Wall clock time and date at job start Tue Mar 31 2020 14:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.47002 * 2 1 4 4 C 1.53002 * 109.46789 * 240.00272 * 2 1 3 5 5 O 1.45195 * 109.47295 * 120.00184 * 2 1 3 6 6 C 1.34639 * 116.99859 * 59.99522 * 5 2 1 7 7 O 1.21513 * 120.00235 * 0.02562 * 6 5 2 8 8 N 1.34780 * 119.99860 * 179.97438 * 6 5 2 9 9 C 1.46501 * 119.99719 * 180.02562 * 8 6 5 10 10 C 1.53001 * 109.46872 * 185.00039 * 9 8 6 11 11 H 1.09000 * 110.00030 * 306.33147 * 10 9 8 12 12 C 1.54325 * 109.88310 * 67.42814 * 10 9 8 13 13 C 1.55154 * 102.94161 * 141.61066 * 12 10 9 14 14 C 1.55128 * 101.48687 * 324.33141 * 13 12 10 15 15 N 1.47021 * 109.88148 * 185.23481 * 10 9 8 16 16 C 1.34779 * 125.64723 * 61.60760 * 15 10 9 17 17 O 1.21277 * 120.00374 * 355.07451 * 16 15 10 18 18 C 1.50709 * 119.99937 * 175.07587 * 16 15 10 19 19 C 1.52994 * 109.47094 * 179.97438 * 18 16 15 20 20 C 1.50699 * 109.47061 * 180.02562 * 19 18 16 21 21 H 1.07994 * 120.00118 * 359.97438 * 20 19 18 22 22 C 1.37880 * 119.99856 * 180.02562 * 20 19 18 23 23 N 1.31522 * 119.99829 * 180.02562 * 22 20 19 24 24 Si 1.86796 * 120.00319 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.47152 * 90.00135 * 24 22 20 26 26 H 1.48502 * 109.46967 * 330.00445 * 24 22 20 27 27 H 1.48492 * 109.47376 * 210.00100 * 24 22 20 28 28 H 1.09002 * 109.46964 * 299.99819 * 1 2 3 29 29 H 1.08994 * 109.47154 * 59.99619 * 1 2 3 30 30 H 1.09001 * 109.47300 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46493 * 180.02562 * 3 2 1 32 32 H 1.08994 * 109.47477 * 300.00183 * 3 2 1 33 33 H 1.09002 * 109.47113 * 60.00272 * 3 2 1 34 34 H 1.09001 * 109.46978 * 299.99926 * 4 2 1 35 35 H 1.08994 * 109.47183 * 60.00127 * 4 2 1 36 36 H 1.08997 * 109.46964 * 179.97438 * 4 2 1 37 37 H 0.96999 * 120.00109 * 0.02562 * 8 6 5 38 38 H 1.09006 * 109.47081 * 65.00385 * 9 8 6 39 39 H 1.09000 * 109.47580 * 305.00026 * 9 8 6 40 40 H 1.09001 * 110.71934 * 259.97531 * 12 10 9 41 41 H 1.08996 * 110.71682 * 23.24368 * 12 10 9 42 42 H 1.08996 * 111.00868 * 82.57415 * 13 12 10 43 43 H 1.09010 * 111.00254 * 206.42453 * 13 12 10 44 44 H 1.09005 * 110.49594 * 278.45779 * 14 13 12 45 45 H 1.09000 * 110.34483 * 156.06206 * 14 13 12 46 46 H 1.08997 * 109.46920 * 59.99445 * 18 16 15 47 47 H 1.09004 * 109.47041 * 299.99900 * 18 16 15 48 48 H 1.08997 * 109.47573 * 59.99988 * 19 18 16 49 49 H 1.09004 * 109.47212 * 299.99939 * 19 18 16 50 50 H 0.96999 * 119.99760 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0141 -0.6845 1.1855 6 6 1.6522 -1.9723 1.3382 7 8 0.9515 -2.5097 0.5035 8 7 2.0681 -2.6658 2.4165 9 6 1.6748 -4.0672 2.5825 10 6 2.1700 -4.5789 3.9367 11 1 3.2407 -4.3996 4.0341 12 6 1.4125 -3.8653 5.0763 13 6 1.2049 -4.9967 6.1174 14 6 0.9756 -6.2247 5.1976 15 7 1.8904 -6.0170 4.0604 16 6 2.3843 -6.9846 3.2627 17 8 3.0554 -6.6902 2.2963 18 6 2.1026 -8.4326 3.5715 19 6 2.7727 -9.3182 2.5192 20 6 2.4905 -10.7660 2.8277 21 1 1.8934 -11.0283 3.6884 22 6 2.9957 -11.7559 2.0116 23 7 2.7490 -13.0195 2.2805 24 14 4.0292 -11.3024 0.5232 25 1 5.4603 -11.2397 0.9147 26 1 3.5990 -9.9782 0.0067 27 1 3.8501 -12.3285 -0.5351 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9564 0.8900 34 1 1.6766 -1.7489 -1.2493 35 1 1.6767 -0.2074 -2.1392 36 1 3.1300 -0.7208 -1.2496 37 1 2.6278 -2.2369 3.0827 38 1 2.1158 -4.6652 1.7848 39 1 0.5887 -4.1475 2.5388 40 1 2.0164 -3.0608 5.4961 41 1 0.4538 -3.4853 4.7232 42 1 2.0935 -5.1274 6.7349 43 1 0.3272 -4.8037 6.7344 44 1 -0.0579 -6.2552 4.8523 45 1 1.2278 -7.1450 5.7242 46 1 1.0263 -8.6041 3.5583 47 1 2.4974 -8.6772 4.5577 48 1 3.8491 -9.1467 2.5320 49 1 2.3775 -9.0734 1.5333 50 1 3.1046 -13.7159 1.7066 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496849816.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:02 Heat of formation + Delta-G solvation = -153.494394 kcal Electronic energy + Delta-G solvation = -28475.579109 eV Core-core repulsion = 24501.498453 eV Total energy + Delta-G solvation = -3974.080656 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.92752 -41.25240 -38.98769 -38.18623 -36.03930 -35.57800 -34.91438 -33.47865 -32.42362 -31.04508 -28.39313 -28.30242 -28.05228 -26.68804 -24.42367 -23.20802 -22.81836 -21.70952 -21.23295 -20.04789 -19.34131 -18.90157 -18.08254 -17.73746 -17.33432 -17.23864 -16.40654 -16.27700 -15.98189 -15.84527 -15.55747 -15.35322 -15.00582 -14.75586 -14.53961 -14.46274 -14.15534 -13.79266 -13.76655 -13.41740 -13.34066 -13.17618 -13.01848 -12.93447 -12.88706 -12.87402 -12.53221 -12.37040 -12.24580 -12.01765 -11.99858 -11.96169 -11.79556 -11.61984 -11.42518 -11.41531 -11.19923 -10.81403 -10.79801 -10.29326 -9.74903 -8.33493 -6.35943 1.00637 1.30240 1.32731 1.47990 1.60903 1.69769 1.99459 2.32811 3.02080 3.15018 3.42759 3.53677 3.73400 3.77757 3.77833 3.92981 3.95204 4.07874 4.23865 4.33318 4.40297 4.44505 4.47395 4.58994 4.60814 4.69814 4.74526 4.77742 4.82305 4.83992 4.87080 4.92502 4.95994 5.00457 5.02824 5.14919 5.18664 5.25954 5.29875 5.32500 5.37105 5.41062 5.45400 5.53515 5.58518 6.21584 6.32780 6.43693 6.70008 7.15990 7.28861 7.29328 8.82037 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.013579 B = 0.002692 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.483316 B =10396.985049 C =12037.687764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.124 3.876 3 C -0.134 4.134 4 C -0.183 4.183 5 O -0.364 6.364 6 C 0.645 3.355 7 O -0.597 6.597 8 N -0.690 5.690 9 C 0.136 3.864 10 C 0.126 3.874 11 H 0.081 0.919 12 C -0.118 4.118 13 C -0.120 4.120 14 C 0.085 3.915 15 N -0.616 5.616 16 C 0.526 3.474 17 O -0.580 6.580 18 C -0.109 4.109 19 C 0.005 3.995 20 C -0.527 4.527 21 H 0.053 0.947 22 C 0.016 3.984 23 N -0.941 5.941 24 Si 0.935 3.065 25 H -0.267 1.267 26 H -0.266 1.266 27 H -0.277 1.277 28 H 0.068 0.932 29 H 0.090 0.910 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.102 0.898 33 H 0.075 0.925 34 H 0.054 0.946 35 H 0.092 0.908 36 H 0.060 0.940 37 H 0.420 0.580 38 H 0.042 0.958 39 H 0.067 0.933 40 H 0.111 0.889 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.112 0.888 44 H 0.080 0.920 45 H 0.088 0.912 46 H 0.098 0.902 47 H 0.104 0.896 48 H 0.008 0.992 49 H 0.006 0.994 50 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.490 33.129 6.351 34.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.088 3.912 3 C -0.190 4.190 4 C -0.241 4.241 5 O -0.278 6.278 6 C 0.398 3.602 7 O -0.488 6.488 8 N -0.352 5.352 9 C 0.012 3.988 10 C 0.021 3.979 11 H 0.099 0.901 12 C -0.156 4.156 13 C -0.157 4.157 14 C -0.036 4.036 15 N -0.351 5.351 16 C 0.317 3.683 17 O -0.460 6.460 18 C -0.148 4.148 19 C -0.033 4.033 20 C -0.565 4.565 21 H 0.071 0.929 22 C -0.182 4.182 23 N -0.582 5.582 24 Si 0.760 3.240 25 H -0.192 1.192 26 H -0.191 1.191 27 H -0.203 1.203 28 H 0.087 0.913 29 H 0.109 0.891 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.120 0.880 33 H 0.094 0.906 34 H 0.073 0.927 35 H 0.111 0.889 36 H 0.079 0.921 37 H 0.257 0.743 38 H 0.060 0.940 39 H 0.086 0.914 40 H 0.129 0.871 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.130 0.870 44 H 0.098 0.902 45 H 0.107 0.893 46 H 0.117 0.883 47 H 0.122 0.878 48 H 0.027 0.973 49 H 0.024 0.976 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.426 32.839 5.287 33.555 hybrid contribution 0.706 -0.662 -0.901 1.323 sum -3.720 32.177 4.386 32.687 Atomic orbital electron populations 1.22467 0.93802 1.03489 1.03868 1.22440 0.94752 0.92809 0.81176 1.21877 1.02412 0.90183 1.04577 1.22500 1.01580 1.02021 0.97964 1.86300 1.71547 1.22586 1.47392 1.18251 0.78767 0.80982 0.82174 1.90926 1.42552 1.71159 1.44182 1.44363 1.55375 1.11804 1.23617 1.21538 0.99886 0.78992 0.98418 1.21831 1.00872 0.81021 0.94132 0.90116 1.22793 1.01208 0.98302 0.93313 1.22830 1.04527 0.91879 0.96507 1.22780 0.93412 1.01352 0.86072 1.48614 1.48598 1.05551 1.32289 1.21003 0.77940 0.88317 0.81061 1.90650 1.41483 1.84218 1.29643 1.21457 1.03214 0.88426 1.01734 1.19223 0.95702 0.93380 0.94954 1.21399 1.32609 0.90566 1.11946 0.92894 1.25762 0.97213 0.94825 1.00436 1.70015 1.47341 1.00335 1.40481 0.85874 0.79829 0.78339 0.79942 1.19192 1.19069 1.20269 0.91293 0.89118 0.92461 0.91266 0.87982 0.90624 0.92720 0.88935 0.92139 0.74282 0.93985 0.91431 0.87057 0.89673 0.89643 0.86984 0.90211 0.89329 0.88332 0.87820 0.97322 0.97589 0.92344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.11 8.37 71.98 0.60 -2.51 16 2 C 0.12 2.22 1.13 -10.79 -0.01 2.21 16 3 C -0.13 -1.39 8.85 71.98 0.64 -0.75 16 4 C -0.18 -3.65 8.37 71.98 0.60 -3.05 16 5 O -0.36 -7.91 9.94 -55.49 -0.55 -8.46 16 6 C 0.65 16.94 8.06 129.79 1.05 17.98 16 7 O -0.60 -19.88 11.88 19.80 0.24 -19.65 16 8 N -0.69 -14.78 5.37 -590.83 -3.18 -17.96 16 9 C 0.14 3.51 5.08 86.38 0.44 3.95 16 10 C 0.13 2.57 2.94 45.34 0.13 2.70 16 11 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 12 C -0.12 -1.26 6.23 31.78 0.20 -1.06 16 13 C -0.12 -1.15 7.10 32.06 0.23 -0.92 16 14 C 0.09 1.44 6.75 86.93 0.59 2.03 16 15 N -0.62 -15.89 3.06 -787.61 -2.41 -18.31 16 16 C 0.53 19.37 7.66 87.66 0.67 20.04 16 17 O -0.58 -26.47 14.77 -3.02 -0.04 -26.51 16 18 C -0.11 -4.22 4.57 29.85 0.14 -4.09 16 19 C 0.01 0.28 3.33 29.85 0.10 0.37 16 20 C -0.53 -30.81 9.66 25.60 0.25 -30.56 16 21 H 0.05 3.23 7.99 -2.91 -0.02 3.20 16 22 C 0.02 0.94 5.47 84.65 0.46 1.40 16 23 N -0.94 -59.38 13.96 21.45 0.30 -59.08 16 24 Si 0.94 47.85 27.47 68.60 1.88 49.73 16 25 H -0.27 -13.14 7.11 99.48 0.71 -12.43 16 26 H -0.27 -13.76 6.54 99.48 0.65 -13.11 16 27 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 28 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.06 1.39 5.88 -2.39 -0.01 1.38 16 31 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.05 1.50 5.88 -2.39 -0.01 1.48 16 35 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.06 1.16 8.14 -2.39 -0.02 1.15 16 37 H 0.42 6.08 8.53 -92.71 -0.79 5.29 16 38 H 0.04 1.52 6.55 -2.38 -0.02 1.50 16 39 H 0.07 1.81 8.01 -2.39 -0.02 1.79 16 40 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.08 0.89 7.76 -2.39 -0.02 0.87 16 42 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.11 0.58 8.14 -2.38 -0.02 0.56 16 44 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 45 H 0.09 1.47 7.48 -2.39 -0.02 1.45 16 46 H 0.10 3.54 8.14 -2.39 -0.02 3.52 16 47 H 0.10 3.63 7.96 -2.39 -0.02 3.61 16 48 H 0.01 0.45 7.53 -2.39 -0.02 0.43 16 49 H 0.01 0.31 7.16 -2.39 -0.02 0.29 16 50 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 Total: -1.00 -82.03 395.66 2.39 -79.65 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: 0.07 Total: 12.84 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: 6.08 Total: 7.75 kcal Atomic # 7 Polarization: -90.06 SS G_CDS: -5.29 Total: -95.35 kcal Atomic # 8 Polarization: -54.26 SS G_CDS: -0.36 Total: -54.62 kcal Atomic # 14 Polarization: 47.85 SS G_CDS: 1.88 Total: 49.73 kcal Total: -82.03 2.39 -79.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496849816.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.849 kcal (2) G-P(sol) polarization free energy of solvation -82.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds