Wall clock time and date at job start Tue Mar 31 2020 14:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.46995 * 2 1 4 4 C 1.52992 * 109.46848 * 239.99891 * 2 1 3 5 5 O 1.45199 * 109.46600 * 119.99893 * 2 1 3 6 6 C 1.34637 * 116.99996 * 60.00292 * 5 2 1 7 7 O 1.21511 * 120.00332 * 359.97438 * 6 5 2 8 8 N 1.34777 * 119.99743 * 179.97438 * 6 5 2 9 9 C 1.46501 * 119.99737 * 184.99883 * 8 6 5 10 10 C 1.50705 * 112.85024 * 66.34562 * 9 8 6 11 11 O 1.21282 * 119.99990 * 205.23543 * 10 9 8 12 12 N 1.34770 * 119.99673 * 25.23641 * 10 9 8 13 13 C 1.46504 * 120.00045 * 175.00410 * 12 10 9 14 14 C 1.52995 * 109.47188 * 179.97438 * 13 12 10 15 15 C 1.53007 * 109.46759 * 179.97438 * 14 13 12 16 16 C 1.50704 * 109.46790 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00246 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99865 * 179.97438 * 16 15 14 19 19 N 1.31510 * 119.99963 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99875 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47170 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47174 * 120.00431 * 20 18 16 23 23 H 1.48501 * 109.47042 * 240.00027 * 20 18 16 24 24 C 1.53788 * 113.61630 * 295.14742 * 9 8 6 25 25 C 1.53782 * 87.08094 * 220.01694 * 24 9 8 26 26 C 1.53778 * 87.17414 * 25.39279 * 25 24 9 27 27 H 1.08999 * 109.47295 * 300.00761 * 1 2 3 28 28 H 1.09010 * 109.46809 * 59.99807 * 1 2 3 29 29 H 1.08998 * 109.47382 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46897 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47309 * 299.99409 * 3 2 1 32 32 H 1.08996 * 109.47361 * 60.00170 * 3 2 1 33 33 H 1.09008 * 109.47397 * 300.00126 * 4 2 1 34 34 H 1.08998 * 109.47560 * 60.00528 * 4 2 1 35 35 H 1.09009 * 109.47295 * 180.02562 * 4 2 1 36 36 H 0.96997 * 120.00072 * 5.00347 * 8 6 5 37 37 H 0.97005 * 120.00446 * 354.99708 * 12 10 9 38 38 H 1.08998 * 109.46874 * 300.00134 * 13 12 10 39 39 H 1.09001 * 109.46685 * 59.99330 * 13 12 10 40 40 H 1.08995 * 109.47216 * 299.99483 * 14 13 12 41 41 H 1.09004 * 109.47024 * 60.00069 * 14 13 12 42 42 H 1.08995 * 109.47049 * 299.99848 * 15 14 13 43 43 H 1.08995 * 109.47282 * 60.00329 * 15 14 13 44 44 H 0.96996 * 119.99916 * 180.02562 * 19 18 16 45 45 H 1.09006 * 113.61040 * 105.47203 * 24 9 8 46 46 H 1.08992 * 113.61384 * 334.57056 * 24 9 8 47 47 H 1.09005 * 113.61425 * 139.97827 * 25 24 9 48 48 H 1.08995 * 113.61739 * 270.79907 * 25 24 9 49 49 H 1.09001 * 113.62025 * 89.14890 * 26 25 24 50 50 H 1.08998 * 113.61803 * 220.06318 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2492 5 8 2.0139 -0.6845 1.1856 6 6 1.6521 -1.9723 1.3383 7 8 0.9508 -2.5095 0.5040 8 7 2.0679 -2.6657 2.4167 9 6 1.7668 -4.0950 2.5292 10 6 2.4706 -4.9251 1.4867 11 8 2.0064 -5.9928 1.1469 12 7 3.6157 -4.4809 0.9321 13 6 4.3578 -5.3343 0.0007 14 6 5.6092 -4.5970 -0.4800 15 6 6.3844 -5.4887 -1.4523 16 6 7.6168 -4.7622 -1.9263 17 1 7.8264 -3.7647 -1.5695 18 6 8.4773 -5.3716 -2.8147 19 7 8.2223 -6.5865 -3.2488 20 14 10.0052 -4.4714 -3.4017 21 1 10.0626 -3.1291 -2.7691 22 1 11.2131 -5.2482 -3.0240 23 1 9.9548 -4.3216 -4.8783 24 6 0.2643 -4.4006 2.6488 25 6 0.6448 -5.4717 3.6846 26 6 1.9133 -4.6468 3.9590 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6766 -1.7490 -1.2492 34 1 1.6767 -0.2074 -2.1392 35 1 3.1300 -0.7217 -1.2490 36 1 2.5663 -2.2183 3.1183 37 1 3.9487 -3.5961 1.1494 38 1 4.6495 -6.2552 0.5055 39 1 3.7261 -5.5734 -0.8548 40 1 5.3170 -3.6764 -0.9850 41 1 6.2409 -4.3576 0.3754 42 1 6.6766 -6.4091 -0.9469 43 1 5.7529 -5.7285 -2.3077 44 1 8.8279 -7.0154 -3.8735 45 1 -0.1718 -4.8099 1.7375 46 1 -0.3168 -3.5777 3.0648 47 1 -0.0370 -5.5195 4.5338 48 1 0.8459 -6.4497 3.2476 49 1 1.7838 -3.8913 4.7339 50 1 2.8065 -5.2545 4.1040 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496703752.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:31 Heat of formation + Delta-G solvation = -136.628455 kcal Electronic energy + Delta-G solvation = -29348.584073 eV Core-core repulsion = 25375.234779 eV Total energy + Delta-G solvation = -3973.349294 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.40085 -41.26111 -39.02139 -37.85277 -36.94125 -35.52096 -35.18869 -34.14470 -32.97251 -29.03731 -28.36510 -28.27877 -27.05343 -26.81653 -25.04289 -23.53878 -22.41303 -22.37889 -21.06952 -20.29063 -19.25881 -18.75674 -18.56415 -17.40481 -17.24148 -16.90049 -16.79729 -16.52474 -16.30597 -15.87896 -15.68897 -15.31758 -15.28797 -14.67537 -14.44562 -14.22532 -13.81937 -13.70079 -13.36834 -13.33305 -13.30035 -13.02364 -12.89526 -12.84649 -12.79628 -12.66705 -12.62106 -12.43719 -12.38834 -12.21933 -12.15464 -11.76668 -11.66067 -11.58322 -11.38872 -11.28518 -11.14872 -11.07251 -10.58988 -10.25181 -10.16013 -8.21895 -6.33874 0.99360 1.40109 1.40522 1.42879 1.53837 1.67325 2.05604 2.40500 3.04639 3.11833 3.31587 3.44136 3.54235 3.75460 3.80289 3.81065 3.95392 4.05862 4.10473 4.27227 4.44949 4.54928 4.61400 4.66595 4.71960 4.75010 4.77661 4.84332 4.84944 4.86859 4.89884 4.91361 4.97647 5.00473 5.06104 5.07832 5.18581 5.28827 5.32599 5.34957 5.43342 5.46706 5.55965 5.63876 5.79649 6.18343 6.31979 6.41618 6.82776 7.06411 7.32169 7.35853 8.90560 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.010268 B = 0.003409 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2726.348393 B = 8210.506828 C =10295.290885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.130 3.870 3 C -0.135 4.135 4 C -0.184 4.184 5 O -0.362 6.362 6 C 0.643 3.357 7 O -0.581 6.581 8 N -0.687 5.687 9 C 0.141 3.859 10 C 0.522 3.478 11 O -0.571 6.571 12 N -0.711 5.711 13 C 0.130 3.870 14 C -0.099 4.099 15 C 0.026 3.974 16 C -0.541 4.541 17 H 0.065 0.935 18 C -0.002 4.002 19 N -0.934 5.934 20 Si 0.968 3.032 21 H -0.258 1.258 22 H -0.278 1.278 23 H -0.280 1.280 24 C -0.114 4.114 25 C -0.134 4.134 26 C -0.103 4.103 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.098 0.902 32 H 0.077 0.923 33 H 0.055 0.945 34 H 0.087 0.913 35 H 0.056 0.944 36 H 0.426 0.574 37 H 0.407 0.593 38 H 0.059 0.941 39 H 0.041 0.959 40 H 0.057 0.943 41 H 0.071 0.929 42 H -0.004 1.004 43 H -0.011 1.011 44 H 0.264 0.736 45 H 0.048 0.952 46 H 0.110 0.890 47 H 0.108 0.892 48 H 0.070 0.930 49 H 0.142 0.858 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.057 16.558 17.498 28.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.094 3.906 3 C -0.192 4.192 4 C -0.242 4.242 5 O -0.276 6.276 6 C 0.397 3.603 7 O -0.470 6.470 8 N -0.350 5.350 9 C 0.051 3.949 10 C 0.307 3.693 11 O -0.449 6.449 12 N -0.362 5.362 13 C 0.006 3.994 14 C -0.137 4.137 15 C -0.012 4.012 16 C -0.579 4.579 17 H 0.084 0.916 18 C -0.200 4.200 19 N -0.575 5.575 20 Si 0.793 3.207 21 H -0.182 1.182 22 H -0.203 1.203 23 H -0.206 1.206 24 C -0.153 4.153 25 C -0.172 4.172 26 C -0.141 4.141 27 H 0.089 0.911 28 H 0.105 0.895 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.117 0.883 32 H 0.096 0.904 33 H 0.074 0.926 34 H 0.105 0.895 35 H 0.075 0.925 36 H 0.266 0.734 37 H 0.243 0.757 38 H 0.078 0.922 39 H 0.059 0.941 40 H 0.076 0.924 41 H 0.090 0.910 42 H 0.014 0.986 43 H 0.007 0.993 44 H 0.073 0.927 45 H 0.067 0.933 46 H 0.128 0.872 47 H 0.127 0.873 48 H 0.089 0.911 49 H 0.160 0.840 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -16.628 15.476 16.667 28.174 hybrid contribution 1.162 0.225 -0.889 1.480 sum -15.465 15.701 15.778 27.104 Atomic orbital electron populations 1.22453 0.93602 1.03652 1.03762 1.22342 0.94739 0.92559 0.80982 1.21880 1.02390 0.90470 1.04495 1.22502 1.01479 1.02074 0.98097 1.86310 1.71300 1.22897 1.47110 1.18389 0.78791 0.80948 0.82207 1.90972 1.41100 1.70852 1.44095 1.44606 1.60534 1.07907 1.21954 1.22069 0.98167 0.77666 0.96951 1.20743 0.80307 0.86213 0.81989 1.90684 1.66196 1.25102 1.62908 1.45930 1.24374 1.20038 1.45816 1.21270 0.92601 0.93785 0.91727 1.21577 0.94112 0.98586 0.99431 1.18926 0.94248 0.94660 0.93361 1.21666 1.07880 1.02004 1.26345 0.91634 1.26030 1.01843 0.95726 0.96415 1.70118 1.38976 1.15083 1.33290 0.85349 0.78434 0.78996 0.77961 1.18183 1.20333 1.20577 1.23112 0.92219 0.99976 1.00030 1.22779 0.97733 0.97292 0.99397 1.23308 0.99947 1.00126 0.90676 0.91079 0.89543 0.92100 0.91462 0.88338 0.90358 0.92563 0.89456 0.92512 0.73420 0.75749 0.92239 0.94082 0.92398 0.91028 0.98552 0.99300 0.92749 0.93262 0.87185 0.87341 0.91146 0.84026 0.89785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.23 8.37 71.98 0.60 -2.63 16 2 C 0.13 2.52 1.13 -10.80 -0.01 2.51 16 3 C -0.14 -1.75 8.85 71.98 0.64 -1.11 16 4 C -0.18 -4.32 8.37 71.98 0.60 -3.72 16 5 O -0.36 -7.70 9.94 -55.46 -0.55 -8.25 16 6 C 0.64 15.45 7.45 129.79 0.97 16.42 16 7 O -0.58 -18.12 10.92 19.81 0.22 -17.90 16 8 N -0.69 -12.24 4.44 -551.03 -2.45 -14.69 16 9 C 0.14 3.02 1.12 3.45 0.00 3.02 16 10 C 0.52 16.69 6.41 87.66 0.56 17.25 16 11 O -0.57 -22.89 15.25 -3.04 -0.05 -22.93 16 12 N -0.71 -22.55 5.45 -463.06 -2.53 -25.08 16 13 C 0.13 5.02 5.68 86.38 0.49 5.51 16 14 C -0.10 -4.07 5.27 30.60 0.16 -3.91 16 15 C 0.03 1.38 4.97 29.85 0.15 1.53 16 16 C -0.54 -30.73 9.11 25.60 0.23 -30.50 16 17 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 18 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 19 N -0.93 -57.66 13.29 21.45 0.28 -57.38 16 20 Si 0.97 44.13 29.54 68.60 2.03 46.15 16 21 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 22 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 23 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 24 C -0.11 -2.44 6.33 31.12 0.20 -2.24 16 25 C -0.13 -2.26 7.67 31.12 0.24 -2.02 16 26 C -0.10 -1.38 7.40 31.18 0.23 -1.15 16 27 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 29 H 0.06 1.48 5.88 -2.39 -0.01 1.47 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.06 1.71 5.88 -2.38 -0.01 1.70 16 34 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 36 H 0.43 4.49 8.81 -92.71 -0.82 3.68 16 37 H 0.41 10.99 7.52 -92.70 -0.70 10.29 16 38 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 41 H 0.07 2.70 8.14 -2.38 -0.02 2.68 16 42 H 0.00 -0.23 8.14 -2.39 -0.02 -0.24 16 43 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 44 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 45 H 0.05 1.43 7.85 -2.38 -0.02 1.41 16 46 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 47 H 0.11 1.17 8.14 -2.38 -0.02 1.15 16 48 H 0.07 1.61 7.32 -2.39 -0.02 1.59 16 49 H 0.14 0.79 8.14 -2.39 -0.02 0.77 16 50 H 0.08 1.19 8.10 -2.39 -0.02 1.17 16 Total: -1.00 -77.36 401.42 1.90 -75.46 By element: Atomic # 1 Polarization: 25.92 SS G_CDS: -0.58 Total: 25.34 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: 5.53 Total: -0.74 kcal Atomic # 7 Polarization: -92.45 SS G_CDS: -4.69 Total: -97.14 kcal Atomic # 8 Polarization: -48.70 SS G_CDS: -0.38 Total: -49.08 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Total: -77.36 1.90 -75.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496703752.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.166 kcal (2) G-P(sol) polarization free energy of solvation -77.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds