Wall clock time and date at job start Tue Mar 31 2020 16:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.47055 * 2 1 4 4 N 1.46497 * 109.47080 * 120.00175 * 2 1 3 5 5 C 1.46498 * 119.99973 * 299.99939 * 4 2 1 6 6 C 1.50709 * 109.46985 * 269.99711 * 5 4 2 7 7 H 1.08000 * 119.99463 * 0.02562 * 6 5 4 8 8 C 1.37868 * 119.99864 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00353 * 0.02562 * 8 6 5 10 10 Si 1.86807 * 119.99766 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47182 * 60.00087 * 10 8 6 12 12 H 1.48501 * 109.47176 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.46909 * 299.99715 * 10 8 6 14 14 C 1.34772 * 119.99896 * 119.99595 * 4 2 1 15 15 O 1.21288 * 119.99820 * 179.97438 * 14 4 2 16 16 C 1.50703 * 120.00224 * 359.97438 * 14 4 2 17 17 H 1.09001 * 115.55837 * 63.19340 * 16 14 4 18 18 C 1.52994 * 117.49919 * 277.50689 * 16 14 4 19 19 C 1.53002 * 60.03428 * 252.52117 * 18 16 14 20 20 H 1.09000 * 117.49754 * 252.47965 * 19 18 16 21 21 N 1.46495 * 117.49892 * 107.47527 * 19 18 16 22 22 C 1.34783 * 120.00001 * 158.69770 * 21 19 18 23 23 O 1.21512 * 119.99571 * 0.02562 * 22 21 19 24 24 O 1.34635 * 119.99978 * 180.02562 * 22 21 19 25 25 C 1.45207 * 116.99767 * 180.02562 * 24 22 21 26 26 C 1.52998 * 109.46929 * 60.00103 * 25 24 22 27 27 C 1.53000 * 109.46838 * 179.97438 * 25 24 22 28 28 C 1.52994 * 109.46876 * 300.00061 * 25 24 22 29 29 H 1.09007 * 109.46732 * 300.00266 * 1 2 3 30 30 H 1.09001 * 109.46933 * 59.99527 * 1 2 3 31 31 H 1.09000 * 109.47184 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46511 * 240.00083 * 2 1 3 33 33 H 1.09010 * 109.46810 * 180.02562 * 3 2 1 34 34 H 1.08996 * 109.47431 * 299.99609 * 3 2 1 35 35 H 1.09000 * 109.47393 * 60.00623 * 3 2 1 36 36 H 1.08995 * 109.47462 * 29.99783 * 5 4 2 37 37 H 1.09002 * 109.47306 * 150.00576 * 5 4 2 38 38 H 0.97010 * 120.00209 * 180.02562 * 9 8 6 39 39 H 1.09002 * 117.50225 * 145.02062 * 18 16 14 40 40 H 1.09003 * 117.50101 * 0.02562 * 18 16 14 41 41 H 0.96999 * 120.00258 * 338.69981 * 21 19 18 42 42 H 1.08997 * 109.47605 * 59.99594 * 26 25 24 43 43 H 1.09001 * 109.47343 * 180.02562 * 26 25 24 44 44 H 1.09001 * 109.47489 * 299.99600 * 26 25 24 45 45 H 1.09000 * 109.47216 * 60.00391 * 27 25 24 46 46 H 1.09001 * 109.46417 * 180.02562 * 27 25 24 47 47 H 1.08997 * 109.46875 * 299.99903 * 27 25 24 48 48 H 1.09001 * 109.47354 * 60.00515 * 28 25 24 49 49 H 1.08999 * 109.47057 * 180.02562 * 28 25 24 50 50 H 1.09000 * 109.47368 * 299.99725 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.6645 -0.1902 2.5267 6 6 2.7033 0.8018 2.9830 7 1 3.5429 1.0361 2.3453 8 6 2.5813 1.4107 4.2139 9 7 1.5587 1.1256 4.9901 10 14 3.8686 2.6407 4.7791 11 1 3.9239 3.7746 3.8219 12 1 3.5094 3.1489 6.1274 13 1 5.1957 1.9768 4.8373 14 6 2.7931 -1.7864 1.0724 15 8 3.1978 -2.3580 2.0627 16 6 3.1567 -2.3017 -0.2963 17 1 3.7541 -1.6269 -0.9094 18 6 2.1355 -3.1885 -1.0115 19 6 3.4148 -3.8036 -0.4405 20 1 4.1819 -4.1173 -1.1485 21 7 3.2894 -4.6299 0.7627 22 6 4.2481 -5.5272 1.0669 23 8 5.2165 -5.6504 0.3434 24 8 4.1326 -6.2869 2.1724 25 6 5.2030 -7.2315 2.4378 26 6 6.5235 -6.4749 2.5950 27 6 4.8986 -7.9983 3.7264 28 6 5.3149 -8.2161 1.2721 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1301 1.4424 -0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 0.6905 0.2974 2.4844 37 1 1.6239 -1.0227 3.2291 38 1 1.4727 1.5543 5.8561 39 1 2.0611 -3.0973 -2.0952 40 1 1.2005 -3.3990 -0.4923 41 1 2.5165 -4.5313 1.3404 42 1 6.4438 -5.7734 3.4254 43 1 7.3271 -7.1840 2.7938 44 1 6.7406 -5.9284 1.6773 45 1 3.9578 -8.5373 3.6148 46 1 5.7024 -8.7070 3.9258 47 1 4.8192 -7.2965 4.5566 48 1 5.5321 -7.6695 0.3544 49 1 6.1181 -8.9255 1.4716 50 1 4.3742 -8.7551 1.1602 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496815085.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:38 Heat of formation + Delta-G solvation = -115.756561 kcal Electronic energy + Delta-G solvation = -29460.342469 eV Core-core repulsion = 25487.898249 eV Total energy + Delta-G solvation = -3972.444221 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.86331 -41.03972 -38.80981 -37.58891 -37.07661 -35.24113 -34.89537 -33.54019 -32.36244 -29.58210 -28.36283 -28.29982 -27.96599 -26.02055 -24.49111 -23.92400 -22.54500 -22.13037 -21.15098 -19.45617 -19.34526 -18.60067 -18.22425 -17.46885 -17.13117 -16.93778 -16.45676 -16.31385 -15.83335 -15.41684 -15.30184 -15.03120 -14.80587 -14.57032 -14.29485 -14.17198 -13.80066 -13.38197 -13.36397 -13.34579 -13.24752 -13.09012 -12.89741 -12.85915 -12.82992 -12.75771 -12.68878 -12.54421 -12.30267 -12.21290 -12.17040 -12.07768 -11.65433 -11.57321 -11.43664 -11.37811 -11.11081 -10.61189 -10.49677 -9.80540 -9.37262 -8.19872 -6.31359 1.17371 1.33622 1.37343 1.44035 1.70260 1.82162 2.30568 2.44297 2.85852 3.09540 3.11013 3.60433 3.70130 3.75507 3.80185 3.85822 3.94989 4.08249 4.28253 4.36498 4.48288 4.50693 4.60007 4.62417 4.75561 4.79332 4.83118 4.85941 4.87035 4.89481 4.91130 4.99057 5.06610 5.09263 5.11064 5.15600 5.26128 5.28017 5.30602 5.42325 5.47196 5.58085 5.59827 5.65971 5.92800 6.12178 6.37353 6.74910 6.88963 7.32004 7.34280 7.55379 8.86746 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.012007 B = 0.003618 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.485892 B = 7736.217893 C = 9289.122803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.129 3.871 3 C -0.154 4.154 4 N -0.590 5.590 5 C 0.266 3.734 6 C -0.526 4.526 7 H 0.050 0.950 8 C 0.008 3.992 9 N -0.928 5.928 10 Si 0.956 3.044 11 H -0.261 1.261 12 H -0.280 1.280 13 H -0.283 1.283 14 C 0.521 3.479 15 O -0.589 6.589 16 C -0.208 4.208 17 H 0.155 0.845 18 C -0.121 4.121 19 C 0.110 3.890 20 H 0.155 0.845 21 N -0.668 5.668 22 C 0.654 3.346 23 O -0.591 6.591 24 O -0.377 6.377 25 C 0.121 3.879 26 C -0.180 4.180 27 C -0.137 4.137 28 C -0.173 4.173 29 H 0.034 0.966 30 H 0.096 0.904 31 H 0.060 0.940 32 H 0.119 0.881 33 H 0.040 0.960 34 H 0.089 0.911 35 H 0.040 0.960 36 H 0.025 0.975 37 H -0.009 1.009 38 H 0.265 0.735 39 H 0.162 0.838 40 H 0.102 0.898 41 H 0.407 0.593 42 H 0.045 0.955 43 H 0.097 0.903 44 H 0.062 0.938 45 H 0.072 0.928 46 H 0.108 0.892 47 H 0.056 0.944 48 H 0.065 0.935 49 H 0.094 0.906 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.168 -13.548 -14.891 20.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.026 3.974 3 C -0.212 4.212 4 N -0.321 5.321 5 C 0.145 3.855 6 C -0.565 4.565 7 H 0.069 0.931 8 C -0.190 4.190 9 N -0.569 5.569 10 Si 0.782 3.218 11 H -0.185 1.185 12 H -0.205 1.205 13 H -0.209 1.209 14 C 0.310 3.690 15 O -0.470 6.470 16 C -0.230 4.230 17 H 0.172 0.828 18 C -0.159 4.159 19 C 0.004 3.996 20 H 0.173 0.827 21 N -0.322 5.322 22 C 0.408 3.592 23 O -0.483 6.483 24 O -0.292 6.292 25 C 0.085 3.915 26 C -0.238 4.238 27 C -0.194 4.194 28 C -0.231 4.231 29 H 0.053 0.947 30 H 0.114 0.886 31 H 0.079 0.921 32 H 0.137 0.863 33 H 0.059 0.941 34 H 0.108 0.892 35 H 0.059 0.941 36 H 0.043 0.957 37 H 0.010 0.990 38 H 0.073 0.927 39 H 0.180 0.820 40 H 0.120 0.880 41 H 0.242 0.758 42 H 0.064 0.936 43 H 0.116 0.884 44 H 0.081 0.919 45 H 0.091 0.909 46 H 0.127 0.873 47 H 0.075 0.925 48 H 0.084 0.916 49 H 0.113 0.887 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.777 -13.912 -14.489 20.165 hybrid contribution 0.345 1.179 1.545 1.974 sum 2.122 -12.733 -12.944 18.281 Atomic orbital electron populations 1.22111 0.94268 1.02344 1.02553 1.21377 0.95117 0.93544 0.87346 1.22099 1.00468 0.96325 1.02280 1.48319 1.48870 1.26730 1.08154 1.18601 0.95032 0.92480 0.79377 1.21637 1.08970 1.23665 1.02226 0.93148 1.25742 0.97686 0.99043 0.96554 1.70035 1.31207 1.44545 1.11095 0.85638 0.78968 0.79369 0.77867 1.18508 1.20466 1.20865 1.20330 0.77928 0.80320 0.90467 1.90664 1.54874 1.59876 1.41553 1.22861 1.08049 0.96442 0.95694 0.82768 1.23707 0.92546 0.96572 1.03099 1.21784 1.03038 0.86851 0.87878 0.82725 1.44000 1.23563 1.37382 1.27304 1.18068 0.82250 0.78985 0.79865 1.90824 1.31956 1.72321 1.53216 1.86338 1.50472 1.50343 1.42054 1.22462 0.84382 0.86919 0.97730 1.22477 0.97239 1.01526 1.02518 1.21898 1.04214 0.99799 0.93475 1.22432 1.03547 0.98908 0.98162 0.94721 0.88575 0.92093 0.86303 0.94094 0.89220 0.94076 0.95678 0.99041 0.92659 0.81994 0.87979 0.75816 0.93595 0.88392 0.91907 0.90865 0.87334 0.92451 0.91589 0.88709 0.91624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.98 9.17 71.98 0.66 -3.32 16 2 C 0.13 3.75 3.17 44.99 0.14 3.89 16 3 C -0.15 -4.74 8.47 71.98 0.61 -4.13 16 4 N -0.59 -23.99 2.39 -802.13 -1.91 -25.90 16 5 C 0.27 14.12 4.59 85.64 0.39 14.51 16 6 C -0.53 -30.12 7.83 25.60 0.20 -29.92 16 7 H 0.05 2.88 7.63 -2.91 -0.02 2.86 16 8 C 0.01 0.48 5.46 84.65 0.46 0.94 16 9 N -0.93 -56.50 13.29 21.44 0.28 -56.22 16 10 Si 0.96 45.72 29.54 68.60 2.03 47.75 16 11 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 12 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 13 H -0.28 -13.69 7.11 99.48 0.71 -12.99 16 14 C 0.52 20.94 7.18 87.66 0.63 21.57 16 15 O -0.59 -29.93 14.55 -3.05 -0.04 -29.97 16 16 C -0.21 -5.47 4.25 -11.52 -0.05 -5.52 16 17 H 0.15 3.32 8.01 -2.39 -0.02 3.30 16 18 C -0.12 -2.07 9.86 30.59 0.30 -1.77 16 19 C 0.11 2.75 6.36 45.02 0.29 3.04 16 20 H 0.16 3.55 7.44 -2.39 -0.02 3.54 16 21 N -0.67 -21.06 4.18 -570.00 -2.38 -23.44 16 22 C 0.65 22.34 8.06 129.79 1.05 23.39 16 23 O -0.59 -20.99 11.47 19.80 0.23 -20.76 16 24 O -0.38 -12.34 9.94 -55.45 -0.55 -12.90 16 25 C 0.12 3.08 1.13 -10.80 -0.01 3.06 16 26 C -0.18 -4.79 8.37 71.98 0.60 -4.19 16 27 C -0.14 -2.62 8.85 71.98 0.64 -1.98 16 28 C -0.17 -3.71 8.37 71.98 0.60 -3.11 16 29 H 0.03 1.11 6.66 -2.38 -0.02 1.10 16 30 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.12 2.52 5.87 -2.39 -0.01 2.51 16 33 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 34 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.04 1.59 6.92 -2.39 -0.02 1.57 16 36 H 0.03 1.36 6.43 -2.39 -0.02 1.35 16 37 H -0.01 -0.53 7.42 -2.39 -0.02 -0.55 16 38 H 0.26 15.23 8.31 -92.70 -0.77 14.46 16 39 H 0.16 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.41 13.42 8.09 -92.71 -0.75 12.67 16 42 H 0.04 1.33 8.14 -2.39 -0.02 1.32 16 43 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 44 H 0.06 2.00 5.88 -2.39 -0.01 1.98 16 45 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 47 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 48 H 0.07 1.73 5.88 -2.39 -0.01 1.72 16 49 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 50 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -79.59 398.18 4.34 -75.25 By element: Atomic # 1 Polarization: 29.55 SS G_CDS: 0.18 Total: 29.73 kcal Atomic # 6 Polarization: 9.96 SS G_CDS: 6.51 Total: 16.47 kcal Atomic # 7 Polarization: -101.55 SS G_CDS: -4.01 Total: -105.57 kcal Atomic # 8 Polarization: -63.26 SS G_CDS: -0.37 Total: -63.63 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -79.59 4.34 -75.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496815085.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.509 kcal (2) G-P(sol) polarization free energy of solvation -79.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds