Wall clock time and date at job start Tue Mar 31 2020 14:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46827 * 2 1 4 4 C 1.52996 * 109.47211 * 240.00132 * 2 1 3 5 5 O 1.45195 * 109.46974 * 119.99725 * 2 1 3 6 6 C 1.34641 * 116.99884 * 60.00093 * 5 2 1 7 7 O 1.21509 * 120.00042 * 0.02562 * 6 5 2 8 8 N 1.34773 * 120.00100 * 179.97438 * 6 5 2 9 9 C 1.46502 * 120.00399 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.47487 * 185.05882 * 9 8 6 11 11 C 1.52996 * 115.55481 * 65.53088 * 10 9 8 12 12 N 1.46901 * 109.46979 * 39.51194 * 11 10 9 13 13 C 1.47965 * 110.99867 * 195.10924 * 12 11 10 14 14 C 1.53933 * 86.17790 * 222.41633 * 13 12 11 15 15 O 1.42903 * 113.73498 * 269.25950 * 14 13 12 16 16 C 1.50695 * 113.73330 * 138.07931 * 14 13 12 17 17 H 1.08002 * 120.00175 * 4.82835 * 16 14 13 18 18 C 1.37886 * 120.00043 * 184.82901 * 16 14 13 19 19 N 1.31511 * 119.99809 * 13.40503 * 18 16 14 20 20 Si 1.86796 * 119.99751 * 193.40927 * 18 16 14 21 21 H 1.48506 * 109.46993 * 179.97438 * 20 18 16 22 22 H 1.48503 * 109.46886 * 299.99494 * 20 18 16 23 23 H 1.48490 * 109.47537 * 59.99885 * 20 18 16 24 24 C 1.47960 * 111.00009 * 95.74758 * 12 11 10 25 25 C 1.53002 * 117.51618 * 211.24346 * 10 9 8 26 26 C 1.52995 * 60.00471 * 107.47312 * 25 10 9 27 27 H 1.08996 * 109.47232 * 300.00276 * 1 2 3 28 28 H 1.08999 * 109.47190 * 60.00024 * 1 2 3 29 29 H 1.08998 * 109.47382 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46583 * 179.97438 * 3 2 1 31 31 H 1.08992 * 109.47123 * 299.99567 * 3 2 1 32 32 H 1.08991 * 109.47299 * 60.00332 * 3 2 1 33 33 H 1.09011 * 109.46954 * 299.99904 * 4 2 1 34 34 H 1.08999 * 109.47171 * 59.99832 * 4 2 1 35 35 H 1.08999 * 109.47514 * 180.02562 * 4 2 1 36 36 H 0.97008 * 120.00074 * 359.97438 * 8 6 5 37 37 H 1.08997 * 109.47253 * 65.05049 * 9 8 6 38 38 H 1.09008 * 109.46410 * 305.05180 * 9 8 6 39 39 H 1.09002 * 109.47473 * 279.50850 * 11 10 9 40 40 H 1.08999 * 109.46909 * 159.50963 * 11 10 9 41 41 H 1.09004 * 113.75692 * 108.09724 * 13 12 11 42 42 H 1.09000 * 113.75987 * 336.73438 * 13 12 11 43 43 H 0.96700 * 114.00729 * 172.08111 * 15 14 13 44 44 H 0.97004 * 120.00178 * 5.68573 * 19 18 16 45 45 H 1.09000 * 113.75900 * 23.26540 * 24 12 11 46 46 H 1.08999 * 113.75864 * 251.90110 * 24 12 11 47 47 H 1.09005 * 117.49566 * 214.96532 * 25 10 9 48 48 H 1.08995 * 117.50035 * 359.97438 * 25 10 9 49 49 H 1.08999 * 117.50015 * 252.51341 * 26 25 10 50 50 H 1.09005 * 117.49900 * 107.48439 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9723 1.3384 7 8 0.9516 -2.5097 0.5036 8 7 2.0679 -2.6656 2.4167 9 6 1.6748 -4.0671 2.5827 10 6 2.1685 -4.5783 3.9376 11 6 1.5310 -3.9208 5.1632 12 7 0.0988 -3.7080 4.9154 13 6 -0.4758 -2.7665 5.9017 14 6 -1.6774 -3.7267 5.9642 15 8 -2.7128 -3.4140 5.0303 16 6 -2.1959 -3.9592 7.3599 17 1 -1.7772 -3.4098 8.1901 18 6 -3.2050 -4.8735 7.5771 19 7 -3.5342 -5.7263 6.6317 20 14 -4.1043 -4.9005 9.2141 21 1 -5.1370 -5.9675 9.1940 22 1 -3.1353 -5.1694 10.3068 23 1 -4.7559 -3.5860 9.4427 24 6 -0.7065 -4.8163 5.4745 25 6 2.5381 -6.0593 4.0423 26 6 3.6370 -4.9948 4.0429 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6767 -1.7490 -1.2492 34 1 1.6767 -0.2074 -2.1392 35 1 3.1300 -0.7216 -1.2490 36 1 2.6282 -2.2370 3.0826 37 1 2.1164 -4.6653 1.7857 38 1 0.5886 -4.1474 2.5380 39 1 2.0133 -2.9620 5.3533 40 1 1.6573 -4.5693 6.0302 41 1 -0.7167 -1.7880 5.4861 42 1 0.0881 -2.7074 6.8326 43 1 -3.4121 -4.0800 4.9806 44 1 -3.0145 -5.7681 5.8137 45 1 -0.2101 -5.3567 6.2805 46 1 -1.1316 -5.4755 4.7176 47 1 2.3270 -6.5653 4.9845 48 1 2.4292 -6.6698 3.1460 49 1 4.2512 -4.9049 3.1469 50 1 4.1489 -4.8004 4.9855 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496671309.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:40 Heat of formation + Delta-G solvation = -74.031226 kcal Electronic energy + Delta-G solvation = -29454.709158 eV Core-core repulsion = 25484.074283 eV Total energy + Delta-G solvation = -3970.634875 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.66040 -39.58300 -38.10580 -36.88614 -34.47834 -34.36011 -33.55703 -32.21321 -29.11564 -27.52216 -27.41533 -26.95753 -25.61393 -25.09286 -22.67841 -22.47225 -21.99990 -20.06508 -19.16402 -18.86110 -18.04987 -17.66277 -16.55224 -16.15714 -15.63845 -15.38887 -14.99513 -14.77518 -14.66889 -14.35597 -14.24640 -13.95598 -13.73962 -13.41303 -13.09902 -12.91770 -12.65867 -12.59472 -12.22067 -12.05570 -11.98090 -11.92436 -11.73115 -11.55867 -11.41854 -11.33153 -11.28934 -10.96489 -10.87862 -10.75314 -10.37516 -10.35130 -10.19032 -10.11458 -9.99162 -9.71447 -9.14388 -8.94371 -8.69667 -8.37788 -7.79345 -6.56216 -4.34489 2.26264 3.03454 3.33575 3.38083 3.55872 3.68502 4.29701 4.36295 4.46942 4.64111 4.67396 4.68452 4.82806 4.90085 4.92056 5.02773 5.08048 5.34006 5.43469 5.48802 5.56592 5.58107 5.59451 5.64836 5.67047 5.73885 5.77335 5.80283 5.86412 5.87770 6.01354 6.06160 6.07994 6.12062 6.18974 6.25002 6.26784 6.31595 6.49103 6.52804 6.63909 6.73427 7.02948 7.08703 7.59488 7.79944 7.85358 8.19153 8.55143 8.58039 9.06465 9.36145 10.75352 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.014328 B = 0.003228 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.765793 B = 8670.929011 C = 9890.604193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.137 3.863 3 C -0.140 4.140 4 C -0.182 4.182 5 O -0.369 6.369 6 C 0.651 3.349 7 O -0.570 6.570 8 N -0.696 5.696 9 C 0.189 3.811 10 C -0.127 4.127 11 C 0.055 3.945 12 N -0.469 5.469 13 C 0.020 3.980 14 C 0.223 3.777 15 O -0.565 6.565 16 C -0.620 4.620 17 H 0.057 0.943 18 C 0.035 3.965 19 N -0.900 5.900 20 Si 1.064 2.936 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.285 1.285 24 C -0.018 4.018 25 C -0.159 4.159 26 C -0.175 4.175 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.090 0.910 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.088 0.912 34 H 0.068 0.932 35 H 0.057 0.943 36 H 0.402 0.598 37 H 0.057 0.943 38 H 0.094 0.906 39 H 0.065 0.935 40 H 0.046 0.954 41 H 0.074 0.926 42 H 0.066 0.934 43 H 0.371 0.629 44 H 0.271 0.729 45 H 0.063 0.937 46 H 0.068 0.932 47 H 0.098 0.902 48 H 0.096 0.904 49 H 0.094 0.906 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.719 6.825 -9.861 18.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.100 3.900 3 C -0.197 4.197 4 C -0.239 4.239 5 O -0.284 6.284 6 C 0.404 3.596 7 O -0.460 6.460 8 N -0.354 5.354 9 C 0.067 3.933 10 C -0.128 4.128 11 C -0.074 4.074 12 N -0.191 5.191 13 C -0.108 4.108 14 C 0.182 3.818 15 O -0.371 6.371 16 C -0.658 4.658 17 H 0.076 0.924 18 C -0.170 4.170 19 N -0.537 5.537 20 Si 0.891 3.109 21 H -0.206 1.206 22 H -0.214 1.214 23 H -0.211 1.211 24 C -0.148 4.148 25 C -0.196 4.196 26 C -0.213 4.213 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.109 0.891 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.107 0.893 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.236 0.764 37 H 0.075 0.925 38 H 0.112 0.888 39 H 0.084 0.916 40 H 0.064 0.936 41 H 0.093 0.907 42 H 0.084 0.916 43 H 0.219 0.781 44 H 0.083 0.917 45 H 0.082 0.918 46 H 0.087 0.913 47 H 0.116 0.884 48 H 0.114 0.886 49 H 0.113 0.887 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 13.466 6.581 -10.330 18.203 hybrid contribution 1.464 0.186 0.512 1.562 sum 14.929 6.767 -9.818 19.107 Atomic orbital electron populations 1.22516 0.93855 1.05407 1.02367 1.22003 0.94514 0.91325 0.82137 1.21850 1.01973 0.92820 1.03073 1.22510 1.01230 1.03675 0.96526 1.86278 1.71717 1.24000 1.46370 1.18014 0.78840 0.80272 0.82508 1.90887 1.40997 1.70450 1.43632 1.44539 1.54881 1.12801 1.23144 1.20645 1.01922 0.77914 0.92844 1.21611 0.96829 0.98073 0.96273 1.22155 0.92492 0.99094 0.93681 1.68448 1.00556 1.07250 1.42858 1.23962 0.95631 0.97729 0.93496 1.20014 0.84504 0.89386 0.87919 1.86242 1.36524 1.50734 1.63631 1.22352 1.24480 1.26360 0.92641 0.92444 1.25899 0.95238 0.91684 1.04222 1.70890 1.40886 1.33615 1.08330 0.83636 0.76469 0.76542 0.74253 1.20583 1.21358 1.21137 1.24894 0.97185 0.95594 0.97097 1.23016 1.02223 0.90806 1.03597 1.23055 0.91006 1.04092 1.03142 0.92027 0.91403 0.89137 0.91684 0.90298 0.91446 0.89311 0.91336 0.92436 0.76409 0.92477 0.88805 0.91641 0.93575 0.90729 0.91631 0.78078 0.91738 0.91846 0.91338 0.88369 0.88595 0.88708 0.88728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.31 8.37 37.16 0.31 -2.00 16 2 C 0.14 1.62 1.13 -90.62 -0.10 1.51 16 3 C -0.14 -1.22 8.85 37.16 0.33 -0.89 16 4 C -0.18 -2.00 8.37 37.16 0.31 -1.69 16 5 O -0.37 -5.17 9.94 -40.33 -0.40 -5.57 16 6 C 0.65 10.16 8.06 54.05 0.44 10.59 16 7 O -0.57 -10.19 11.88 -19.28 -0.23 -10.42 16 8 N -0.70 -9.68 5.48 -65.28 -0.36 -10.04 16 9 C 0.19 2.73 5.17 -4.04 -0.02 2.71 16 10 C -0.13 -1.66 1.96 -154.50 -0.30 -1.96 16 11 C 0.05 0.84 4.89 -3.83 -0.02 0.83 16 12 N -0.47 -9.05 5.07 -238.25 -1.21 -10.26 16 13 C 0.02 0.43 7.30 -2.76 -0.02 0.41 16 14 C 0.22 5.49 1.08 -90.84 -0.10 5.39 16 15 O -0.56 -14.81 13.46 -35.23 -0.47 -15.29 16 16 C -0.62 -16.62 8.57 -34.44 -0.29 -16.91 16 17 H 0.06 1.53 7.85 -52.49 -0.41 1.12 16 18 C 0.04 0.95 5.26 -17.82 -0.09 0.85 16 19 N -0.90 -25.03 12.80 55.43 0.71 -24.32 16 20 Si 1.06 23.85 29.92 -169.99 -5.09 18.77 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 24 C -0.02 -0.40 6.43 -2.76 -0.02 -0.42 16 25 C -0.16 -1.87 9.86 -26.73 -0.26 -2.14 16 26 C -0.18 -1.82 9.97 -26.73 -0.27 -2.08 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.09 1.40 5.88 -51.93 -0.31 1.09 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.09 1.20 5.88 -51.92 -0.31 0.89 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.40 4.89 8.59 -40.82 -0.35 4.54 16 37 H 0.06 0.78 8.09 -51.93 -0.42 0.36 16 38 H 0.09 1.70 7.47 -51.92 -0.39 1.31 16 39 H 0.07 0.93 8.01 -51.93 -0.42 0.52 16 40 H 0.05 0.73 7.08 -51.93 -0.37 0.36 16 41 H 0.07 1.61 8.14 -51.93 -0.42 1.18 16 42 H 0.07 1.32 7.87 -51.93 -0.41 0.91 16 43 H 0.37 9.65 6.91 45.56 0.31 9.97 16 44 H 0.27 7.40 5.50 -40.82 -0.22 7.18 16 45 H 0.06 1.41 7.37 -51.93 -0.38 1.03 16 46 H 0.07 1.56 7.80 -51.93 -0.41 1.15 16 47 H 0.10 1.19 8.08 -51.93 -0.42 0.77 16 48 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 49 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 50 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 397.09 15.07 5.98 5.98 Total: -1.00 -30.01 397.09 -9.11 -39.13 By element: Atomic # 1 Polarization: 25.75 SS G_CDS: -7.94 Total: 17.81 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: -0.11 Total: -5.80 kcal Atomic # 7 Polarization: -43.76 SS G_CDS: -0.86 Total: -44.61 kcal Atomic # 8 Polarization: -30.17 SS G_CDS: -1.10 Total: -31.28 kcal Atomic # 14 Polarization: 23.85 SS G_CDS: -5.09 Total: 18.77 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -30.01 -9.11 -39.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496671309.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.904 kcal (2) G-P(sol) polarization free energy of solvation -30.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds