Wall clock time and date at job start Tue Mar 31 2020 14:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47109 * 2 1 4 4 C 1.53001 * 109.46690 * 119.99240 * 2 1 3 5 5 O 1.45202 * 109.46710 * 175.00023 * 4 2 1 6 6 C 1.34646 * 116.99729 * 180.02562 * 5 4 2 7 7 O 1.21514 * 119.99797 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99711 * 180.02562 * 6 5 4 9 9 C 1.43521 * 119.01092 * 180.02562 * 8 6 5 10 10 C 1.53800 * 107.93423 * 273.72044 * 9 8 6 11 11 C 1.47144 * 111.77574 * 281.56181 * 10 9 8 12 12 N 1.48205 * 110.34272 * 58.33108 * 11 10 9 13 13 C 1.34780 * 119.97247 * 102.46270 * 12 11 10 14 14 O 1.21278 * 119.99798 * 0.02562 * 13 12 11 15 15 C 1.50696 * 120.00096 * 179.97438 * 13 12 11 16 16 C 1.53005 * 109.47166 * 180.02562 * 15 13 12 17 17 C 1.50695 * 109.47450 * 180.02562 * 16 15 13 18 18 H 1.08004 * 120.00003 * 359.97438 * 17 16 15 19 19 C 1.37872 * 120.00179 * 179.97438 * 17 16 15 20 20 N 1.31510 * 120.00088 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 120.00053 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47004 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47039 * 119.99745 * 21 19 17 24 24 H 1.48505 * 109.47076 * 239.99769 * 21 19 17 25 25 C 1.43624 * 120.06023 * 282.48235 * 12 11 10 26 26 C 1.48854 * 118.94140 * 359.97438 * 8 6 5 27 27 H 1.08997 * 109.47315 * 300.00814 * 1 2 3 28 28 H 1.09007 * 109.46874 * 60.00282 * 1 2 3 29 29 H 1.08997 * 109.47563 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47713 * 239.99462 * 2 1 3 31 31 H 1.08997 * 109.47697 * 59.99420 * 3 2 1 32 32 H 1.09002 * 109.47397 * 179.97438 * 3 2 1 33 33 H 1.09007 * 109.47022 * 299.99627 * 3 2 1 34 34 H 1.09003 * 109.46833 * 55.00823 * 4 2 1 35 35 H 1.08992 * 109.47709 * 295.00074 * 4 2 1 36 36 H 1.08996 * 109.84040 * 154.07536 * 9 8 6 37 37 H 1.08999 * 109.71890 * 33.28902 * 9 8 6 38 38 H 1.09002 * 109.00960 * 160.99168 * 10 9 8 39 39 H 1.09002 * 109.00466 * 42.12516 * 10 9 8 40 40 H 1.08996 * 109.32175 * 178.60022 * 11 10 9 41 41 H 1.08999 * 109.32157 * 298.06426 * 11 10 9 42 42 H 1.09005 * 109.47409 * 299.99915 * 15 13 12 43 43 H 1.08994 * 109.47147 * 60.00541 * 15 13 12 44 44 H 1.09005 * 109.46510 * 300.00004 * 16 15 13 45 45 H 1.08996 * 109.47178 * 59.99237 * 16 15 13 46 46 H 0.97002 * 120.00297 * 180.02562 * 20 19 17 47 47 H 1.09002 * 108.87474 * 211.45436 * 25 12 11 48 48 H 1.08999 * 108.87434 * 329.89280 * 25 12 11 49 49 H 1.09000 * 109.48102 * 20.64318 * 26 8 6 50 50 H 1.09001 * 109.48449 * 260.60380 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 1.2494 5 8 3.4870 -0.8253 1.1912 6 6 4.0975 -1.4389 2.2226 7 8 3.4391 -1.8750 3.1461 8 7 5.4390 -1.5686 2.2310 9 6 6.0678 -2.2268 3.3406 10 6 6.3096 -1.1774 4.4387 11 6 7.4863 -0.3434 4.1471 12 7 7.3203 0.3445 2.8449 13 6 6.9766 1.6473 2.8106 14 8 6.8037 2.2562 3.8451 15 6 6.8081 2.3476 1.4869 16 6 6.4201 3.8078 1.7282 17 6 6.2510 4.5080 0.4045 18 1 6.4054 3.9659 -0.5168 19 6 5.8993 5.8407 0.3695 20 7 5.7109 6.5007 1.4913 21 14 5.6905 6.7088 -1.2713 22 1 5.9578 5.7520 -2.3751 23 1 4.3020 7.2225 -1.3863 24 1 6.6463 7.8421 -1.3569 25 6 7.5249 -0.3759 1.6194 26 6 6.2224 -1.0252 1.0878 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8898 31 1 1.6766 1.9564 0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6053 -1.7197 1.2953 35 1 1.7516 -0.1582 2.1370 36 1 7.0186 -2.6564 3.0255 37 1 5.4150 -3.0131 3.7198 38 1 6.4628 -1.6875 5.3897 39 1 5.4311 -0.5368 4.5171 40 1 7.6057 0.4000 4.9352 41 1 8.3750 -0.9735 4.1115 42 1 7.7461 2.3081 0.9330 43 1 6.0253 1.8536 0.9116 44 1 5.4822 3.8476 2.2823 45 1 7.2032 4.3016 2.3035 46 1 5.4631 7.4382 1.4667 47 1 7.9091 0.3118 0.8660 48 1 8.2644 -1.1584 1.7896 49 1 5.6295 -0.2749 0.5648 50 1 6.4728 -1.8342 0.4015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496723875.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:56 Heat of formation + Delta-G solvation = -127.236561 kcal Electronic energy + Delta-G solvation = -30048.697551 eV Core-core repulsion = 26075.755520 eV Total energy + Delta-G solvation = -3972.942031 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.88698 -39.67712 -37.83337 -36.52851 -35.05138 -34.42069 -33.78192 -33.10157 -30.81740 -28.60657 -27.37932 -27.12890 -26.21499 -25.46224 -23.22893 -22.69423 -20.92364 -20.35828 -20.17669 -18.73658 -17.96520 -17.15658 -16.87703 -16.73540 -16.03327 -15.84009 -15.42545 -15.09622 -14.61662 -14.42532 -14.36699 -14.05053 -13.71817 -13.48095 -13.36042 -13.10783 -12.90092 -12.60074 -12.53058 -12.21564 -12.14212 -12.08824 -11.85407 -11.49732 -11.31075 -11.17583 -11.12588 -11.10085 -10.99384 -10.94654 -10.76905 -10.57233 -10.47620 -10.42639 -9.95770 -9.63324 -9.18660 -9.01738 -8.85369 -8.46856 -8.31959 -5.95906 -4.00207 2.13283 2.83957 3.14563 3.27210 3.31813 3.39308 3.42054 3.73650 4.46551 4.64152 4.68742 4.75460 4.76213 4.78227 4.87954 5.03125 5.11710 5.22540 5.31155 5.33663 5.36648 5.39252 5.44473 5.46746 5.53783 5.62888 5.64561 5.67886 5.72001 5.83854 5.89558 5.97218 6.06359 6.14839 6.16820 6.20585 6.23203 6.39070 6.48479 6.51036 6.74153 6.87850 7.20776 7.73695 7.75392 7.86117 8.07217 8.29615 8.38305 8.72798 9.08275 9.63360 11.15116 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.008771 B = 0.004896 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3191.549662 B = 5717.853678 C = 8094.838623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 C -0.149 4.149 4 C 0.092 3.908 5 O -0.363 6.363 6 C 0.647 3.353 7 O -0.576 6.576 8 N -0.585 5.585 9 C 0.137 3.863 10 C -0.159 4.159 11 C 0.116 3.884 12 N -0.617 5.617 13 C 0.512 3.488 14 O -0.530 6.530 15 C -0.128 4.128 16 C 0.038 3.962 17 C -0.523 4.523 18 H 0.056 0.944 19 C 0.059 3.941 20 N -0.889 5.889 21 Si 0.890 3.110 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 C 0.100 3.900 26 C 0.090 3.910 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.055 0.945 30 H 0.080 0.920 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.090 0.910 41 H 0.067 0.933 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.022 0.978 45 H 0.022 0.978 46 H 0.260 0.740 47 H 0.096 0.904 48 H 0.076 0.924 49 H 0.097 0.903 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.094 -20.871 -2.387 21.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 C -0.206 4.206 4 C 0.018 3.982 5 O -0.276 6.276 6 C 0.402 3.598 7 O -0.466 6.466 8 N -0.325 5.325 9 C 0.014 3.986 10 C -0.198 4.198 11 C -0.006 4.006 12 N -0.352 5.352 13 C 0.302 3.698 14 O -0.405 6.405 15 C -0.168 4.168 16 C 0.001 3.999 17 C -0.562 4.562 18 H 0.074 0.926 19 C -0.143 4.143 20 N -0.528 5.528 21 Si 0.718 3.282 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.211 1.211 25 C -0.026 4.026 26 C -0.034 4.034 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.098 0.902 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.099 0.901 39 H 0.091 0.909 40 H 0.108 0.892 41 H 0.086 0.914 42 H 0.097 0.903 43 H 0.096 0.904 44 H 0.040 0.960 45 H 0.041 0.959 46 H 0.070 0.930 47 H 0.114 0.886 48 H 0.094 0.906 49 H 0.115 0.885 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.482 -20.452 -1.487 20.559 hybrid contribution -0.224 0.451 -0.816 0.959 sum -1.705 -20.002 -2.303 20.206 Atomic orbital electron populations 1.21772 0.93793 1.01900 1.02750 1.21190 0.95730 0.97556 0.96874 1.21838 1.02577 0.94062 1.02151 1.23091 0.74808 1.00769 0.99556 1.86233 1.24412 1.72764 1.44223 1.18128 0.83306 0.77427 0.80940 1.90969 1.64472 1.53820 1.37327 1.46523 1.02612 1.60057 1.23330 1.21068 0.97769 0.94537 0.85191 1.21564 1.00503 0.98690 0.99056 1.20593 0.96946 0.96220 0.86862 1.47756 1.71335 1.10420 1.05709 1.21636 0.74468 0.80458 0.93213 1.90658 1.48838 1.65046 1.35924 1.21905 1.02029 1.00700 0.92134 1.18890 0.97667 0.86522 0.96856 1.21218 1.47284 0.95262 0.92402 0.92594 1.25009 0.95494 0.97613 0.96168 1.70008 1.47352 1.09561 1.25882 0.86576 0.77722 0.79714 0.84199 1.19718 1.21035 1.21053 1.21553 0.95729 0.97165 0.88158 1.23091 0.93981 0.98856 0.87443 0.92192 0.91559 0.92586 0.90195 0.92463 0.91318 0.92319 0.91568 0.91180 0.89868 0.89637 0.90075 0.90886 0.89184 0.91440 0.90287 0.90374 0.95987 0.95944 0.93034 0.88610 0.90570 0.88489 0.90266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.19 37.16 0.34 -0.95 16 2 C -0.09 -1.04 3.17 -90.62 -0.29 -1.32 16 3 C -0.15 -1.97 9.09 37.16 0.34 -1.63 16 4 C 0.09 1.17 4.85 37.16 0.18 1.35 16 5 O -0.36 -5.22 8.37 -40.34 -0.34 -5.56 16 6 C 0.65 9.85 8.10 54.05 0.44 10.29 16 7 O -0.58 -10.15 15.64 -19.28 -0.30 -10.45 16 8 N -0.59 -7.18 2.50 -178.15 -0.45 -7.63 16 9 C 0.14 1.41 5.34 -5.20 -0.03 1.38 16 10 C -0.16 -1.86 5.64 -29.13 -0.16 -2.03 16 11 C 0.12 1.41 5.69 -5.92 -0.03 1.38 16 12 N -0.62 -8.70 2.46 -176.62 -0.43 -9.13 16 13 C 0.51 9.95 7.67 -10.99 -0.08 9.86 16 14 O -0.53 -12.70 15.42 5.56 0.09 -12.62 16 15 C -0.13 -2.57 4.19 -27.88 -0.12 -2.68 16 16 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 17 C -0.52 -14.59 9.11 -34.44 -0.31 -14.91 16 18 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 19 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 20 N -0.89 -27.33 13.29 55.43 0.74 -26.59 16 21 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 22 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 25 C 0.10 1.00 5.05 -4.54 -0.02 0.98 16 26 C 0.09 0.90 6.68 -1.72 -0.01 0.89 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 1.03 7.82 -51.93 -0.41 0.63 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.08 0.60 7.58 -51.93 -0.39 0.21 16 37 H 0.09 0.92 7.41 -51.93 -0.38 0.54 16 38 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.07 1.18 7.89 -51.93 -0.41 0.77 16 40 H 0.09 1.31 7.12 -51.93 -0.37 0.94 16 41 H 0.07 0.60 8.05 -51.93 -0.42 0.19 16 42 H 0.08 1.42 7.37 -51.93 -0.38 1.04 16 43 H 0.08 1.46 7.32 -51.93 -0.38 1.08 16 44 H 0.02 0.65 8.10 -51.93 -0.42 0.23 16 45 H 0.02 0.66 8.10 -51.93 -0.42 0.24 16 46 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 47 H 0.10 0.93 6.38 -51.93 -0.33 0.60 16 48 H 0.08 0.55 7.73 -51.93 -0.40 0.14 16 49 H 0.10 1.14 6.27 -51.93 -0.33 0.81 16 50 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 396.64 15.07 5.98 5.98 Total: -1.00 -36.33 396.64 -8.53 -44.86 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -8.81 Total: -0.37 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: 0.02 Total: 5.09 kcal Atomic # 7 Polarization: -43.20 SS G_CDS: -0.14 Total: -43.35 kcal Atomic # 8 Polarization: -28.07 SS G_CDS: -0.55 Total: -28.62 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.33 -8.53 -44.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496723875.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.376 kcal (2) G-P(sol) polarization free energy of solvation -36.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds