Wall clock time and date at job start Tue Mar 31 2020 14:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.47002 * 2 1 4 4 C 1.53002 * 109.46789 * 240.00272 * 2 1 3 5 5 O 1.45195 * 109.47295 * 120.00184 * 2 1 3 6 6 C 1.34639 * 116.99859 * 59.99522 * 5 2 1 7 7 O 1.21513 * 120.00235 * 0.02562 * 6 5 2 8 8 N 1.34780 * 119.99860 * 179.97438 * 6 5 2 9 9 C 1.46501 * 119.99719 * 180.02562 * 8 6 5 10 10 C 1.53001 * 109.46872 * 185.00039 * 9 8 6 11 11 H 1.09000 * 110.00030 * 306.33147 * 10 9 8 12 12 C 1.54325 * 109.88310 * 67.42814 * 10 9 8 13 13 C 1.55154 * 102.94161 * 141.61066 * 12 10 9 14 14 C 1.55128 * 101.48687 * 324.33141 * 13 12 10 15 15 N 1.47021 * 109.88148 * 185.23481 * 10 9 8 16 16 C 1.34779 * 125.64723 * 61.60760 * 15 10 9 17 17 O 1.21277 * 120.00374 * 355.07451 * 16 15 10 18 18 C 1.50709 * 119.99937 * 175.07587 * 16 15 10 19 19 C 1.52994 * 109.47094 * 179.97438 * 18 16 15 20 20 C 1.50699 * 109.47061 * 180.02562 * 19 18 16 21 21 H 1.07994 * 120.00118 * 359.97438 * 20 19 18 22 22 C 1.37880 * 119.99856 * 180.02562 * 20 19 18 23 23 N 1.31522 * 119.99829 * 180.02562 * 22 20 19 24 24 Si 1.86796 * 120.00319 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.47152 * 90.00135 * 24 22 20 26 26 H 1.48502 * 109.46967 * 330.00445 * 24 22 20 27 27 H 1.48492 * 109.47376 * 210.00100 * 24 22 20 28 28 H 1.09002 * 109.46964 * 299.99819 * 1 2 3 29 29 H 1.08994 * 109.47154 * 59.99619 * 1 2 3 30 30 H 1.09001 * 109.47300 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46493 * 180.02562 * 3 2 1 32 32 H 1.08994 * 109.47477 * 300.00183 * 3 2 1 33 33 H 1.09002 * 109.47113 * 60.00272 * 3 2 1 34 34 H 1.09001 * 109.46978 * 299.99926 * 4 2 1 35 35 H 1.08994 * 109.47183 * 60.00127 * 4 2 1 36 36 H 1.08997 * 109.46964 * 179.97438 * 4 2 1 37 37 H 0.96999 * 120.00109 * 0.02562 * 8 6 5 38 38 H 1.09006 * 109.47081 * 65.00385 * 9 8 6 39 39 H 1.09000 * 109.47580 * 305.00026 * 9 8 6 40 40 H 1.09001 * 110.71934 * 259.97531 * 12 10 9 41 41 H 1.08996 * 110.71682 * 23.24368 * 12 10 9 42 42 H 1.08996 * 111.00868 * 82.57415 * 13 12 10 43 43 H 1.09010 * 111.00254 * 206.42453 * 13 12 10 44 44 H 1.09005 * 110.49594 * 278.45779 * 14 13 12 45 45 H 1.09000 * 110.34483 * 156.06206 * 14 13 12 46 46 H 1.08997 * 109.46920 * 59.99445 * 18 16 15 47 47 H 1.09004 * 109.47041 * 299.99900 * 18 16 15 48 48 H 1.08997 * 109.47573 * 59.99988 * 19 18 16 49 49 H 1.09004 * 109.47212 * 299.99939 * 19 18 16 50 50 H 0.96999 * 119.99760 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0141 -0.6845 1.1855 6 6 1.6522 -1.9723 1.3382 7 8 0.9515 -2.5097 0.5035 8 7 2.0681 -2.6658 2.4165 9 6 1.6748 -4.0672 2.5825 10 6 2.1700 -4.5789 3.9367 11 1 3.2407 -4.3996 4.0341 12 6 1.4125 -3.8653 5.0763 13 6 1.2049 -4.9967 6.1174 14 6 0.9756 -6.2247 5.1976 15 7 1.8904 -6.0170 4.0604 16 6 2.3843 -6.9846 3.2627 17 8 3.0554 -6.6902 2.2963 18 6 2.1026 -8.4326 3.5715 19 6 2.7727 -9.3182 2.5192 20 6 2.4905 -10.7660 2.8277 21 1 1.8934 -11.0283 3.6884 22 6 2.9957 -11.7559 2.0116 23 7 2.7490 -13.0195 2.2805 24 14 4.0292 -11.3024 0.5232 25 1 5.4603 -11.2397 0.9147 26 1 3.5990 -9.9782 0.0067 27 1 3.8501 -12.3285 -0.5351 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9564 0.8900 34 1 1.6766 -1.7489 -1.2493 35 1 1.6767 -0.2074 -2.1392 36 1 3.1300 -0.7208 -1.2496 37 1 2.6278 -2.2369 3.0827 38 1 2.1158 -4.6652 1.7848 39 1 0.5887 -4.1475 2.5388 40 1 2.0164 -3.0608 5.4961 41 1 0.4538 -3.4853 4.7232 42 1 2.0935 -5.1274 6.7349 43 1 0.3272 -4.8037 6.7344 44 1 -0.0579 -6.2552 4.8523 45 1 1.2278 -7.1450 5.7242 46 1 1.0263 -8.6041 3.5583 47 1 2.4974 -8.6772 4.5577 48 1 3.8491 -9.1467 2.5320 49 1 2.3775 -9.0734 1.5333 50 1 3.1046 -13.7159 1.7066 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496849816.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:03 Heat of formation + Delta-G solvation = -128.274450 kcal Electronic energy + Delta-G solvation = -28474.485490 eV Core-core repulsion = 24501.498453 eV Total energy + Delta-G solvation = -3972.987037 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.96778 -40.12492 -37.86096 -37.18307 -34.99398 -34.13433 -33.49440 -31.84972 -31.08964 -30.06857 -27.70667 -27.62796 -26.23637 -25.75568 -23.15256 -22.29226 -21.53212 -20.63705 -20.16522 -18.87982 -18.10855 -17.24263 -17.06197 -16.52976 -16.35689 -16.07638 -15.05838 -15.01612 -14.87860 -14.63433 -14.32119 -14.19904 -13.93642 -13.69167 -13.37084 -13.16267 -12.89847 -12.78780 -12.62823 -12.44678 -12.36091 -12.18178 -12.16062 -12.01486 -11.71698 -11.58180 -11.53166 -11.32708 -11.19511 -11.05751 -10.94839 -10.59252 -10.22492 -10.16323 -10.04441 -9.78062 -9.41136 -9.19412 -9.14819 -8.63209 -8.49861 -6.02655 -4.01424 1.92712 2.71701 3.01646 3.08848 3.38843 3.45602 3.57100 4.00418 4.23006 4.30968 4.43404 4.47544 4.51757 4.52915 4.62131 4.85957 5.00969 5.13129 5.16604 5.24929 5.24978 5.28884 5.32911 5.39612 5.44315 5.47261 5.49833 5.56812 5.59091 5.61462 5.68895 5.77541 5.83439 5.90608 5.99778 6.04285 6.05390 6.08899 6.18211 6.33293 6.42417 6.67346 7.23762 7.35880 7.43266 7.63829 7.79657 8.23815 8.46841 8.57063 9.00064 9.60455 11.10077 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.013579 B = 0.002692 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.483316 B =10396.985049 C =12037.687764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.136 3.864 3 C -0.140 4.140 4 C -0.185 4.185 5 O -0.367 6.367 6 C 0.649 3.351 7 O -0.564 6.564 8 N -0.705 5.705 9 C 0.124 3.876 10 C 0.127 3.873 11 H 0.080 0.920 12 C -0.130 4.130 13 C -0.132 4.132 14 C 0.100 3.900 15 N -0.623 5.623 16 C 0.527 3.473 17 O -0.532 6.532 18 C -0.116 4.116 19 C 0.001 3.999 20 C -0.524 4.524 21 H 0.073 0.927 22 C 0.069 3.931 23 N -0.903 5.903 24 Si 0.877 3.123 25 H -0.277 1.277 26 H -0.261 1.261 27 H -0.288 1.288 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.089 0.911 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.404 0.596 38 H 0.089 0.911 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.084 0.916 44 H 0.070 0.930 45 H 0.085 0.915 46 H 0.086 0.914 47 H 0.086 0.914 48 H 0.019 0.981 49 H 0.024 0.976 50 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.379 29.957 4.891 30.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.100 3.900 3 C -0.197 4.197 4 C -0.242 4.242 5 O -0.282 6.282 6 C 0.402 3.598 7 O -0.452 6.452 8 N -0.365 5.365 9 C 0.001 3.999 10 C 0.023 3.977 11 H 0.098 0.902 12 C -0.168 4.168 13 C -0.170 4.170 14 C -0.023 4.023 15 N -0.360 5.360 16 C 0.318 3.682 17 O -0.407 6.407 18 C -0.156 4.156 19 C -0.037 4.037 20 C -0.562 4.562 21 H 0.091 0.909 22 C -0.132 4.132 23 N -0.542 5.542 24 Si 0.704 3.296 25 H -0.203 1.203 26 H -0.185 1.185 27 H -0.214 1.214 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.107 0.893 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.085 0.915 34 H 0.108 0.892 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.238 0.762 38 H 0.107 0.893 39 H 0.092 0.908 40 H 0.100 0.900 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.103 0.897 44 H 0.088 0.912 45 H 0.103 0.897 46 H 0.104 0.896 47 H 0.104 0.896 48 H 0.037 0.963 49 H 0.042 0.958 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.305 29.620 3.756 30.166 hybrid contribution 0.743 0.292 -0.481 0.932 sum -3.562 29.912 3.275 30.301 Atomic orbital electron populations 1.22518 0.94000 1.05156 1.02383 1.22062 0.94357 0.91442 0.82172 1.21857 1.02272 0.92538 1.03048 1.22528 1.01650 1.03683 0.96373 1.86280 1.71709 1.23712 1.46507 1.18028 0.79070 0.80428 0.82252 1.90929 1.41036 1.70336 1.42942 1.44557 1.55614 1.12634 1.23699 1.21827 1.00712 0.78656 0.98724 1.21616 1.00114 0.82325 0.93679 0.90173 1.22774 1.01060 0.97885 0.95106 1.22820 1.02919 0.94166 0.97117 1.22391 0.93830 0.99349 0.86755 1.48700 1.49540 1.05101 1.32670 1.21401 0.77857 0.87963 0.80977 1.90666 1.38989 1.83573 1.27479 1.21667 1.03001 0.87997 1.02897 1.19389 0.95955 0.94346 0.94013 1.21090 1.33617 0.88658 1.12871 0.90919 1.24968 0.95831 0.94816 0.97602 1.69913 1.45884 0.99369 1.39043 0.86803 0.81010 0.78848 0.82956 1.20252 1.18494 1.21433 0.92240 0.91151 0.89314 0.91467 0.90149 0.91524 0.89233 0.91144 0.92121 0.76203 0.89262 0.90819 0.90006 0.90241 0.90340 0.89740 0.91170 0.89664 0.89578 0.89557 0.96270 0.95767 0.92717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.68 8.37 37.16 0.31 -1.37 16 2 C 0.14 1.30 1.13 -90.61 -0.10 1.20 16 3 C -0.14 -0.91 8.85 37.16 0.33 -0.59 16 4 C -0.19 -1.86 8.37 37.16 0.31 -1.55 16 5 O -0.37 -4.14 9.94 -40.32 -0.40 -4.54 16 6 C 0.65 8.45 8.06 54.06 0.44 8.89 16 7 O -0.56 -8.95 11.88 -19.28 -0.23 -9.18 16 8 N -0.71 -7.71 5.37 -65.27 -0.35 -8.06 16 9 C 0.12 1.58 5.08 -4.04 -0.02 1.56 16 10 C 0.13 1.39 2.94 -66.95 -0.20 1.20 16 11 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 12 C -0.13 -0.93 6.23 -24.90 -0.16 -1.09 16 13 C -0.13 -0.91 7.10 -24.47 -0.17 -1.08 16 14 C 0.10 0.97 6.75 -2.41 -0.02 0.95 16 15 N -0.62 -8.34 3.06 -162.87 -0.50 -8.84 16 16 C 0.53 9.60 7.66 -10.98 -0.08 9.52 16 17 O -0.53 -11.69 14.77 5.56 0.08 -11.61 16 18 C -0.12 -2.25 4.57 -27.88 -0.13 -2.37 16 19 C 0.00 0.02 3.33 -27.89 -0.09 -0.07 16 20 C -0.52 -15.02 9.66 -34.44 -0.33 -15.35 16 21 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 22 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 23 N -0.90 -28.07 13.96 55.43 0.77 -27.30 16 24 Si 0.88 22.81 27.47 -169.99 -4.67 18.14 16 25 H -0.28 -7.08 7.11 56.52 0.40 -6.67 16 26 H -0.26 -6.79 6.54 56.52 0.37 -6.42 16 27 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.09 1.05 5.88 -51.93 -0.31 0.75 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.09 1.16 5.88 -51.93 -0.31 0.86 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.40 3.26 8.53 -40.82 -0.35 2.91 16 38 H 0.09 1.51 6.55 -51.93 -0.34 1.17 16 39 H 0.07 0.97 8.01 -51.93 -0.42 0.55 16 40 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.08 0.56 7.76 -51.93 -0.40 0.16 16 42 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.08 0.44 8.14 -51.92 -0.42 0.01 16 44 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.09 0.81 7.48 -51.93 -0.39 0.42 16 46 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 47 H 0.09 1.54 7.96 -51.93 -0.41 1.12 16 48 H 0.02 0.49 7.53 -51.93 -0.39 0.10 16 49 H 0.02 0.64 7.16 -51.93 -0.37 0.26 16 50 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 395.66 15.07 5.96 5.96 Total: -1.00 -35.79 395.66 -8.11 -43.89 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -8.76 Total: -0.27 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -0.01 Total: 1.79 kcal Atomic # 7 Polarization: -44.12 SS G_CDS: -0.08 Total: -44.19 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: -0.55 Total: -25.32 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -4.67 Total: 18.14 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.79 -8.11 -43.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496849816.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.381 kcal (2) G-P(sol) polarization free energy of solvation -35.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds