Wall clock time and date at job start Tue Mar 31 2020 14:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47109 * 2 1 4 4 C 1.53001 * 109.46690 * 119.99240 * 2 1 3 5 5 O 1.45202 * 109.46710 * 175.00023 * 4 2 1 6 6 C 1.34646 * 116.99729 * 180.02562 * 5 4 2 7 7 O 1.21514 * 119.99797 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99711 * 180.02562 * 6 5 4 9 9 C 1.43521 * 119.01092 * 180.02562 * 8 6 5 10 10 C 1.53800 * 107.93423 * 273.72044 * 9 8 6 11 11 C 1.47144 * 111.77574 * 281.56181 * 10 9 8 12 12 N 1.48205 * 110.34272 * 58.33108 * 11 10 9 13 13 C 1.34780 * 119.97247 * 102.46270 * 12 11 10 14 14 O 1.21278 * 119.99798 * 0.02562 * 13 12 11 15 15 C 1.50696 * 120.00096 * 179.97438 * 13 12 11 16 16 C 1.53005 * 109.47166 * 180.02562 * 15 13 12 17 17 C 1.50695 * 109.47450 * 180.02562 * 16 15 13 18 18 H 1.08004 * 120.00003 * 359.97438 * 17 16 15 19 19 C 1.37872 * 120.00179 * 179.97438 * 17 16 15 20 20 N 1.31510 * 120.00088 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 120.00053 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47004 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47039 * 119.99745 * 21 19 17 24 24 H 1.48505 * 109.47076 * 239.99769 * 21 19 17 25 25 C 1.43624 * 120.06023 * 282.48235 * 12 11 10 26 26 C 1.48854 * 118.94140 * 359.97438 * 8 6 5 27 27 H 1.08997 * 109.47315 * 300.00814 * 1 2 3 28 28 H 1.09007 * 109.46874 * 60.00282 * 1 2 3 29 29 H 1.08997 * 109.47563 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47713 * 239.99462 * 2 1 3 31 31 H 1.08997 * 109.47697 * 59.99420 * 3 2 1 32 32 H 1.09002 * 109.47397 * 179.97438 * 3 2 1 33 33 H 1.09007 * 109.47022 * 299.99627 * 3 2 1 34 34 H 1.09003 * 109.46833 * 55.00823 * 4 2 1 35 35 H 1.08992 * 109.47709 * 295.00074 * 4 2 1 36 36 H 1.08996 * 109.84040 * 154.07536 * 9 8 6 37 37 H 1.08999 * 109.71890 * 33.28902 * 9 8 6 38 38 H 1.09002 * 109.00960 * 160.99168 * 10 9 8 39 39 H 1.09002 * 109.00466 * 42.12516 * 10 9 8 40 40 H 1.08996 * 109.32175 * 178.60022 * 11 10 9 41 41 H 1.08999 * 109.32157 * 298.06426 * 11 10 9 42 42 H 1.09005 * 109.47409 * 299.99915 * 15 13 12 43 43 H 1.08994 * 109.47147 * 60.00541 * 15 13 12 44 44 H 1.09005 * 109.46510 * 300.00004 * 16 15 13 45 45 H 1.08996 * 109.47178 * 59.99237 * 16 15 13 46 46 H 0.97002 * 120.00297 * 180.02562 * 20 19 17 47 47 H 1.09002 * 108.87474 * 211.45436 * 25 12 11 48 48 H 1.08999 * 108.87434 * 329.89280 * 25 12 11 49 49 H 1.09000 * 109.48102 * 20.64318 * 26 8 6 50 50 H 1.09001 * 109.48449 * 260.60380 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 1.2494 5 8 3.4870 -0.8253 1.1912 6 6 4.0975 -1.4389 2.2226 7 8 3.4391 -1.8750 3.1461 8 7 5.4390 -1.5686 2.2310 9 6 6.0678 -2.2268 3.3406 10 6 6.3096 -1.1774 4.4387 11 6 7.4863 -0.3434 4.1471 12 7 7.3203 0.3445 2.8449 13 6 6.9766 1.6473 2.8106 14 8 6.8037 2.2562 3.8451 15 6 6.8081 2.3476 1.4869 16 6 6.4201 3.8078 1.7282 17 6 6.2510 4.5080 0.4045 18 1 6.4054 3.9659 -0.5168 19 6 5.8993 5.8407 0.3695 20 7 5.7109 6.5007 1.4913 21 14 5.6905 6.7088 -1.2713 22 1 5.9578 5.7520 -2.3751 23 1 4.3020 7.2225 -1.3863 24 1 6.6463 7.8421 -1.3569 25 6 7.5249 -0.3759 1.6194 26 6 6.2224 -1.0252 1.0878 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8898 31 1 1.6766 1.9564 0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6053 -1.7197 1.2953 35 1 1.7516 -0.1582 2.1370 36 1 7.0186 -2.6564 3.0255 37 1 5.4150 -3.0131 3.7198 38 1 6.4628 -1.6875 5.3897 39 1 5.4311 -0.5368 4.5171 40 1 7.6057 0.4000 4.9352 41 1 8.3750 -0.9735 4.1115 42 1 7.7461 2.3081 0.9330 43 1 6.0253 1.8536 0.9116 44 1 5.4822 3.8476 2.2823 45 1 7.2032 4.3016 2.3035 46 1 5.4631 7.4382 1.4667 47 1 7.9091 0.3118 0.8660 48 1 8.2644 -1.1584 1.7896 49 1 5.6295 -0.2749 0.5648 50 1 6.4728 -1.8342 0.4015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496723875.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:55 Heat of formation + Delta-G solvation = -150.934764 kcal Electronic energy + Delta-G solvation = -30049.725182 eV Core-core repulsion = 26075.755520 eV Total energy + Delta-G solvation = -3973.969662 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.98683 -40.98972 -39.00853 -37.72607 -36.06780 -35.67182 -35.57308 -34.39526 -32.73401 -29.64828 -28.53562 -28.08439 -27.64802 -26.78702 -24.55777 -23.93462 -22.52345 -21.34551 -21.15993 -19.99845 -19.24520 -18.56200 -18.23516 -17.83961 -17.56076 -17.16178 -16.71192 -16.42003 -16.08037 -15.86388 -15.46908 -15.06919 -14.82199 -14.66017 -14.46256 -14.39087 -14.16634 -13.88848 -13.75078 -13.57647 -13.49815 -13.16477 -13.03620 -12.86914 -12.85315 -12.47487 -12.36439 -12.22041 -12.17459 -12.07736 -12.00772 -11.89245 -11.75963 -11.59412 -11.57432 -11.50356 -11.28278 -10.67837 -10.57976 -9.91952 -9.59109 -8.17308 -6.31392 1.13941 1.42159 1.43603 1.56854 1.65538 1.70203 2.07290 2.43504 2.79387 3.16170 3.68786 3.74200 3.80661 3.87929 3.92771 3.99125 4.05780 4.11003 4.31050 4.33334 4.40157 4.44982 4.46099 4.54231 4.56484 4.59573 4.69855 4.73340 4.80862 4.83337 4.83775 4.93222 4.96850 4.98505 5.06132 5.15310 5.20628 5.22463 5.37967 5.43073 5.48295 5.57462 5.60728 5.68687 5.84658 6.15236 6.17375 6.44798 6.86950 7.18779 7.27176 7.39212 8.95897 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.008771 B = 0.004896 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3191.549662 B = 5717.853678 C = 8094.838623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.084 4.084 3 C -0.149 4.149 4 C 0.089 3.911 5 O -0.367 6.367 6 C 0.634 3.366 7 O -0.611 6.611 8 N -0.581 5.581 9 C 0.137 3.863 10 C -0.152 4.152 11 C 0.114 3.886 12 N -0.603 5.603 13 C 0.506 3.494 14 O -0.593 6.593 15 C -0.114 4.114 16 C 0.046 3.954 17 C -0.535 4.535 18 H 0.078 0.922 19 C -0.007 4.007 20 N -0.940 5.940 21 Si 0.971 3.029 22 H -0.248 1.248 23 H -0.282 1.282 24 H -0.281 1.281 25 C 0.088 3.912 26 C 0.088 3.912 27 H 0.052 0.948 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.037 0.963 32 H 0.045 0.955 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.047 0.953 36 H 0.133 0.867 37 H 0.080 0.920 38 H 0.106 0.894 39 H 0.016 0.984 40 H 0.057 0.943 41 H 0.121 0.879 42 H 0.110 0.890 43 H 0.094 0.906 44 H -0.029 1.029 45 H -0.020 1.020 46 H 0.262 0.738 47 H 0.105 0.895 48 H 0.127 0.873 49 H 0.075 0.925 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.470 -23.862 -5.670 24.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.103 4.103 3 C -0.207 4.207 4 C 0.014 3.986 5 O -0.281 6.281 6 C 0.389 3.611 7 O -0.503 6.503 8 N -0.320 5.320 9 C 0.015 3.985 10 C -0.191 4.191 11 C -0.007 4.007 12 N -0.336 5.336 13 C 0.297 3.703 14 O -0.473 6.473 15 C -0.153 4.153 16 C 0.008 3.992 17 C -0.572 4.572 18 H 0.097 0.903 19 C -0.204 4.204 20 N -0.580 5.580 21 Si 0.795 3.205 22 H -0.171 1.171 23 H -0.208 1.208 24 H -0.207 1.207 25 C -0.036 4.036 26 C -0.034 4.034 27 H 0.071 0.929 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.114 0.886 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.065 0.935 36 H 0.151 0.849 37 H 0.098 0.902 38 H 0.124 0.876 39 H 0.035 0.965 40 H 0.076 0.924 41 H 0.139 0.861 42 H 0.128 0.872 43 H 0.112 0.888 44 H -0.010 1.010 45 H -0.002 1.002 46 H 0.070 0.930 47 H 0.123 0.877 48 H 0.145 0.855 49 H 0.094 0.906 50 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.123 -23.517 -4.819 24.006 hybrid contribution -0.691 1.335 0.275 1.528 sum -0.569 -22.182 -4.544 22.650 Atomic orbital electron populations 1.21772 0.91977 1.03134 1.03028 1.21172 0.97088 0.95572 0.96462 1.21830 1.01045 0.95955 1.01825 1.23228 0.74380 1.01323 0.99623 1.86240 1.25164 1.72641 1.44021 1.18547 0.84436 0.77412 0.80722 1.90933 1.65519 1.55388 1.38470 1.46799 1.01625 1.59329 1.24291 1.21292 0.99664 0.93488 0.84076 1.21507 0.97814 0.98396 1.01382 1.20805 0.99188 0.95761 0.84916 1.47725 1.68784 1.08715 1.08328 1.21496 0.74502 0.82446 0.91865 1.90637 1.52049 1.67110 1.37519 1.21636 1.03846 0.96433 0.93389 1.18650 0.93835 0.91041 0.95625 1.21683 1.46588 0.95755 0.93219 0.90350 1.26131 0.94919 0.98772 1.00547 1.70199 1.48705 1.10024 1.29116 0.85310 0.77531 0.78496 0.79160 1.17147 1.20834 1.20680 1.22013 0.96874 0.98354 0.86361 1.23295 0.93079 0.99864 0.87149 0.92920 0.90301 0.90880 0.88602 0.94340 0.93625 0.91072 0.90346 0.93465 0.84911 0.90174 0.87593 0.96478 0.92426 0.86071 0.87201 0.88756 1.01050 1.00154 0.92975 0.87664 0.85536 0.90602 0.85833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 9.19 71.98 0.66 -1.71 16 2 C -0.08 -1.81 3.17 -10.79 -0.03 -1.84 16 3 C -0.15 -4.06 9.09 71.98 0.65 -3.41 16 4 C 0.09 2.32 4.85 71.98 0.35 2.66 16 5 O -0.37 -10.67 8.37 -55.55 -0.47 -11.14 16 6 C 0.63 19.34 8.10 129.79 1.05 20.39 16 7 O -0.61 -22.18 15.64 19.79 0.31 -21.87 16 8 N -0.58 -13.06 2.50 -947.95 -2.37 -15.43 16 9 C 0.14 2.38 5.34 87.20 0.47 2.85 16 10 C -0.15 -3.40 5.64 29.04 0.16 -3.24 16 11 C 0.11 2.57 5.69 84.23 0.48 3.05 16 12 N -0.60 -15.98 2.46 -831.09 -2.04 -18.02 16 13 C 0.51 20.26 7.67 87.66 0.67 20.93 16 14 O -0.59 -30.65 15.42 -3.02 -0.05 -30.70 16 15 C -0.11 -4.61 4.19 29.85 0.13 -4.49 16 16 C 0.05 2.62 4.26 29.85 0.13 2.74 16 17 C -0.53 -30.33 9.11 25.60 0.23 -30.09 16 18 H 0.08 4.00 7.74 -2.91 -0.02 3.98 16 19 C -0.01 -0.38 5.46 84.65 0.46 0.08 16 20 N -0.94 -60.38 13.29 21.44 0.28 -60.10 16 21 Si 0.97 44.12 29.54 68.60 2.03 46.15 16 22 H -0.25 -10.23 7.11 99.48 0.71 -9.52 16 23 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 24 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 25 C 0.09 1.36 5.05 87.57 0.44 1.81 16 26 C 0.09 1.45 6.68 86.59 0.58 2.03 16 27 H 0.05 0.95 8.14 -2.39 -0.02 0.94 16 28 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 29 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.04 1.42 7.82 -2.39 -0.02 1.40 16 33 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 34 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.13 1.06 7.58 -2.39 -0.02 1.05 16 37 H 0.08 1.55 7.41 -2.39 -0.02 1.53 16 38 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.02 0.56 7.89 -2.39 -0.02 0.55 16 40 H 0.06 1.71 7.12 -2.39 -0.02 1.69 16 41 H 0.12 1.52 8.05 -2.39 -0.02 1.50 16 42 H 0.11 3.75 7.37 -2.38 -0.02 3.74 16 43 H 0.09 3.51 7.32 -2.39 -0.02 3.49 16 44 H -0.03 -1.91 8.10 -2.38 -0.02 -1.93 16 45 H -0.02 -1.28 8.10 -2.39 -0.02 -1.30 16 46 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 47 H 0.11 1.54 6.38 -2.39 -0.02 1.52 16 48 H 0.13 0.85 7.73 -2.39 -0.02 0.83 16 49 H 0.08 1.62 6.27 -2.39 -0.01 1.60 16 50 H 0.12 1.06 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -89.38 396.64 5.03 -84.36 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: 0.90 Total: 14.97 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: 6.43 Total: 11.78 kcal Atomic # 7 Polarization: -89.42 SS G_CDS: -4.13 Total: -93.55 kcal Atomic # 8 Polarization: -63.50 SS G_CDS: -0.20 Total: -63.71 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -89.38 5.03 -84.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496723875.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.580 kcal (2) G-P(sol) polarization free energy of solvation -89.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds