Wall clock time and date at job start Tue Mar 31 2020 16:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46967 * 2 1 4 4 N 1.46501 * 109.47124 * 180.02562 * 3 2 1 5 5 C 1.37099 * 120.00205 * 264.53954 * 4 3 2 6 6 H 1.07992 * 120.00161 * 145.88772 * 5 4 3 7 7 C 1.38954 * 119.99546 * 325.88983 * 5 4 3 8 8 N 1.31406 * 120.00308 * 337.92179 * 7 5 4 9 9 Si 1.86802 * 119.99679 * 157.92152 * 7 5 4 10 10 H 1.48500 * 109.47151 * 89.99502 * 9 7 5 11 11 H 1.48497 * 109.47263 * 209.99781 * 9 7 5 12 12 H 1.48508 * 109.47028 * 329.99898 * 9 7 5 13 13 C 1.34773 * 119.99783 * 84.54249 * 4 3 2 14 14 O 1.21297 * 120.00192 * 359.97438 * 13 4 3 15 15 C 1.50701 * 120.00026 * 180.02562 * 13 4 3 16 16 H 1.08997 * 112.84954 * 50.32451 * 15 13 4 17 17 C 1.53776 * 113.61735 * 181.52663 * 15 13 4 18 18 C 1.53782 * 87.08515 * 140.06006 * 17 15 13 19 19 H 1.09002 * 113.61245 * 89.19937 * 18 17 15 20 20 N 1.46494 * 113.61898 * 220.02104 * 18 17 15 21 21 C 1.34777 * 120.00012 * 205.00071 * 20 18 17 22 22 O 1.21505 * 120.00081 * 359.97438 * 21 20 18 23 23 O 1.34644 * 119.99857 * 179.97438 * 21 20 18 24 24 C 1.45197 * 116.99919 * 179.97438 * 23 21 20 25 25 C 1.53009 * 109.47033 * 60.00009 * 24 23 21 26 26 C 1.52994 * 109.47223 * 179.97438 * 24 23 21 27 27 C 1.53004 * 109.47201 * 300.00108 * 24 23 21 28 28 C 1.53781 * 87.08116 * 334.56746 * 18 17 15 29 29 H 1.09000 * 109.47258 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47050 * 299.99821 * 1 2 3 31 31 H 1.08996 * 109.47206 * 60.00037 * 1 2 3 32 32 H 1.09004 * 109.47050 * 240.00179 * 2 1 3 33 33 H 1.08996 * 109.47206 * 119.99963 * 2 1 3 34 34 H 1.09006 * 109.47445 * 59.99815 * 3 2 1 35 35 H 1.09004 * 109.47378 * 300.00204 * 3 2 1 36 36 H 0.96998 * 119.99774 * 180.02562 * 8 7 5 37 37 H 1.08999 * 113.61691 * 254.61078 * 17 15 13 38 38 H 1.09007 * 113.61531 * 25.51478 * 17 15 13 39 39 H 0.96998 * 119.99940 * 24.99647 * 20 18 17 40 40 H 1.08996 * 109.46963 * 59.99782 * 25 24 23 41 41 H 1.09003 * 109.47002 * 179.97438 * 25 24 23 42 42 H 1.08996 * 109.46979 * 299.99771 * 25 24 23 43 43 H 1.08999 * 109.47301 * 59.99739 * 26 24 23 44 44 H 1.09003 * 109.47308 * 180.02562 * 26 24 23 45 45 H 1.09000 * 109.47233 * 299.99893 * 26 24 23 46 46 H 1.09001 * 109.46746 * 59.99931 * 27 24 23 47 47 H 1.08996 * 109.46706 * 179.97438 * 27 24 23 48 48 H 1.08999 * 109.46684 * 299.99870 * 27 24 23 49 49 H 1.09003 * 113.61578 * 270.88291 * 28 18 17 50 50 H 1.09005 * 113.61787 * 139.97359 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1910 1.5553 1.1810 6 1 5.1317 1.0409 1.3105 7 6 3.6759 2.3316 2.2120 8 7 2.8051 3.2798 1.9485 9 14 4.2215 2.0274 3.9724 10 1 5.4127 2.8617 4.2728 11 1 3.1194 2.3854 4.9011 12 1 4.5662 0.5930 4.1429 13 6 4.1783 1.3317 -1.1628 14 8 3.5714 1.2315 -2.2082 15 6 5.6854 1.3312 -1.1635 16 1 6.1086 0.6221 -0.4520 17 6 6.3008 1.2349 -2.5694 18 6 7.3489 2.2552 -2.0949 19 1 8.2277 1.7987 -1.6395 20 7 7.6890 3.2602 -3.1051 21 6 8.8852 3.8797 -3.0634 22 8 9.6815 3.6049 -2.1877 23 8 9.1979 4.8030 -3.9921 24 6 10.5033 5.4298 -3.8851 25 6 11.5926 4.3600 -3.9859 26 6 10.6773 6.4424 -5.0187 27 6 10.6158 6.1470 -2.5382 28 6 6.3038 2.7365 -1.0747 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6766 1.9564 -0.8900 36 1 2.4458 3.8219 2.6682 37 1 6.7181 0.2540 -2.7972 38 1 5.6496 1.6124 -3.3579 39 1 7.0532 3.4798 -3.8040 40 1 11.5124 3.8491 -4.9453 41 1 12.5725 4.8306 -3.9060 42 1 11.4688 3.6383 -3.1785 43 1 9.9013 7.2045 -4.9475 44 1 11.6574 6.9127 -4.9386 45 1 10.5973 5.9312 -5.9781 46 1 10.4920 5.4251 -1.7309 47 1 11.5958 6.6171 -2.4578 48 1 9.8398 6.9090 -2.4665 49 1 5.6534 3.5245 -1.4545 50 1 6.7234 2.9677 -0.0956 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496697236.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:49:15 Heat of formation + Delta-G solvation = -107.100758 kcal Electronic energy + Delta-G solvation = -28864.191145 eV Core-core repulsion = 24892.122268 eV Total energy + Delta-G solvation = -3972.068877 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.75244 -39.51792 -37.76905 -36.51008 -34.97508 -34.26709 -33.00006 -32.63480 -31.23630 -27.55239 -27.47877 -26.63144 -25.35921 -25.20136 -24.11254 -22.33022 -20.79814 -20.19838 -19.59868 -18.88433 -17.96022 -17.21323 -16.42576 -16.10675 -16.01446 -15.03853 -14.87795 -14.70871 -14.44668 -14.42183 -14.20621 -13.74997 -13.55344 -13.46234 -12.74558 -12.65364 -12.52833 -12.34224 -12.08029 -12.01441 -11.99760 -11.95298 -11.61374 -11.50851 -11.40499 -11.34465 -11.22307 -10.99822 -10.75870 -10.71854 -10.59018 -10.41131 -10.33917 -10.24674 -10.05922 -9.93661 -9.71547 -9.07083 -8.90020 -8.35969 -7.53218 -6.39355 -4.04840 2.26824 2.94513 3.09953 3.20784 3.24109 3.86420 4.08988 4.22336 4.59726 4.63478 4.72219 4.78170 4.91538 4.95631 5.07401 5.30847 5.33636 5.39579 5.47312 5.51250 5.53915 5.63140 5.74326 5.79028 5.83319 5.84159 5.92749 6.03993 6.11104 6.16811 6.20320 6.26098 6.31403 6.37393 6.45595 6.52511 6.54440 6.57074 6.66930 6.69779 6.82821 6.92212 7.12274 7.36535 7.48919 7.59476 7.91954 8.36459 8.50573 9.06848 9.52484 9.95037 10.62096 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.015795 B = 0.002897 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.275628 B = 9663.952077 C =10726.324556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.134 4.134 3 C 0.114 3.886 4 N -0.433 5.433 5 C -0.336 4.336 6 H 0.090 0.910 7 C 0.044 3.956 8 N -0.857 5.857 9 Si 0.909 3.091 10 H -0.276 1.276 11 H -0.282 1.282 12 H -0.269 1.269 13 C 0.477 3.523 14 O -0.608 6.608 15 C -0.106 4.106 16 H 0.104 0.896 17 C -0.123 4.123 18 C 0.131 3.869 19 H 0.117 0.883 20 N -0.695 5.695 21 C 0.649 3.351 22 O -0.572 6.572 23 O -0.368 6.368 24 C 0.136 3.864 25 C -0.183 4.183 26 C -0.140 4.140 27 C -0.184 4.184 28 C -0.116 4.116 29 H 0.044 0.956 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.107 0.893 35 H 0.050 0.950 36 H 0.269 0.731 37 H 0.071 0.929 38 H 0.097 0.903 39 H 0.406 0.594 40 H 0.058 0.942 41 H 0.068 0.932 42 H 0.089 0.911 43 H 0.066 0.934 44 H 0.078 0.922 45 H 0.065 0.935 46 H 0.089 0.911 47 H 0.068 0.932 48 H 0.060 0.940 49 H 0.084 0.916 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.955 2.580 -8.219 13.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.173 4.173 3 C -0.010 4.010 4 N -0.150 5.150 5 C -0.464 4.464 6 H 0.108 0.892 7 C -0.161 4.161 8 N -0.494 5.494 9 Si 0.735 3.265 10 H -0.202 1.202 11 H -0.208 1.208 12 H -0.193 1.193 13 C 0.266 3.734 14 O -0.495 6.495 15 C -0.128 4.128 16 H 0.122 0.878 17 C -0.162 4.162 18 C 0.028 3.972 19 H 0.135 0.865 20 N -0.352 5.352 21 C 0.402 3.598 22 O -0.461 6.461 23 O -0.283 6.283 24 C 0.099 3.901 25 C -0.240 4.240 26 C -0.198 4.198 27 C -0.241 4.241 28 C -0.155 4.155 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.124 0.876 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.115 0.885 39 H 0.241 0.759 40 H 0.077 0.923 41 H 0.087 0.913 42 H 0.107 0.893 43 H 0.085 0.915 44 H 0.097 0.903 45 H 0.084 0.916 46 H 0.108 0.892 47 H 0.086 0.914 48 H 0.079 0.921 49 H 0.103 0.897 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 10.982 2.608 -8.183 13.941 hybrid contribution -0.034 0.083 0.837 0.842 sum 10.947 2.691 -7.346 13.455 Atomic orbital electron populations 1.21655 0.96642 1.00396 1.01364 1.21832 0.94674 0.99523 1.01253 1.21450 0.81546 0.94447 1.03511 1.43477 1.04713 1.61790 1.05011 1.19384 1.07433 1.29126 0.90481 0.89220 1.25282 0.96999 0.93587 1.00279 1.69937 1.30143 1.16191 1.33110 0.86232 0.78476 0.79147 0.82662 1.20210 1.20758 1.19337 1.20079 0.88652 0.81036 0.83645 1.90506 1.70073 1.56887 1.32000 1.22106 0.94587 0.98996 0.97094 0.87827 1.23265 0.96227 0.98496 0.98206 1.22797 0.97348 0.88274 0.88755 0.86542 1.44916 1.15140 1.41973 1.33203 1.18182 0.83023 0.78353 0.80247 1.90874 1.49708 1.67409 1.38129 1.86303 1.38260 1.52120 1.51621 1.22018 0.79114 0.92252 0.96713 1.22515 0.97822 0.99898 1.03766 1.21854 1.02626 0.97996 0.97280 1.22519 1.02308 1.01607 0.97690 1.23178 0.96271 0.96590 0.99500 0.93667 0.93020 0.93171 0.92893 0.92429 0.87561 0.93181 0.92074 0.91018 0.88482 0.75917 0.92305 0.91343 0.89260 0.91475 0.90302 0.91571 0.89186 0.91353 0.92143 0.89740 0.90256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.91 37.16 0.37 -2.04 16 2 C -0.13 -2.74 6.22 -26.73 -0.17 -2.90 16 3 C 0.11 2.69 4.89 -4.04 -0.02 2.67 16 4 N -0.43 -10.57 2.56 -114.81 -0.29 -10.87 16 5 C -0.34 -8.21 8.64 -14.93 -0.13 -8.34 16 6 H 0.09 2.09 6.78 -52.49 -0.36 1.73 16 7 C 0.04 1.09 4.92 -17.47 -0.09 1.00 16 8 N -0.86 -22.09 11.34 55.50 0.63 -21.46 16 9 Si 0.91 19.08 29.61 -169.99 -5.03 14.04 16 10 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 11 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 12 H -0.27 -5.57 7.11 56.52 0.40 -5.16 16 13 C 0.48 11.14 7.13 -10.99 -0.08 11.06 16 14 O -0.61 -15.43 15.58 5.54 0.09 -15.34 16 15 C -0.11 -2.00 3.00 -90.96 -0.27 -2.27 16 16 H 0.10 1.86 7.29 -51.93 -0.38 1.48 16 17 C -0.12 -1.94 7.14 -25.92 -0.19 -2.13 16 18 C 0.13 1.98 4.24 -67.12 -0.28 1.70 16 19 H 0.12 1.76 7.46 -51.93 -0.39 1.37 16 20 N -0.69 -9.81 5.36 -57.93 -0.31 -10.12 16 21 C 0.65 9.77 8.06 54.06 0.44 10.21 16 22 O -0.57 -9.66 11.48 -19.28 -0.22 -9.88 16 23 O -0.37 -4.96 9.94 -40.33 -0.40 -5.36 16 24 C 0.14 1.51 1.13 -90.62 -0.10 1.41 16 25 C -0.18 -1.92 8.37 37.16 0.31 -1.61 16 26 C -0.14 -1.15 8.85 37.15 0.33 -0.82 16 27 C -0.18 -2.06 8.37 37.16 0.31 -1.75 16 28 C -0.12 -2.07 7.32 -25.91 -0.19 -2.26 16 29 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.11 2.66 5.36 -51.93 -0.28 2.38 16 35 H 0.05 1.24 7.59 -51.93 -0.39 0.84 16 36 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 37 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 38 H 0.10 1.62 7.43 -51.93 -0.39 1.24 16 39 H 0.41 5.08 8.84 -40.82 -0.36 4.72 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.09 1.16 5.88 -51.93 -0.31 0.86 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.09 1.25 5.88 -51.93 -0.31 0.94 16 47 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 49 H 0.08 1.63 8.10 -51.93 -0.42 1.21 16 50 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 LS Contribution 398.29 15.07 6.00 6.00 Total: -1.00 -29.09 398.29 -7.93 -37.02 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: -8.63 Total: 12.03 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: 0.24 Total: 3.93 kcal Atomic # 7 Polarization: -42.47 SS G_CDS: 0.03 Total: -42.45 kcal Atomic # 8 Polarization: -30.05 SS G_CDS: -0.54 Total: -30.58 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.03 Total: 14.04 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -29.09 -7.93 -37.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496697236.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.082 kcal (2) G-P(sol) polarization free energy of solvation -29.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds