Wall clock time and date at job start Tue Mar 31 2020 16:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46967 * 2 1 4 4 N 1.46501 * 109.47124 * 180.02562 * 3 2 1 5 5 C 1.37099 * 120.00205 * 264.53954 * 4 3 2 6 6 H 1.07992 * 120.00161 * 145.88772 * 5 4 3 7 7 C 1.38954 * 119.99546 * 325.88983 * 5 4 3 8 8 N 1.31406 * 120.00308 * 337.92179 * 7 5 4 9 9 Si 1.86802 * 119.99679 * 157.92152 * 7 5 4 10 10 H 1.48500 * 109.47151 * 89.99502 * 9 7 5 11 11 H 1.48497 * 109.47263 * 209.99781 * 9 7 5 12 12 H 1.48508 * 109.47028 * 329.99898 * 9 7 5 13 13 C 1.34773 * 119.99783 * 84.54249 * 4 3 2 14 14 O 1.21297 * 120.00192 * 359.97438 * 13 4 3 15 15 C 1.50701 * 120.00026 * 180.02562 * 13 4 3 16 16 H 1.08997 * 112.84954 * 50.32451 * 15 13 4 17 17 C 1.53776 * 113.61735 * 181.52663 * 15 13 4 18 18 C 1.53782 * 87.08515 * 140.06006 * 17 15 13 19 19 H 1.09002 * 113.61245 * 89.19937 * 18 17 15 20 20 N 1.46494 * 113.61898 * 220.02104 * 18 17 15 21 21 C 1.34777 * 120.00012 * 205.00071 * 20 18 17 22 22 O 1.21505 * 120.00081 * 359.97438 * 21 20 18 23 23 O 1.34644 * 119.99857 * 179.97438 * 21 20 18 24 24 C 1.45197 * 116.99919 * 179.97438 * 23 21 20 25 25 C 1.53009 * 109.47033 * 60.00009 * 24 23 21 26 26 C 1.52994 * 109.47223 * 179.97438 * 24 23 21 27 27 C 1.53004 * 109.47201 * 300.00108 * 24 23 21 28 28 C 1.53781 * 87.08116 * 334.56746 * 18 17 15 29 29 H 1.09000 * 109.47258 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47050 * 299.99821 * 1 2 3 31 31 H 1.08996 * 109.47206 * 60.00037 * 1 2 3 32 32 H 1.09004 * 109.47050 * 240.00179 * 2 1 3 33 33 H 1.08996 * 109.47206 * 119.99963 * 2 1 3 34 34 H 1.09006 * 109.47445 * 59.99815 * 3 2 1 35 35 H 1.09004 * 109.47378 * 300.00204 * 3 2 1 36 36 H 0.96998 * 119.99774 * 180.02562 * 8 7 5 37 37 H 1.08999 * 113.61691 * 254.61078 * 17 15 13 38 38 H 1.09007 * 113.61531 * 25.51478 * 17 15 13 39 39 H 0.96998 * 119.99940 * 24.99647 * 20 18 17 40 40 H 1.08996 * 109.46963 * 59.99782 * 25 24 23 41 41 H 1.09003 * 109.47002 * 179.97438 * 25 24 23 42 42 H 1.08996 * 109.46979 * 299.99771 * 25 24 23 43 43 H 1.08999 * 109.47301 * 59.99739 * 26 24 23 44 44 H 1.09003 * 109.47308 * 180.02562 * 26 24 23 45 45 H 1.09000 * 109.47233 * 299.99893 * 26 24 23 46 46 H 1.09001 * 109.46746 * 59.99931 * 27 24 23 47 47 H 1.08996 * 109.46706 * 179.97438 * 27 24 23 48 48 H 1.08999 * 109.46684 * 299.99870 * 27 24 23 49 49 H 1.09003 * 113.61578 * 270.88291 * 28 18 17 50 50 H 1.09005 * 113.61787 * 139.97359 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1910 1.5553 1.1810 6 1 5.1317 1.0409 1.3105 7 6 3.6759 2.3316 2.2120 8 7 2.8051 3.2798 1.9485 9 14 4.2215 2.0274 3.9724 10 1 5.4127 2.8617 4.2728 11 1 3.1194 2.3854 4.9011 12 1 4.5662 0.5930 4.1429 13 6 4.1783 1.3317 -1.1628 14 8 3.5714 1.2315 -2.2082 15 6 5.6854 1.3312 -1.1635 16 1 6.1086 0.6221 -0.4520 17 6 6.3008 1.2349 -2.5694 18 6 7.3489 2.2552 -2.0949 19 1 8.2277 1.7987 -1.6395 20 7 7.6890 3.2602 -3.1051 21 6 8.8852 3.8797 -3.0634 22 8 9.6815 3.6049 -2.1877 23 8 9.1979 4.8030 -3.9921 24 6 10.5033 5.4298 -3.8851 25 6 11.5926 4.3600 -3.9859 26 6 10.6773 6.4424 -5.0187 27 6 10.6158 6.1470 -2.5382 28 6 6.3038 2.7365 -1.0747 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6766 1.9564 -0.8900 36 1 2.4458 3.8219 2.6682 37 1 6.7181 0.2540 -2.7972 38 1 5.6496 1.6124 -3.3579 39 1 7.0532 3.4798 -3.8040 40 1 11.5124 3.8491 -4.9453 41 1 12.5725 4.8306 -3.9060 42 1 11.4688 3.6383 -3.1785 43 1 9.9013 7.2045 -4.9475 44 1 11.6574 6.9127 -4.9386 45 1 10.5973 5.9312 -5.9781 46 1 10.4920 5.4251 -1.7309 47 1 11.5958 6.6171 -2.4578 48 1 9.8398 6.9090 -2.4665 49 1 5.6534 3.5245 -1.4545 50 1 6.7234 2.9677 -0.0956 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496697236.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:49:14 Heat of formation + Delta-G solvation = -123.701614 kcal Electronic energy + Delta-G solvation = -28864.911013 eV Core-core repulsion = 24892.122268 eV Total energy + Delta-G solvation = -3972.788744 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.90474 -41.05900 -39.25055 -37.75690 -36.81094 -35.32271 -34.53607 -33.97789 -33.07051 -28.33203 -28.27436 -28.22014 -27.12621 -26.60623 -25.68469 -23.56792 -22.36256 -21.40840 -21.07626 -20.46686 -19.16941 -18.72889 -17.96170 -17.46260 -17.15149 -16.55790 -16.46991 -16.29747 -15.87193 -15.60084 -15.38991 -15.24630 -15.14856 -14.54424 -14.27387 -13.97659 -13.66824 -13.46411 -13.32800 -13.28928 -13.15021 -13.07197 -12.88361 -12.87515 -12.83416 -12.62865 -12.44649 -12.41621 -12.33883 -12.15483 -12.09921 -11.98106 -11.88579 -11.55067 -11.42628 -11.35903 -11.06525 -10.93704 -10.29930 -10.06171 -9.44791 -8.27583 -5.98716 1.19793 1.42270 1.49496 1.59539 1.76071 2.05775 2.33441 2.95659 3.08697 3.26385 3.56231 3.65809 3.78580 3.83376 3.97736 3.98149 4.00515 4.18136 4.32490 4.44365 4.52152 4.61977 4.63088 4.64679 4.76484 4.79044 4.79300 4.83183 4.87148 4.88158 4.90702 4.98623 5.00387 5.07830 5.09641 5.12589 5.22129 5.23051 5.31791 5.36989 5.38611 5.49079 5.54433 5.59669 5.61170 6.05111 6.43967 6.46472 7.16720 7.35989 7.65144 8.07781 8.74872 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.015795 B = 0.002897 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.275628 B = 9663.952077 C =10726.324556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.124 4.124 3 C 0.114 3.886 4 N -0.447 5.447 5 C -0.347 4.347 6 H 0.100 0.900 7 C 0.005 3.995 8 N -0.891 5.891 9 Si 0.973 3.027 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.260 1.260 13 C 0.465 3.535 14 O -0.635 6.635 15 C -0.111 4.111 16 H 0.116 0.884 17 C -0.108 4.108 18 C 0.154 3.846 19 H 0.124 0.876 20 N -0.691 5.691 21 C 0.647 3.353 22 O -0.591 6.591 23 O -0.371 6.371 24 C 0.122 3.878 25 C -0.178 4.178 26 C -0.135 4.135 27 C -0.181 4.181 28 C -0.116 4.116 29 H 0.072 0.928 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.041 0.959 33 H 0.055 0.945 34 H 0.092 0.908 35 H 0.027 0.973 36 H 0.270 0.730 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.414 0.586 40 H 0.063 0.937 41 H 0.092 0.908 42 H 0.061 0.939 43 H 0.066 0.934 44 H 0.104 0.896 45 H 0.071 0.929 46 H 0.060 0.940 47 H 0.093 0.907 48 H 0.057 0.943 49 H 0.063 0.937 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.534 2.227 -8.409 15.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.162 4.162 3 C -0.010 4.010 4 N -0.164 5.164 5 C -0.474 4.474 6 H 0.117 0.883 7 C -0.198 4.198 8 N -0.528 5.528 9 Si 0.797 3.203 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.184 1.184 13 C 0.256 3.744 14 O -0.524 6.524 15 C -0.132 4.132 16 H 0.134 0.866 17 C -0.147 4.147 18 C 0.050 3.950 19 H 0.142 0.858 20 N -0.349 5.349 21 C 0.401 3.599 22 O -0.482 6.482 23 O -0.286 6.286 24 C 0.086 3.914 25 C -0.235 4.235 26 C -0.192 4.192 27 C -0.239 4.239 28 C -0.156 4.156 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.110 0.890 35 H 0.045 0.955 36 H 0.080 0.920 37 H 0.115 0.885 38 H 0.105 0.895 39 H 0.250 0.750 40 H 0.082 0.918 41 H 0.110 0.890 42 H 0.080 0.920 43 H 0.085 0.915 44 H 0.122 0.878 45 H 0.090 0.910 46 H 0.079 0.921 47 H 0.112 0.888 48 H 0.076 0.924 49 H 0.082 0.918 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 12.565 2.260 -8.391 15.277 hybrid contribution -0.521 0.271 0.850 1.033 sum 12.044 2.530 -7.541 14.433 Atomic orbital electron populations 1.21612 0.93784 1.02318 1.01650 1.21716 0.97160 0.96899 1.00472 1.21410 0.81794 0.96227 1.01541 1.43753 1.05072 1.61937 1.05604 1.19690 1.07896 1.29217 0.90605 0.88275 1.26060 0.97015 0.93066 1.03670 1.70040 1.31483 1.17139 1.34173 0.85237 0.77838 0.79268 0.77908 1.20027 1.20852 1.18417 1.20849 0.90581 0.80072 0.82945 1.90472 1.71210 1.57924 1.32747 1.22186 0.91453 0.99866 0.99728 0.86595 1.23152 0.95631 0.99941 0.95961 1.22483 0.96739 0.87822 0.87953 0.85783 1.44812 1.15289 1.41747 1.33094 1.18278 0.82872 0.78482 0.80256 1.90874 1.50332 1.68045 1.38947 1.86322 1.39793 1.51560 1.50919 1.22446 0.78191 0.92937 0.97812 1.22465 0.98863 0.99326 1.02885 1.21883 1.04053 0.97134 0.96138 1.22486 1.03704 1.00821 0.96846 1.23116 0.96891 0.95547 1.00015 0.90890 0.92631 0.93022 0.94050 0.92595 0.88986 0.95451 0.92021 0.88497 0.89467 0.75000 0.91784 0.88954 0.91966 0.91528 0.87768 0.91037 0.92119 0.88836 0.92424 0.91823 0.91050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.45 9.91 71.98 0.71 -3.73 16 2 C -0.12 -5.07 6.22 30.59 0.19 -4.88 16 3 C 0.11 5.55 4.89 86.38 0.42 5.97 16 4 N -0.45 -22.30 2.56 -635.53 -1.62 -23.92 16 5 C -0.35 -17.01 8.64 84.04 0.73 -16.28 16 6 H 0.10 4.58 6.78 -2.91 -0.02 4.56 16 7 C 0.00 0.23 4.92 84.93 0.42 0.65 16 8 N -0.89 -46.76 11.34 21.66 0.25 -46.51 16 9 Si 0.97 38.90 29.61 68.60 2.03 40.93 16 10 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 11 H -0.28 -11.28 7.11 99.48 0.71 -10.57 16 12 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 13 C 0.47 22.14 7.13 87.66 0.62 22.77 16 14 O -0.63 -32.99 15.58 -3.08 -0.05 -33.04 16 15 C -0.11 -4.15 3.00 -11.01 -0.03 -4.19 16 16 H 0.12 4.05 7.29 -2.39 -0.02 4.03 16 17 C -0.11 -3.30 7.14 31.12 0.22 -3.08 16 18 C 0.15 4.52 4.24 45.52 0.19 4.71 16 19 H 0.12 3.57 7.46 -2.39 -0.02 3.55 16 20 N -0.69 -19.12 5.36 -567.61 -3.04 -22.16 16 21 C 0.65 19.18 8.06 129.79 1.05 20.23 16 22 O -0.59 -19.85 11.48 19.83 0.23 -19.63 16 23 O -0.37 -9.68 9.94 -55.53 -0.55 -10.23 16 24 C 0.12 2.52 1.13 -10.79 -0.01 2.51 16 25 C -0.18 -3.46 8.37 71.99 0.60 -2.85 16 26 C -0.14 -1.86 8.85 71.98 0.64 -1.22 16 27 C -0.18 -3.87 8.37 71.98 0.60 -3.27 16 28 C -0.12 -4.19 7.32 31.12 0.23 -3.96 16 29 H 0.07 1.98 8.14 -2.39 -0.02 1.97 16 30 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 31 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 33 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.09 4.75 5.36 -2.38 -0.01 4.74 16 35 H 0.03 1.41 7.59 -2.38 -0.02 1.39 16 36 H 0.27 13.42 8.31 -92.71 -0.77 12.65 16 37 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 38 H 0.09 2.87 7.43 -2.38 -0.02 2.86 16 39 H 0.41 10.14 8.84 -92.71 -0.82 9.32 16 40 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.06 1.58 5.88 -2.39 -0.01 1.56 16 43 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.06 1.68 5.88 -2.39 -0.01 1.66 16 47 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 48 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 49 H 0.06 2.55 8.10 -2.39 -0.02 2.53 16 50 H 0.07 2.66 8.14 -2.38 -0.02 2.64 16 Total: -1.00 -63.99 398.29 3.93 -60.06 By element: Atomic # 1 Polarization: 41.03 SS G_CDS: 0.11 Total: 41.14 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: 6.58 Total: 13.37 kcal Atomic # 7 Polarization: -88.18 SS G_CDS: -4.42 Total: -92.60 kcal Atomic # 8 Polarization: -62.53 SS G_CDS: -0.37 Total: -62.90 kcal Atomic # 14 Polarization: 38.90 SS G_CDS: 2.03 Total: 40.93 kcal Total: -63.99 3.93 -60.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496697236.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.643 kcal (2) G-P(sol) polarization free energy of solvation -63.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds