Wall clock time and date at job start Tue Mar 31 2020 14:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.46995 * 2 1 4 4 C 1.52992 * 109.46848 * 239.99891 * 2 1 3 5 5 O 1.45199 * 109.46600 * 119.99893 * 2 1 3 6 6 C 1.34637 * 116.99996 * 60.00292 * 5 2 1 7 7 O 1.21511 * 120.00332 * 359.97438 * 6 5 2 8 8 N 1.34777 * 119.99743 * 179.97438 * 6 5 2 9 9 C 1.46501 * 119.99737 * 184.99883 * 8 6 5 10 10 C 1.50705 * 112.85024 * 66.34562 * 9 8 6 11 11 O 1.21282 * 119.99990 * 205.23543 * 10 9 8 12 12 N 1.34770 * 119.99673 * 25.23641 * 10 9 8 13 13 C 1.46504 * 120.00045 * 175.00410 * 12 10 9 14 14 C 1.52995 * 109.47188 * 179.97438 * 13 12 10 15 15 C 1.53007 * 109.46759 * 179.97438 * 14 13 12 16 16 C 1.50704 * 109.46790 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00246 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99865 * 179.97438 * 16 15 14 19 19 N 1.31510 * 119.99963 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99875 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47170 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47174 * 120.00431 * 20 18 16 23 23 H 1.48501 * 109.47042 * 240.00027 * 20 18 16 24 24 C 1.53788 * 113.61630 * 295.14742 * 9 8 6 25 25 C 1.53782 * 87.08094 * 220.01694 * 24 9 8 26 26 C 1.53778 * 87.17414 * 25.39279 * 25 24 9 27 27 H 1.08999 * 109.47295 * 300.00761 * 1 2 3 28 28 H 1.09010 * 109.46809 * 59.99807 * 1 2 3 29 29 H 1.08998 * 109.47382 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46897 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47309 * 299.99409 * 3 2 1 32 32 H 1.08996 * 109.47361 * 60.00170 * 3 2 1 33 33 H 1.09008 * 109.47397 * 300.00126 * 4 2 1 34 34 H 1.08998 * 109.47560 * 60.00528 * 4 2 1 35 35 H 1.09009 * 109.47295 * 180.02562 * 4 2 1 36 36 H 0.96997 * 120.00072 * 5.00347 * 8 6 5 37 37 H 0.97005 * 120.00446 * 354.99708 * 12 10 9 38 38 H 1.08998 * 109.46874 * 300.00134 * 13 12 10 39 39 H 1.09001 * 109.46685 * 59.99330 * 13 12 10 40 40 H 1.08995 * 109.47216 * 299.99483 * 14 13 12 41 41 H 1.09004 * 109.47024 * 60.00069 * 14 13 12 42 42 H 1.08995 * 109.47049 * 299.99848 * 15 14 13 43 43 H 1.08995 * 109.47282 * 60.00329 * 15 14 13 44 44 H 0.96996 * 119.99916 * 180.02562 * 19 18 16 45 45 H 1.09006 * 113.61040 * 105.47203 * 24 9 8 46 46 H 1.08992 * 113.61384 * 334.57056 * 24 9 8 47 47 H 1.09005 * 113.61425 * 139.97827 * 25 24 9 48 48 H 1.08995 * 113.61739 * 270.79907 * 25 24 9 49 49 H 1.09001 * 113.62025 * 89.14890 * 26 25 24 50 50 H 1.08998 * 113.61803 * 220.06318 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2492 5 8 2.0139 -0.6845 1.1856 6 6 1.6521 -1.9723 1.3383 7 8 0.9508 -2.5095 0.5040 8 7 2.0679 -2.6657 2.4167 9 6 1.7668 -4.0950 2.5292 10 6 2.4706 -4.9251 1.4867 11 8 2.0064 -5.9928 1.1469 12 7 3.6157 -4.4809 0.9321 13 6 4.3578 -5.3343 0.0007 14 6 5.6092 -4.5970 -0.4800 15 6 6.3844 -5.4887 -1.4523 16 6 7.6168 -4.7622 -1.9263 17 1 7.8264 -3.7647 -1.5695 18 6 8.4773 -5.3716 -2.8147 19 7 8.2223 -6.5865 -3.2488 20 14 10.0052 -4.4714 -3.4017 21 1 10.0626 -3.1291 -2.7691 22 1 11.2131 -5.2482 -3.0240 23 1 9.9548 -4.3216 -4.8783 24 6 0.2643 -4.4006 2.6488 25 6 0.6448 -5.4717 3.6846 26 6 1.9133 -4.6468 3.9590 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6766 -1.7490 -1.2492 34 1 1.6767 -0.2074 -2.1392 35 1 3.1300 -0.7217 -1.2490 36 1 2.5663 -2.2183 3.1183 37 1 3.9487 -3.5961 1.1494 38 1 4.6495 -6.2552 0.5055 39 1 3.7261 -5.5734 -0.8548 40 1 5.3170 -3.6764 -0.9850 41 1 6.2409 -4.3576 0.3754 42 1 6.6766 -6.4091 -0.9469 43 1 5.7529 -5.7285 -2.3077 44 1 8.8279 -7.0154 -3.8735 45 1 -0.1718 -4.8099 1.7375 46 1 -0.3168 -3.5777 3.0648 47 1 -0.0370 -5.5195 4.5338 48 1 0.8459 -6.4497 3.2476 49 1 1.7838 -3.8913 4.7339 50 1 2.8065 -5.2545 4.1040 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496703752.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:32 Heat of formation + Delta-G solvation = -113.277301 kcal Electronic energy + Delta-G solvation = -29347.571491 eV Core-core repulsion = 25375.234779 eV Total energy + Delta-G solvation = -3972.336712 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.41349 -40.25811 -37.87808 -36.89636 -35.38124 -34.50236 -33.57330 -33.00750 -31.14801 -27.60832 -27.49242 -27.33755 -26.07659 -25.74056 -23.37600 -22.47976 -21.28687 -20.64874 -20.18797 -19.09391 -18.36737 -17.72534 -16.60736 -16.34094 -16.24347 -15.77626 -15.48307 -15.08316 -14.80404 -14.73878 -14.48293 -14.42703 -13.83136 -13.71678 -13.31734 -12.70349 -12.67141 -12.54728 -12.29358 -12.23288 -12.10111 -12.02877 -11.88207 -11.82568 -11.64866 -11.54270 -11.40384 -11.25191 -10.92440 -10.80260 -10.73408 -10.57763 -10.52696 -10.20677 -10.11742 -9.87615 -9.56492 -9.18405 -9.03671 -8.76795 -8.37769 -6.02055 -4.05070 1.87910 2.62895 2.65739 3.28123 3.29515 3.37088 3.40749 3.86784 4.15358 4.28127 4.43826 4.53447 4.56453 4.58888 4.64332 4.72967 5.06603 5.27427 5.32337 5.33799 5.36616 5.40629 5.45964 5.49661 5.62150 5.63937 5.68978 5.72640 5.73224 5.77313 5.81501 5.87735 5.94423 6.11543 6.15484 6.20863 6.29013 6.34800 6.48248 6.59434 6.82060 6.99546 7.16011 7.63418 7.67663 7.75870 7.96686 8.20495 8.33631 8.38796 9.01626 9.59099 11.09310 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.010268 B = 0.003409 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2726.348393 B = 8210.506828 C =10295.290885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.138 3.862 3 C -0.141 4.141 4 C -0.186 4.186 5 O -0.365 6.365 6 C 0.648 3.352 7 O -0.549 6.549 8 N -0.704 5.704 9 C 0.143 3.857 10 C 0.529 3.471 11 O -0.530 6.530 12 N -0.717 5.717 13 C 0.117 3.883 14 C -0.120 4.120 15 C 0.024 3.976 16 C -0.521 4.521 17 H 0.055 0.945 18 C 0.057 3.943 19 N -0.893 5.893 20 Si 0.892 3.108 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C -0.114 4.114 25 C -0.137 4.137 26 C -0.123 4.123 27 H 0.057 0.943 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.065 0.935 33 H 0.089 0.911 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.408 0.592 37 H 0.396 0.604 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.052 0.948 41 H 0.053 0.947 42 H 0.019 0.981 43 H 0.019 0.981 44 H 0.261 0.739 45 H 0.086 0.914 46 H 0.089 0.911 47 H 0.077 0.923 48 H 0.098 0.902 49 H 0.099 0.901 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.559 13.500 15.277 26.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.101 3.899 3 C -0.198 4.198 4 C -0.243 4.243 5 O -0.280 6.280 6 C 0.401 3.599 7 O -0.436 6.436 8 N -0.366 5.366 9 C 0.055 3.945 10 C 0.312 3.688 11 O -0.406 6.406 12 N -0.367 5.367 13 C -0.006 4.006 14 C -0.158 4.158 15 C -0.013 4.013 16 C -0.560 4.560 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.532 5.532 20 Si 0.720 3.280 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.153 4.153 25 C -0.175 4.175 26 C -0.161 4.161 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.107 0.893 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.107 0.893 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.244 0.756 37 H 0.229 0.771 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.037 0.963 43 H 0.037 0.963 44 H 0.070 0.930 45 H 0.105 0.895 46 H 0.107 0.893 47 H 0.095 0.905 48 H 0.116 0.884 49 H 0.118 0.882 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -17.142 12.366 14.398 25.575 hybrid contribution 1.381 1.215 -0.135 1.844 sum -15.761 13.581 14.263 25.225 Atomic orbital electron populations 1.22515 0.94082 1.05062 1.02340 1.22094 0.94223 0.91481 0.82094 1.21865 1.02526 0.92438 1.02966 1.22536 1.02094 1.03532 0.96176 1.86293 1.71412 1.23538 1.46709 1.18136 0.79034 0.80629 0.82093 1.90963 1.39643 1.70160 1.42814 1.44762 1.60978 1.08702 1.22167 1.22119 0.98375 0.77615 0.96432 1.19881 0.80842 0.86248 0.81787 1.90704 1.65339 1.23025 1.61509 1.46103 1.24268 1.19935 1.46402 1.21677 0.93383 0.93618 0.91907 1.21879 0.93974 0.99716 1.00186 1.19030 0.94356 0.94560 0.93388 1.21232 1.07174 1.01449 1.26108 0.92634 1.25027 0.98165 0.94933 0.96326 1.69974 1.37451 1.13259 1.32552 0.86533 0.83056 0.79839 0.78546 1.19765 1.20987 1.20982 1.23083 0.92654 0.98706 1.00886 1.22831 0.96414 0.99066 0.99209 1.23223 1.00614 0.99862 0.92422 0.92358 0.91123 0.89342 0.91254 0.90100 0.91638 0.89260 0.91086 0.91728 0.75580 0.77068 0.91669 0.91644 0.92881 0.92812 0.96251 0.96251 0.92979 0.89491 0.89300 0.90459 0.88381 0.88222 0.89849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.77 8.37 37.16 0.31 -1.46 16 2 C 0.14 1.42 1.13 -90.62 -0.10 1.32 16 3 C -0.14 -1.09 8.85 37.16 0.33 -0.76 16 4 C -0.19 -2.19 8.37 37.15 0.31 -1.88 16 5 O -0.36 -4.15 9.94 -40.31 -0.40 -4.55 16 6 C 0.65 8.03 7.45 54.06 0.40 8.44 16 7 O -0.55 -8.34 10.92 -19.28 -0.21 -8.55 16 8 N -0.70 -6.95 4.44 -52.69 -0.23 -7.18 16 9 C 0.14 1.62 1.12 -132.06 -0.15 1.47 16 10 C 0.53 8.30 6.41 -10.99 -0.07 8.23 16 11 O -0.53 -10.10 15.25 5.56 0.08 -10.01 16 12 N -0.72 -11.26 5.45 -60.29 -0.33 -11.59 16 13 C 0.12 2.16 5.68 -4.04 -0.02 2.14 16 14 C -0.12 -2.43 5.27 -26.73 -0.14 -2.57 16 15 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 16 C -0.52 -14.69 9.11 -34.44 -0.31 -15.01 16 17 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.89 -26.96 13.29 55.43 0.74 -26.22 16 20 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 C -0.11 -1.26 6.33 -25.91 -0.16 -1.42 16 25 C -0.14 -1.27 7.67 -25.92 -0.20 -1.47 16 26 C -0.12 -1.01 7.40 -25.83 -0.19 -1.20 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 29 H 0.09 1.07 5.88 -51.93 -0.31 0.76 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.09 1.30 5.88 -51.92 -0.31 0.99 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 36 H 0.41 2.82 8.81 -40.82 -0.36 2.46 16 37 H 0.40 5.50 7.52 -40.82 -0.31 5.19 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 39 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 45 H 0.09 1.19 7.85 -51.93 -0.41 0.79 16 46 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.10 1.10 7.32 -51.93 -0.38 0.72 16 49 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 50 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 LS Contribution 401.42 15.07 6.05 6.05 Total: -1.00 -33.78 401.42 -8.35 -42.12 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -8.79 Total: 5.51 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: -0.23 Total: -2.14 kcal Atomic # 7 Polarization: -45.17 SS G_CDS: 0.17 Total: -44.99 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -0.53 Total: -23.11 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.78 -8.35 -42.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496703752.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.153 kcal (2) G-P(sol) polarization free energy of solvation -33.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds