Wall clock time and date at job start Tue Mar 31 2020 14:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47417 * 2 1 4 4 C 1.52996 * 109.47227 * 239.99634 * 2 1 3 5 5 O 1.45205 * 109.46956 * 119.99896 * 2 1 3 6 6 C 1.34638 * 117.00095 * 60.00075 * 5 2 1 7 7 O 1.21518 * 119.99716 * 359.97438 * 6 5 2 8 8 N 1.34772 * 120.00405 * 180.02562 * 6 5 2 9 9 C 1.46499 * 120.00199 * 185.05436 * 8 6 5 10 10 C 1.53004 * 109.46936 * 269.99514 * 9 8 6 11 11 C 1.50698 * 109.47094 * 179.97438 * 10 9 8 12 12 O 1.21280 * 120.00064 * 0.02562 * 11 10 9 13 13 N 1.34782 * 119.99889 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99732 * 180.02562 * 13 11 10 15 15 C 1.53004 * 109.46936 * 180.02562 * 14 13 11 16 16 C 1.50698 * 109.47094 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99877 * 0.02562 * 16 15 14 18 18 C 1.37876 * 119.99681 * 180.02562 * 16 15 14 19 19 N 1.31512 * 120.00217 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99576 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47313 * 90.00295 * 20 18 16 22 22 H 1.48501 * 109.47279 * 209.99812 * 20 18 16 23 23 H 1.48501 * 109.47476 * 329.99791 * 20 18 16 24 24 C 1.46505 * 119.99517 * 5.05019 * 8 6 5 25 25 C 1.52995 * 117.49510 * 182.82328 * 24 8 6 26 26 C 1.53003 * 117.49494 * 114.16474 * 24 8 6 27 27 H 1.08994 * 109.47031 * 300.00502 * 1 2 3 28 28 H 1.09007 * 109.46630 * 59.99925 * 1 2 3 29 29 H 1.08992 * 109.47304 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47051 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47008 * 299.99941 * 3 2 1 32 32 H 1.08998 * 109.46954 * 59.99848 * 3 2 1 33 33 H 1.09002 * 109.47879 * 300.00368 * 4 2 1 34 34 H 1.09000 * 109.46876 * 60.00256 * 4 2 1 35 35 H 1.09002 * 109.47363 * 179.97438 * 4 2 1 36 36 H 1.08993 * 109.47398 * 29.99779 * 9 8 6 37 37 H 1.09003 * 109.47037 * 150.00359 * 9 8 6 38 38 H 1.09002 * 109.47041 * 300.00308 * 10 9 8 39 39 H 1.09005 * 109.46804 * 59.99820 * 10 9 8 40 40 H 0.97003 * 119.99948 * 0.02562 * 13 11 10 41 41 H 1.08993 * 109.47398 * 300.00282 * 14 13 11 42 42 H 1.08999 * 109.46684 * 60.00497 * 14 13 11 43 43 H 1.09002 * 109.47041 * 300.00308 * 15 14 13 44 44 H 1.09005 * 109.46804 * 59.99820 * 15 14 13 45 45 H 0.97000 * 120.00006 * 180.02562 * 19 18 16 46 46 H 1.09002 * 115.55239 * 328.49236 * 24 8 6 47 47 H 1.09001 * 117.50387 * 359.97438 * 25 24 8 48 48 H 1.09005 * 117.50132 * 145.02591 * 25 24 8 49 49 H 1.08999 * 117.49234 * 214.97477 * 26 24 8 50 50 H 1.08991 * 117.50303 * 359.97438 * 26 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6522 -1.9723 1.3384 7 8 0.9508 -2.5094 0.5040 8 7 2.0671 -2.6654 2.4172 9 6 1.7671 -4.0950 2.5292 10 6 0.4271 -4.2804 3.2441 11 6 0.1182 -5.7510 3.3588 12 8 0.8937 -6.5701 2.9131 13 7 -1.0193 -6.1559 3.9576 14 6 -1.3193 -7.5855 4.0696 15 6 -2.6594 -7.7709 4.7843 16 6 -2.9683 -9.2414 4.8990 17 1 -2.2777 -9.9708 4.5021 18 6 -4.1326 -9.6555 5.5105 19 7 -4.9737 -8.7673 5.9933 20 14 -4.5151 -11.4784 5.6532 21 1 -3.9540 -12.0040 6.9237 22 1 -5.9866 -11.6777 5.6422 23 1 -3.9090 -12.2027 4.5072 24 6 2.8182 -1.9892 3.4779 25 6 3.3182 -2.8437 4.6443 26 6 2.1527 -1.8730 4.8507 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 -1.7490 -1.2493 34 1 1.6767 -0.2075 -2.1391 35 1 3.1300 -0.7209 -1.2494 36 1 1.7112 -4.5337 1.5330 37 1 2.5544 -4.5878 3.0997 38 1 0.4831 -3.8417 4.2404 39 1 -0.3602 -3.7875 2.6737 40 1 -1.6394 -5.5008 4.3144 41 1 -1.3756 -8.0240 3.0734 42 1 -0.5318 -8.0783 4.6396 43 1 -2.6035 -7.3322 5.7806 44 1 -3.4466 -7.2779 4.2139 45 1 -5.7926 -9.0587 6.4238 46 1 3.4495 -1.1622 3.1529 47 1 3.0880 -3.9089 4.6228 48 1 4.2783 -2.5787 5.0871 49 1 2.3467 -0.9697 5.4291 50 1 1.1561 -2.2993 4.9646 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496588616.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:55 Heat of formation + Delta-G solvation = -122.652575 kcal Electronic energy + Delta-G solvation = -28251.535190 eV Core-core repulsion = 24278.791935 eV Total energy + Delta-G solvation = -3972.743254 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.00298 -40.80020 -39.43716 -37.76305 -36.64971 -35.11808 -34.83516 -34.73462 -32.43665 -31.14423 -28.34755 -28.26645 -27.19067 -25.58696 -23.96057 -23.29736 -22.88674 -22.13817 -21.33049 -20.21568 -19.34064 -18.61437 -18.11784 -17.53962 -17.29749 -16.88114 -16.66022 -16.45631 -16.20844 -16.16692 -15.51424 -15.32750 -15.14512 -14.67280 -14.52511 -14.32419 -14.08196 -13.97169 -13.31409 -13.26140 -13.21194 -13.06572 -12.95301 -12.86894 -12.83998 -12.70608 -12.55343 -12.49056 -12.30391 -12.24775 -12.02262 -11.84064 -11.68289 -11.50820 -11.47962 -11.36957 -11.04506 -10.88590 -10.61654 -10.03896 -9.68185 -8.25241 -6.35788 0.99796 1.40994 1.41604 1.53088 1.59879 1.65562 2.24457 2.44044 2.72998 2.89665 3.09419 3.68691 3.72236 3.77650 3.82070 3.83098 3.94643 3.97289 4.01403 4.13477 4.31688 4.42436 4.48598 4.51214 4.63087 4.63249 4.70658 4.78723 4.78837 4.84297 4.85389 4.87736 4.90952 4.95306 5.13544 5.14969 5.24571 5.27461 5.28850 5.30210 5.39182 5.47541 5.49115 5.56674 5.77322 6.14901 6.25678 6.57568 6.77459 7.21014 7.24912 7.33546 8.86572 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.019040 B = 0.002145 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.260320 B =13051.639185 C =13674.378010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.124 3.876 3 C -0.133 4.133 4 C -0.180 4.180 5 O -0.358 6.358 6 C 0.651 3.349 7 O -0.589 6.589 8 N -0.566 5.566 9 C 0.151 3.849 10 C -0.145 4.145 11 C 0.513 3.487 12 O -0.586 6.586 13 N -0.717 5.717 14 C 0.140 3.860 15 C 0.022 3.978 16 C -0.547 4.547 17 H 0.059 0.941 18 C 0.006 3.994 19 N -0.926 5.926 20 Si 0.966 3.034 21 H -0.271 1.271 22 H -0.280 1.280 23 H -0.267 1.267 24 C 0.059 3.941 25 C -0.177 4.177 26 C -0.187 4.187 27 H 0.063 0.937 28 H 0.088 0.912 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.100 0.900 32 H 0.071 0.929 33 H 0.057 0.943 34 H 0.089 0.911 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.105 0.895 38 H 0.121 0.879 39 H 0.099 0.901 40 H 0.410 0.590 41 H 0.043 0.957 42 H 0.050 0.950 43 H 0.010 0.990 44 H 0.006 0.994 45 H 0.266 0.734 46 H 0.145 0.855 47 H 0.095 0.905 48 H 0.127 0.873 49 H 0.122 0.878 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.432 25.001 -7.015 31.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.088 3.912 3 C -0.190 4.190 4 C -0.238 4.238 5 O -0.272 6.272 6 C 0.406 3.594 7 O -0.480 6.480 8 N -0.303 5.303 9 C 0.028 3.972 10 C -0.186 4.186 11 C 0.300 3.700 12 O -0.467 6.467 13 N -0.368 5.368 14 C 0.016 3.984 15 C -0.015 4.015 16 C -0.585 4.585 17 H 0.077 0.923 18 C -0.193 4.193 19 N -0.566 5.566 20 Si 0.790 3.210 21 H -0.196 1.196 22 H -0.205 1.205 23 H -0.191 1.191 24 C -0.044 4.044 25 C -0.214 4.214 26 C -0.225 4.225 27 H 0.082 0.918 28 H 0.107 0.893 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.118 0.882 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.108 0.892 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.123 0.877 38 H 0.139 0.861 39 H 0.117 0.883 40 H 0.246 0.754 41 H 0.062 0.938 42 H 0.069 0.931 43 H 0.029 0.971 44 H 0.024 0.976 45 H 0.075 0.925 46 H 0.162 0.838 47 H 0.113 0.887 48 H 0.145 0.855 49 H 0.140 0.860 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 17.594 24.349 -7.574 30.981 hybrid contribution -1.062 -0.975 0.218 1.458 sum 16.532 23.374 -7.356 29.560 Atomic orbital electron populations 1.22469 0.94251 1.03468 1.03571 1.22412 0.94409 0.92872 0.81503 1.21861 1.02484 0.90326 1.04330 1.22476 1.01668 1.02058 0.97559 1.86319 1.71153 1.22626 1.47132 1.18138 0.78449 0.81056 0.81734 1.90935 1.41674 1.71004 1.44390 1.46277 1.56568 1.08741 1.18753 1.21086 0.96095 0.77960 1.02015 1.22059 1.00272 0.91512 1.04709 1.20955 0.80690 0.91685 0.76695 1.90668 1.49391 1.56821 1.49848 1.46172 1.22561 1.09054 1.59029 1.21231 0.97745 0.80124 0.99283 1.19135 0.91027 0.96434 0.94901 1.21471 1.05772 0.93029 1.38277 0.92296 1.25886 0.95881 1.02744 0.94769 1.70057 1.11636 1.35601 1.39293 0.85435 0.77366 0.79293 0.78896 1.19610 1.20543 1.19146 1.22019 0.99657 1.00144 0.82564 1.23479 1.00470 0.97910 0.99581 1.23597 0.97829 1.02678 0.98433 0.91813 0.89293 0.92356 0.90994 0.88189 0.91023 0.92400 0.89234 0.91812 0.91081 0.87728 0.86107 0.88311 0.75394 0.93829 0.93144 0.97129 0.97564 0.92529 0.83763 0.88690 0.85512 0.86001 0.88918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.17 8.37 71.98 0.60 -2.57 16 2 C 0.12 2.07 1.13 -10.80 -0.01 2.06 16 3 C -0.13 -1.28 8.85 71.98 0.64 -0.65 16 4 C -0.18 -3.13 8.37 71.98 0.60 -2.52 16 5 O -0.36 -7.32 8.90 -55.47 -0.49 -7.81 16 6 C 0.65 16.09 7.69 129.79 1.00 17.09 16 7 O -0.59 -18.02 11.51 19.78 0.23 -17.79 16 8 N -0.57 -11.94 2.80 -928.05 -2.60 -14.54 16 9 C 0.15 3.64 4.20 86.38 0.36 4.00 16 10 C -0.14 -3.48 5.98 29.85 0.18 -3.30 16 11 C 0.51 16.98 7.83 87.66 0.69 17.66 16 12 O -0.59 -23.75 15.98 -3.03 -0.05 -23.80 16 13 N -0.72 -24.99 5.56 -463.06 -2.57 -27.56 16 14 C 0.14 6.08 5.61 86.38 0.48 6.56 16 15 C 0.02 1.14 5.09 29.85 0.15 1.30 16 16 C -0.55 -30.81 9.11 25.60 0.23 -30.58 16 17 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 18 C 0.01 0.34 5.46 84.65 0.46 0.80 16 19 N -0.93 -54.60 13.29 21.45 0.28 -54.31 16 20 Si 0.97 43.90 29.54 68.60 2.03 45.93 16 21 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 22 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 23 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 24 C 0.06 0.88 6.16 44.99 0.28 1.16 16 25 C -0.18 -2.17 9.74 30.62 0.30 -1.87 16 26 C -0.19 -2.28 10.19 30.62 0.31 -1.97 16 27 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 29 H 0.06 1.42 5.88 -2.39 -0.01 1.40 16 30 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.06 1.40 5.88 -2.39 -0.01 1.38 16 34 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.07 2.12 7.45 -2.39 -0.02 2.10 16 37 H 0.10 2.34 5.95 -2.39 -0.01 2.33 16 38 H 0.12 2.26 5.89 -2.39 -0.01 2.25 16 39 H 0.10 2.43 8.14 -2.38 -0.02 2.41 16 40 H 0.41 12.27 8.47 -92.71 -0.79 11.48 16 41 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 43 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.01 0.32 8.14 -2.38 -0.02 0.30 16 45 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 46 H 0.14 1.81 7.71 -2.39 -0.02 1.79 16 47 H 0.09 1.42 6.11 -2.39 -0.01 1.40 16 48 H 0.13 1.05 8.14 -2.38 -0.02 1.03 16 49 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 50 H 0.09 1.29 6.11 -2.39 -0.01 1.28 16 Total: -1.00 -71.71 402.20 3.25 -68.47 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: 0.15 Total: 24.26 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: 6.28 Total: 7.17 kcal Atomic # 7 Polarization: -91.53 SS G_CDS: -4.89 Total: -96.41 kcal Atomic # 8 Polarization: -49.09 SS G_CDS: -0.31 Total: -49.40 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -71.71 3.25 -68.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496588616.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.187 kcal (2) G-P(sol) polarization free energy of solvation -71.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds