C -0.18 -1.32 9.74 -26.69 -0.26 -1.58 16 26 C -0.19 -1.41 10.19 -26.69 -0.27 -1.68 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.09 1.05 5.88 -51.93 -0.31 0.74 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.09 1.03 5.88 -51.93 -0.31 0.72 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.10 1.40 7.45 -51.93 -0.39 1.01 16 37 H 0.10 1.09 5.95 -51.93 -0.31 0.78 16 38 H 0.09 0.95 5.89 -51.93 -0.31 0.65 16 39 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.40 6.01 8.47 -40.82 -0.35 5.67 16 41 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 42 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 46 H 0.13 0.98 7.71 -51.93 -0.40 0.58 16 47 H 0.11 0.88 6.11 -51.93 -0.32 0.56 16 48 H 0.11 0.60 8.14 -51.93 -0.42 0.17 16 49 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 50 H 0.10 0.82 6.11 -51.93 -0.32 0.50 16 LS Contribution 402.20 15.07 6.06 6.06 Total: -1.00 -32.76 402.20 -8.52 -41.28 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -8.45 Total: 4.08 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -0.53 Total: 0.68 kcal Atomic # 7 Polarization: -44.90 SS G_CDS: -0.08 Total: -44.98 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.49 Total: -23.57 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.76 -8.52 -41.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496588616.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.148 kcal (2) G-P(sol) polarization free energy of solvation -32.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds