Wall clock time and date at job start Tue Mar 31 2020 14:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46827 * 2 1 4 4 C 1.52996 * 109.47211 * 240.00132 * 2 1 3 5 5 O 1.45195 * 109.46974 * 119.99725 * 2 1 3 6 6 C 1.34641 * 116.99884 * 60.00093 * 5 2 1 7 7 O 1.21509 * 120.00042 * 0.02562 * 6 5 2 8 8 N 1.34773 * 120.00100 * 179.97438 * 6 5 2 9 9 C 1.46502 * 120.00399 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.47487 * 185.05882 * 9 8 6 11 11 C 1.52996 * 115.55481 * 65.53088 * 10 9 8 12 12 N 1.46901 * 109.46979 * 39.51194 * 11 10 9 13 13 C 1.47965 * 110.99867 * 195.10924 * 12 11 10 14 14 C 1.53933 * 86.17790 * 222.41633 * 13 12 11 15 15 O 1.42903 * 113.73498 * 269.25950 * 14 13 12 16 16 C 1.50695 * 113.73330 * 138.07931 * 14 13 12 17 17 H 1.08002 * 120.00175 * 4.82835 * 16 14 13 18 18 C 1.37886 * 120.00043 * 184.82901 * 16 14 13 19 19 N 1.31511 * 119.99809 * 13.40503 * 18 16 14 20 20 Si 1.86796 * 119.99751 * 193.40927 * 18 16 14 21 21 H 1.48506 * 109.46993 * 179.97438 * 20 18 16 22 22 H 1.48503 * 109.46886 * 299.99494 * 20 18 16 23 23 H 1.48490 * 109.47537 * 59.99885 * 20 18 16 24 24 C 1.47960 * 111.00009 * 95.74758 * 12 11 10 25 25 C 1.53002 * 117.51618 * 211.24346 * 10 9 8 26 26 C 1.52995 * 60.00471 * 107.47312 * 25 10 9 27 27 H 1.08996 * 109.47232 * 300.00276 * 1 2 3 28 28 H 1.08999 * 109.47190 * 60.00024 * 1 2 3 29 29 H 1.08998 * 109.47382 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46583 * 179.97438 * 3 2 1 31 31 H 1.08992 * 109.47123 * 299.99567 * 3 2 1 32 32 H 1.08991 * 109.47299 * 60.00332 * 3 2 1 33 33 H 1.09011 * 109.46954 * 299.99904 * 4 2 1 34 34 H 1.08999 * 109.47171 * 59.99832 * 4 2 1 35 35 H 1.08999 * 109.47514 * 180.02562 * 4 2 1 36 36 H 0.97008 * 120.00074 * 359.97438 * 8 6 5 37 37 H 1.08997 * 109.47253 * 65.05049 * 9 8 6 38 38 H 1.09008 * 109.46410 * 305.05180 * 9 8 6 39 39 H 1.09002 * 109.47473 * 279.50850 * 11 10 9 40 40 H 1.08999 * 109.46909 * 159.50963 * 11 10 9 41 41 H 1.09004 * 113.75692 * 108.09724 * 13 12 11 42 42 H 1.09000 * 113.75987 * 336.73438 * 13 12 11 43 43 H 0.96700 * 114.00729 * 172.08111 * 15 14 13 44 44 H 0.97004 * 120.00178 * 5.68573 * 19 18 16 45 45 H 1.09000 * 113.75900 * 23.26540 * 24 12 11 46 46 H 1.08999 * 113.75864 * 251.90110 * 24 12 11 47 47 H 1.09005 * 117.49566 * 214.96532 * 25 10 9 48 48 H 1.08995 * 117.50035 * 359.97438 * 25 10 9 49 49 H 1.08999 * 117.50015 * 252.51341 * 26 25 10 50 50 H 1.09005 * 117.49900 * 107.48439 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9723 1.3384 7 8 0.9516 -2.5097 0.5036 8 7 2.0679 -2.6656 2.4167 9 6 1.6748 -4.0671 2.5827 10 6 2.1685 -4.5783 3.9376 11 6 1.5310 -3.9208 5.1632 12 7 0.0988 -3.7080 4.9154 13 6 -0.4758 -2.7665 5.9017 14 6 -1.6774 -3.7267 5.9642 15 8 -2.7128 -3.4140 5.0303 16 6 -2.1959 -3.9592 7.3599 17 1 -1.7772 -3.4098 8.1901 18 6 -3.2050 -4.8735 7.5771 19 7 -3.5342 -5.7263 6.6317 20 14 -4.1043 -4.9005 9.2141 21 1 -5.1370 -5.9675 9.1940 22 1 -3.1353 -5.1694 10.3068 23 1 -4.7559 -3.5860 9.4427 24 6 -0.7065 -4.8163 5.4745 25 6 2.5381 -6.0593 4.0423 26 6 3.6370 -4.9948 4.0429 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6767 -1.7490 -1.2492 34 1 1.6767 -0.2074 -2.1392 35 1 3.1300 -0.7216 -1.2490 36 1 2.6282 -2.2370 3.0826 37 1 2.1164 -4.6653 1.7857 38 1 0.5886 -4.1474 2.5380 39 1 2.0133 -2.9620 5.3533 40 1 1.6573 -4.5693 6.0302 41 1 -0.7167 -1.7880 5.4861 42 1 0.0881 -2.7074 6.8326 43 1 -3.4121 -4.0800 4.9806 44 1 -3.0145 -5.7681 5.8137 45 1 -0.2101 -5.3567 6.2805 46 1 -1.1316 -5.4755 4.7176 47 1 2.3270 -6.5653 4.9845 48 1 2.4292 -6.6698 3.1460 49 1 4.2512 -4.9049 3.1469 50 1 4.1489 -4.8004 4.9855 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496671309.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:39 Heat of formation + Delta-G solvation = -96.308764 kcal Electronic energy + Delta-G solvation = -29455.675184 eV Core-core repulsion = 25484.074283 eV Total energy + Delta-G solvation = -3971.600901 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.79961 -41.14313 -39.35878 -37.99794 -36.33216 -35.51937 -34.56558 -34.28652 -30.63576 -28.36440 -28.30169 -28.17284 -27.40664 -26.87561 -24.22734 -23.54231 -23.02686 -21.19407 -20.72193 -20.37396 -19.71339 -18.98516 -17.63178 -17.33542 -17.13483 -16.75307 -16.61288 -16.16562 -15.93360 -15.75987 -15.52150 -15.34782 -15.06847 -14.66436 -14.41599 -14.32419 -13.98286 -13.79624 -13.38079 -13.31547 -13.16052 -13.06162 -12.89886 -12.85075 -12.72122 -12.55930 -12.47433 -12.39558 -12.31981 -12.16590 -12.09617 -11.95388 -11.37799 -11.23593 -11.15935 -11.05202 -10.81327 -10.70456 -10.20763 -10.07766 -9.57848 -8.67457 -6.47479 1.19576 1.53817 1.59244 1.80332 1.82992 2.51622 2.69268 2.91928 3.02890 3.29058 3.58708 3.69427 3.76492 3.76732 3.80940 3.95316 3.95805 3.96297 4.11493 4.24029 4.33922 4.47918 4.55252 4.61143 4.62984 4.66425 4.73763 4.75986 4.76222 4.80545 4.85151 4.88375 4.89189 4.96136 5.00479 5.04005 5.09668 5.22427 5.23216 5.28023 5.29092 5.39801 5.42070 5.60948 5.80882 6.06174 6.21285 6.45637 6.47301 7.00608 7.30125 7.39832 8.63876 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.014328 B = 0.003228 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.765793 B = 8670.929011 C = 9890.604193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.124 3.876 3 C -0.134 4.134 4 C -0.177 4.177 5 O -0.370 6.370 6 C 0.645 3.355 7 O -0.599 6.599 8 N -0.687 5.687 9 C 0.198 3.802 10 C -0.143 4.143 11 C 0.056 3.944 12 N -0.465 5.465 13 C 0.029 3.971 14 C 0.194 3.806 15 O -0.577 6.577 16 C -0.637 4.637 17 H 0.053 0.947 18 C -0.008 4.008 19 N -0.919 5.919 20 Si 1.110 2.890 21 H -0.283 1.283 22 H -0.269 1.269 23 H -0.277 1.277 24 C -0.001 4.001 25 C -0.164 4.164 26 C -0.140 4.140 27 H 0.053 0.947 28 H 0.093 0.907 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.103 0.897 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.091 0.909 35 H 0.067 0.933 36 H 0.412 0.588 37 H 0.065 0.935 38 H 0.051 0.949 39 H 0.082 0.918 40 H 0.046 0.954 41 H 0.069 0.931 42 H 0.079 0.921 43 H 0.366 0.634 44 H 0.263 0.737 45 H 0.060 0.940 46 H 0.053 0.947 47 H 0.094 0.906 48 H 0.102 0.898 49 H 0.111 0.889 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.991 7.866 -9.592 21.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.088 3.912 3 C -0.191 4.191 4 C -0.234 4.234 5 O -0.285 6.285 6 C 0.398 3.602 7 O -0.490 6.490 8 N -0.346 5.346 9 C 0.076 3.924 10 C -0.144 4.144 11 C -0.073 4.073 12 N -0.187 5.187 13 C -0.100 4.100 14 C 0.154 3.846 15 O -0.383 6.383 16 C -0.675 4.675 17 H 0.072 0.928 18 C -0.209 4.209 19 N -0.557 5.557 20 Si 0.932 3.068 21 H -0.208 1.208 22 H -0.194 1.194 23 H -0.202 1.202 24 C -0.131 4.131 25 C -0.202 4.202 26 C -0.178 4.178 27 H 0.072 0.928 28 H 0.112 0.888 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.122 0.878 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.110 0.890 35 H 0.086 0.914 36 H 0.248 0.752 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.101 0.899 40 H 0.065 0.935 41 H 0.088 0.912 42 H 0.097 0.903 43 H 0.214 0.786 44 H 0.074 0.926 45 H 0.078 0.922 46 H 0.071 0.929 47 H 0.112 0.888 48 H 0.120 0.880 49 H 0.129 0.871 50 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 15.781 7.647 -10.056 20.215 hybrid contribution 0.765 -0.101 0.369 0.856 sum 16.546 7.546 -9.687 20.605 Atomic orbital electron populations 1.22483 0.94840 1.03324 1.03268 1.22402 0.93998 0.93007 0.81774 1.21873 1.02599 0.90388 1.04205 1.22447 1.01766 1.02046 0.97111 1.86293 1.71601 1.23057 1.47559 1.18245 0.78615 0.80792 0.82545 1.90882 1.42212 1.71172 1.44730 1.44498 1.54555 1.12614 1.22905 1.20433 0.99425 0.78435 0.94125 1.21414 0.99559 0.99156 0.94257 1.22208 0.89848 1.00341 0.94889 1.68390 1.03051 1.05314 1.41975 1.23883 0.94400 0.97169 0.94548 1.20394 0.85043 0.92047 0.87092 1.86229 1.37009 1.50917 1.64162 1.22636 1.25055 1.26230 0.93568 0.92823 1.27158 0.95984 0.91131 1.06585 1.70975 1.41380 1.34675 1.08664 0.83029 0.75794 0.76717 0.71295 1.20840 1.19416 1.20241 1.24550 0.96971 0.95221 0.96356 1.23102 1.03076 0.90236 1.03781 1.23138 0.89194 1.00765 1.04683 0.92787 0.88837 0.92599 0.90685 0.87838 0.91648 0.92285 0.89018 0.91446 0.75215 0.91655 0.93010 0.89942 0.93541 0.91205 0.90322 0.78594 0.92574 0.92212 0.92894 0.88756 0.87975 0.87051 0.87123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.54 8.37 71.98 0.60 -3.94 16 2 C 0.12 2.80 1.13 -10.79 -0.01 2.79 16 3 C -0.13 -2.00 8.85 71.98 0.64 -1.36 16 4 C -0.18 -3.67 8.37 71.98 0.60 -3.06 16 5 O -0.37 -10.17 9.94 -55.51 -0.55 -10.72 16 6 C 0.64 20.27 8.06 129.79 1.05 21.32 16 7 O -0.60 -22.20 11.88 19.81 0.24 -21.96 16 8 N -0.69 -18.74 5.48 -590.85 -3.24 -21.98 16 9 C 0.20 5.70 5.17 86.38 0.45 6.14 16 10 C -0.14 -3.53 1.96 -52.18 -0.10 -3.63 16 11 C 0.06 1.64 4.89 86.30 0.42 2.06 16 12 N -0.47 -18.03 5.07 -910.91 -4.62 -22.65 16 13 C 0.03 1.22 7.30 86.40 0.63 1.85 16 14 C 0.19 9.78 1.08 -10.89 -0.01 9.77 16 15 O -0.58 -31.32 13.46 -148.98 -2.00 -33.33 16 16 C -0.64 -34.45 8.57 25.60 0.22 -34.23 16 17 H 0.05 2.87 7.85 -2.91 -0.02 2.84 16 18 C -0.01 -0.41 5.26 84.66 0.45 0.03 16 19 N -0.92 -52.07 12.80 21.45 0.27 -51.80 16 20 Si 1.11 47.87 29.92 68.60 2.05 49.92 16 21 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 22 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 23 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 24 C 0.00 -0.06 6.43 86.41 0.56 0.50 16 25 C -0.16 -3.58 9.86 30.59 0.30 -3.28 16 26 C -0.14 -2.45 9.97 30.60 0.31 -2.14 16 27 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.05 1.80 5.88 -2.39 -0.01 1.79 16 30 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 31 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.06 1.61 5.88 -2.38 -0.01 1.60 16 34 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.41 9.38 8.59 -92.70 -0.80 8.59 16 37 H 0.07 1.76 8.09 -2.39 -0.02 1.74 16 38 H 0.05 1.94 7.47 -2.38 -0.02 1.92 16 39 H 0.08 2.15 8.01 -2.39 -0.02 2.13 16 40 H 0.05 1.39 7.08 -2.39 -0.02 1.38 16 41 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 42 H 0.08 3.10 7.87 -2.39 -0.02 3.08 16 43 H 0.37 19.97 6.91 -74.06 -0.51 19.46 16 44 H 0.26 14.89 5.50 -92.71 -0.51 14.38 16 45 H 0.06 2.69 7.37 -2.39 -0.02 2.68 16 46 H 0.05 2.52 7.80 -2.39 -0.02 2.50 16 47 H 0.09 2.15 8.08 -2.38 -0.02 2.13 16 48 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 49 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 50 H 0.11 1.65 8.14 -2.38 -0.02 1.63 16 Total: -1.00 -66.87 397.09 -1.87 -68.74 By element: Atomic # 1 Polarization: 51.07 SS G_CDS: -0.11 Total: 50.96 kcal Atomic # 6 Polarization: -13.27 SS G_CDS: 6.09 Total: -7.19 kcal Atomic # 7 Polarization: -88.85 SS G_CDS: -7.58 Total: -96.43 kcal Atomic # 8 Polarization: -63.69 SS G_CDS: -2.32 Total: -66.01 kcal Atomic # 14 Polarization: 47.87 SS G_CDS: 2.05 Total: 49.92 kcal Total: -66.87 -1.87 -68.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496671309.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.565 kcal (2) G-P(sol) polarization free energy of solvation -66.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds