Wall clock time and date at job start Tue Mar 31 2020 16:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.47055 * 2 1 4 4 N 1.46497 * 109.47080 * 120.00175 * 2 1 3 5 5 C 1.46498 * 119.99973 * 299.99939 * 4 2 1 6 6 C 1.50709 * 109.46985 * 269.99711 * 5 4 2 7 7 H 1.08000 * 119.99463 * 0.02562 * 6 5 4 8 8 C 1.37868 * 119.99864 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00353 * 0.02562 * 8 6 5 10 10 Si 1.86807 * 119.99766 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47182 * 60.00087 * 10 8 6 12 12 H 1.48501 * 109.47176 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.46909 * 299.99715 * 10 8 6 14 14 C 1.34772 * 119.99896 * 119.99595 * 4 2 1 15 15 O 1.21288 * 119.99820 * 179.97438 * 14 4 2 16 16 C 1.50703 * 120.00224 * 359.97438 * 14 4 2 17 17 H 1.09001 * 115.55837 * 63.19340 * 16 14 4 18 18 C 1.52994 * 117.49919 * 277.50689 * 16 14 4 19 19 C 1.53002 * 60.03428 * 252.52117 * 18 16 14 20 20 H 1.09000 * 117.49754 * 252.47965 * 19 18 16 21 21 N 1.46495 * 117.49892 * 107.47527 * 19 18 16 22 22 C 1.34783 * 120.00001 * 158.69770 * 21 19 18 23 23 O 1.21512 * 119.99571 * 0.02562 * 22 21 19 24 24 O 1.34635 * 119.99978 * 180.02562 * 22 21 19 25 25 C 1.45207 * 116.99767 * 180.02562 * 24 22 21 26 26 C 1.52998 * 109.46929 * 60.00103 * 25 24 22 27 27 C 1.53000 * 109.46838 * 179.97438 * 25 24 22 28 28 C 1.52994 * 109.46876 * 300.00061 * 25 24 22 29 29 H 1.09007 * 109.46732 * 300.00266 * 1 2 3 30 30 H 1.09001 * 109.46933 * 59.99527 * 1 2 3 31 31 H 1.09000 * 109.47184 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46511 * 240.00083 * 2 1 3 33 33 H 1.09010 * 109.46810 * 180.02562 * 3 2 1 34 34 H 1.08996 * 109.47431 * 299.99609 * 3 2 1 35 35 H 1.09000 * 109.47393 * 60.00623 * 3 2 1 36 36 H 1.08995 * 109.47462 * 29.99783 * 5 4 2 37 37 H 1.09002 * 109.47306 * 150.00576 * 5 4 2 38 38 H 0.97010 * 120.00209 * 180.02562 * 9 8 6 39 39 H 1.09002 * 117.50225 * 145.02062 * 18 16 14 40 40 H 1.09003 * 117.50101 * 0.02562 * 18 16 14 41 41 H 0.96999 * 120.00258 * 338.69981 * 21 19 18 42 42 H 1.08997 * 109.47605 * 59.99594 * 26 25 24 43 43 H 1.09001 * 109.47343 * 180.02562 * 26 25 24 44 44 H 1.09001 * 109.47489 * 299.99600 * 26 25 24 45 45 H 1.09000 * 109.47216 * 60.00391 * 27 25 24 46 46 H 1.09001 * 109.46417 * 180.02562 * 27 25 24 47 47 H 1.08997 * 109.46875 * 299.99903 * 27 25 24 48 48 H 1.09001 * 109.47354 * 60.00515 * 28 25 24 49 49 H 1.08999 * 109.47057 * 180.02562 * 28 25 24 50 50 H 1.09000 * 109.47368 * 299.99725 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.6645 -0.1902 2.5267 6 6 2.7033 0.8018 2.9830 7 1 3.5429 1.0361 2.3453 8 6 2.5813 1.4107 4.2139 9 7 1.5587 1.1256 4.9901 10 14 3.8686 2.6407 4.7791 11 1 3.9239 3.7746 3.8219 12 1 3.5094 3.1489 6.1274 13 1 5.1957 1.9768 4.8373 14 6 2.7931 -1.7864 1.0724 15 8 3.1978 -2.3580 2.0627 16 6 3.1567 -2.3017 -0.2963 17 1 3.7541 -1.6269 -0.9094 18 6 2.1355 -3.1885 -1.0115 19 6 3.4148 -3.8036 -0.4405 20 1 4.1819 -4.1173 -1.1485 21 7 3.2894 -4.6299 0.7627 22 6 4.2481 -5.5272 1.0669 23 8 5.2165 -5.6504 0.3434 24 8 4.1326 -6.2869 2.1724 25 6 5.2030 -7.2315 2.4378 26 6 6.5235 -6.4749 2.5950 27 6 4.8986 -7.9983 3.7264 28 6 5.3149 -8.2161 1.2721 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1301 1.4424 -0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 0.6905 0.2974 2.4844 37 1 1.6239 -1.0227 3.2291 38 1 1.4727 1.5543 5.8561 39 1 2.0611 -3.0973 -2.0952 40 1 1.2005 -3.3990 -0.4923 41 1 2.5165 -4.5313 1.3404 42 1 6.4438 -5.7734 3.4254 43 1 7.3271 -7.1840 2.7938 44 1 6.7406 -5.9284 1.6773 45 1 3.9578 -8.5373 3.6148 46 1 5.7024 -8.7070 3.9258 47 1 4.8192 -7.2965 4.5566 48 1 5.5321 -7.6695 0.3544 49 1 6.1181 -8.9255 1.4716 50 1 4.3742 -8.7551 1.1602 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496815085.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:39 Heat of formation + Delta-G solvation = -94.141096 kcal Electronic energy + Delta-G solvation = -29459.405153 eV Core-core repulsion = 25487.898249 eV Total energy + Delta-G solvation = -3971.506904 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.67454 -39.64592 -37.58508 -36.27362 -35.65728 -34.13419 -32.84208 -32.37492 -30.80219 -27.65202 -27.45001 -27.36722 -26.74035 -24.35800 -23.36813 -22.34247 -21.38404 -20.82503 -20.04425 -18.19511 -18.02668 -16.92287 -16.44930 -16.25867 -15.93889 -15.37549 -15.14325 -14.76881 -14.38423 -14.33161 -14.06995 -13.66540 -13.48906 -13.40780 -12.99514 -12.53848 -12.46895 -12.38754 -12.27495 -12.14070 -11.91679 -11.87188 -11.76466 -11.65205 -11.55015 -11.29755 -11.28028 -11.10153 -10.95236 -10.83626 -10.65139 -10.41681 -10.33582 -10.29053 -10.00997 -9.93792 -9.55452 -8.97386 -8.61423 -8.41216 -7.65143 -6.03135 -4.06344 2.25832 2.92734 3.26399 3.32057 3.36639 3.40812 3.81049 3.96838 4.17897 4.45381 4.69189 4.70794 4.74714 4.86529 4.88204 4.89158 5.28689 5.31095 5.37269 5.40930 5.47128 5.51528 5.58393 5.59741 5.62783 5.69925 5.72953 5.83017 5.85502 5.94210 5.95288 6.01404 6.15781 6.23043 6.27578 6.33259 6.36661 6.52952 6.59833 6.67397 6.96352 7.11071 7.45308 7.56848 7.61028 7.93606 8.25530 8.44541 8.56396 8.91560 9.10255 9.57925 11.04878 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.012007 B = 0.003618 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.485892 B = 7736.217893 C = 9289.122803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.135 3.865 3 C -0.158 4.158 4 N -0.586 5.586 5 C 0.247 3.753 6 C -0.519 4.519 7 H 0.057 0.943 8 C 0.061 3.939 9 N -0.896 5.896 10 Si 0.894 3.106 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.277 1.277 14 C 0.531 3.469 15 O -0.532 6.532 16 C -0.195 4.195 17 H 0.130 0.870 18 C -0.167 4.167 19 C 0.128 3.872 20 H 0.145 0.855 21 N -0.664 5.664 22 C 0.663 3.337 23 O -0.578 6.578 24 O -0.361 6.361 25 C 0.136 3.864 26 C -0.184 4.184 27 C -0.141 4.141 28 C -0.182 4.182 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.077 0.923 33 H 0.053 0.947 34 H 0.048 0.952 35 H 0.080 0.920 36 H 0.034 0.966 37 H 0.040 0.960 38 H 0.263 0.737 39 H 0.113 0.887 40 H 0.102 0.898 41 H 0.412 0.588 42 H 0.062 0.938 43 H 0.067 0.933 44 H 0.088 0.912 45 H 0.065 0.935 46 H 0.078 0.922 47 H 0.069 0.931 48 H 0.088 0.912 49 H 0.067 0.933 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.973 -13.125 -12.080 17.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.031 3.969 3 C -0.216 4.216 4 N -0.318 5.318 5 C 0.128 3.872 6 C -0.558 4.558 7 H 0.075 0.925 8 C -0.141 4.141 9 N -0.535 5.535 10 Si 0.722 3.278 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.203 1.203 14 C 0.317 3.683 15 O -0.410 6.410 16 C -0.218 4.218 17 H 0.148 0.852 18 C -0.205 4.205 19 C 0.021 3.979 20 H 0.163 0.837 21 N -0.320 5.320 22 C 0.416 3.584 23 O -0.469 6.469 24 O -0.275 6.275 25 C 0.100 3.900 26 C -0.241 4.241 27 C -0.198 4.198 28 C -0.239 4.239 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.095 0.905 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.099 0.901 36 H 0.052 0.948 37 H 0.058 0.942 38 H 0.072 0.928 39 H 0.132 0.868 40 H 0.121 0.879 41 H 0.248 0.752 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.107 0.893 45 H 0.084 0.916 46 H 0.097 0.903 47 H 0.088 0.912 48 H 0.107 0.893 49 H 0.086 0.914 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.598 -13.510 -11.623 17.893 hybrid contribution 0.409 1.076 0.667 1.330 sum 2.008 -12.434 -10.956 16.693 Atomic orbital electron populations 1.22149 0.95694 1.01657 1.02365 1.20969 0.93947 0.93953 0.88071 1.22148 1.01337 0.95851 1.02245 1.48305 1.48655 1.26173 1.08661 1.19230 0.95858 0.94935 0.77181 1.21394 1.08888 1.23434 1.02098 0.92485 1.24906 0.95707 0.97108 0.96339 1.69918 1.29496 1.43346 1.10722 0.86625 0.82118 0.81306 0.77772 1.20282 1.21248 1.20278 1.19336 0.79257 0.81169 0.88575 1.90694 1.52994 1.58361 1.38912 1.22963 1.04858 0.95584 0.98432 0.85202 1.23503 0.94329 1.01785 1.00918 1.21442 1.00277 0.87934 0.88224 0.83734 1.43815 1.24076 1.37411 1.26682 1.17847 0.82165 0.78628 0.79712 1.90843 1.31550 1.71754 1.52736 1.86330 1.49103 1.49776 1.42300 1.22024 0.85294 0.86969 0.95749 1.22513 0.95704 1.01253 1.04650 1.21858 1.02630 0.99873 0.95479 1.22513 1.02181 0.99184 1.00021 0.91437 0.92331 0.92993 0.90457 0.92817 0.93318 0.90134 0.94798 0.94161 0.92764 0.86840 0.87931 0.75189 0.91871 0.91442 0.89339 0.91585 0.90328 0.91243 0.89349 0.91363 0.92348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 9.17 37.16 0.34 -1.89 16 2 C 0.14 2.10 3.17 -67.93 -0.22 1.89 16 3 C -0.16 -2.55 8.47 37.16 0.31 -2.24 16 4 N -0.59 -11.75 2.39 -167.47 -0.40 -12.15 16 5 C 0.25 6.20 4.59 -5.19 -0.02 6.18 16 6 C -0.52 -14.29 7.83 -34.44 -0.27 -14.56 16 7 H 0.06 1.58 7.63 -52.49 -0.40 1.18 16 8 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 9 N -0.90 -26.26 13.29 55.43 0.74 -25.53 16 10 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 14 C 0.53 10.53 7.18 -10.99 -0.08 10.46 16 15 O -0.53 -12.85 14.55 5.55 0.08 -12.77 16 16 C -0.20 -2.78 4.25 -91.73 -0.39 -3.17 16 17 H 0.13 1.63 8.01 -51.93 -0.42 1.21 16 18 C -0.17 -1.76 9.86 -26.73 -0.26 -2.02 16 19 C 0.13 1.70 6.36 -67.89 -0.43 1.27 16 20 H 0.15 1.81 7.44 -51.93 -0.39 1.42 16 21 N -0.66 -10.31 4.18 -58.69 -0.25 -10.56 16 22 C 0.66 11.00 8.06 54.06 0.44 11.43 16 23 O -0.58 -10.06 11.47 -19.28 -0.22 -10.28 16 24 O -0.36 -5.70 9.94 -40.31 -0.40 -6.10 16 25 C 0.14 1.74 1.13 -90.62 -0.10 1.64 16 26 C -0.18 -2.41 8.37 37.16 0.31 -2.10 16 27 C -0.14 -1.42 8.85 37.16 0.33 -1.09 16 28 C -0.18 -2.04 8.37 37.15 0.31 -1.73 16 29 H 0.07 1.09 6.66 -51.93 -0.35 0.75 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.99 5.87 -51.93 -0.30 0.69 16 33 H 0.05 0.91 8.14 -51.92 -0.42 0.49 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.08 1.55 6.92 -51.93 -0.36 1.19 16 36 H 0.03 0.86 6.43 -51.93 -0.33 0.53 16 37 H 0.04 1.16 7.42 -51.93 -0.39 0.77 16 38 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 39 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.41 6.52 8.09 -40.82 -0.33 6.19 16 42 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.09 1.36 5.88 -51.93 -0.31 1.05 16 45 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.09 1.17 5.88 -51.93 -0.31 0.87 16 49 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 50 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 398.18 15.07 6.00 6.00 Total: -1.00 -33.25 398.18 -7.80 -41.06 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -8.50 Total: 7.83 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: 0.17 Total: 5.69 kcal Atomic # 7 Polarization: -48.33 SS G_CDS: 0.09 Total: -48.24 kcal Atomic # 8 Polarization: -28.61 SS G_CDS: -0.54 Total: -29.15 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.25 -7.80 -41.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496815085.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.084 kcal (2) G-P(sol) polarization free energy of solvation -33.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds