Wall clock time and date at job start Tue Mar 31 2020 15:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47221 * 2 1 4 4 H 1.08998 * 109.87234 * 303.83747 * 3 2 1 5 5 C 1.54319 * 109.88485 * 64.85991 * 3 2 1 6 6 H 1.08998 * 110.72080 * 23.22216 * 5 3 2 7 7 C 1.50700 * 110.71971 * 260.12998 * 5 3 2 8 8 O 1.21295 * 120.00209 * 359.97438 * 7 5 3 9 9 N 1.34781 * 120.00204 * 180.02562 * 7 5 3 10 10 C 1.46500 * 119.99538 * 359.97438 * 9 7 5 11 11 C 1.37095 * 120.00128 * 180.02562 * 9 7 5 12 12 H 1.08002 * 119.99853 * 320.69938 * 11 9 7 13 13 C 1.38949 * 120.00179 * 140.70433 * 11 9 7 14 14 N 1.31408 * 119.99876 * 157.95083 * 13 11 9 15 15 Si 1.86800 * 119.99803 * 337.94962 * 13 11 9 16 16 H 1.48500 * 109.47193 * 94.53920 * 15 13 11 17 17 H 1.48497 * 109.46987 * 214.53926 * 15 13 11 18 18 H 1.48495 * 109.47225 * 334.53611 * 15 13 11 19 19 C 1.55161 * 102.94455 * 141.76696 * 5 3 2 20 20 C 1.54914 * 101.57959 * 324.49586 * 19 5 3 21 21 N 1.47029 * 109.88138 * 182.82904 * 3 2 1 22 22 C 1.34770 * 125.64973 * 61.43563 * 21 3 2 23 23 O 1.21512 * 119.99885 * 5.04937 * 22 21 3 24 24 O 1.34634 * 119.99915 * 185.05274 * 22 21 3 25 25 C 1.45203 * 116.99870 * 179.97438 * 24 22 21 26 26 C 1.52995 * 109.47184 * 59.99776 * 25 24 22 27 27 C 1.53004 * 109.46966 * 179.97438 * 25 24 22 28 28 C 1.53002 * 109.47058 * 299.99475 * 25 24 22 29 29 H 1.09005 * 109.46828 * 61.07098 * 1 2 3 30 30 H 1.09002 * 109.47188 * 181.07017 * 1 2 3 31 31 H 1.08998 * 109.47171 * 301.07263 * 1 2 3 32 32 H 1.08997 * 109.47183 * 239.99610 * 2 1 3 33 33 H 1.09004 * 109.46801 * 119.99963 * 2 1 3 34 34 H 1.09001 * 109.47198 * 84.27325 * 10 9 7 35 35 H 1.09004 * 109.46541 * 204.27248 * 10 9 7 36 36 H 1.09001 * 109.47465 * 324.26745 * 10 9 7 37 37 H 0.97011 * 119.99753 * 179.97438 * 14 13 11 38 38 H 1.08998 * 111.00521 * 82.57292 * 19 5 3 39 39 H 1.09000 * 111.00461 * 206.38418 * 19 5 3 40 40 H 1.08996 * 110.36568 * 155.84365 * 20 19 5 41 41 H 1.09000 * 110.36711 * 278.06564 * 20 19 5 42 42 H 1.08998 * 109.47404 * 60.00409 * 26 25 24 43 43 H 1.09006 * 109.47208 * 180.02562 * 26 25 24 44 44 H 1.08995 * 109.47216 * 299.99810 * 26 25 24 45 45 H 1.08993 * 109.47409 * 59.99879 * 27 25 24 46 46 H 1.09006 * 109.46894 * 179.97438 * 27 25 24 47 47 H 1.09004 * 109.47072 * 299.99784 * 27 25 24 48 48 H 1.08995 * 109.47016 * 60.00390 * 28 25 24 49 49 H 1.08996 * 109.46971 * 179.97438 * 28 25 24 50 50 H 1.08993 * 109.47269 * 300.00092 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6254 1.9821 -0.8514 5 6 1.6337 2.1429 1.3137 6 1 1.4540 1.4111 2.1013 7 6 0.4168 3.0065 1.1032 8 8 -0.0979 3.0724 0.0069 9 7 -0.0991 3.7064 2.1330 10 6 0.5229 3.6272 3.4571 11 6 -1.2065 4.4917 1.9417 12 1 -1.3114 5.0650 1.0324 13 6 -2.1939 4.5500 2.9175 14 7 -3.0105 5.5785 2.9653 15 14 -2.3605 3.1665 4.1615 16 1 -1.6065 3.5143 5.3927 17 1 -3.7940 2.9726 4.4971 18 1 -1.8135 1.9127 3.5836 19 6 2.8751 3.0141 1.6414 20 6 4.0304 2.1066 1.1500 21 7 3.5087 1.4535 -0.0682 22 6 4.2521 0.9517 -1.0742 23 8 3.7107 0.5179 -2.0718 24 8 5.5945 0.9310 -0.9736 25 6 6.3310 0.3756 -2.0950 26 6 6.0256 1.1850 -3.3569 27 6 7.8312 0.4374 -1.8006 28 6 5.9124 -1.0804 -2.3092 29 1 -0.3633 0.4971 -0.8995 30 1 -0.3634 -1.0275 0.0192 31 1 -0.3633 0.5304 0.8802 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 1.3505 4.3344 3.5126 35 1 -0.2157 3.8717 4.2206 36 1 0.8964 2.6168 3.6232 37 1 -3.7001 5.6190 3.6464 38 1 2.8518 3.9519 1.0865 39 1 2.9512 3.1985 2.7130 40 1 4.9091 2.7062 0.9125 41 1 4.2744 1.3601 1.9059 42 1 6.3240 2.2222 -3.2043 43 1 6.5782 0.7678 -4.1988 44 1 4.9570 1.1414 -3.5668 45 1 8.0491 -0.1390 -0.9016 46 1 8.3841 0.0200 -2.6422 47 1 8.1292 1.4748 -1.6483 48 1 4.8437 -1.1240 -2.5191 49 1 6.4649 -1.4972 -3.1512 50 1 6.1299 -1.6570 -1.4102 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000497075096.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:02 Heat of formation + Delta-G solvation = -103.510835 kcal Electronic energy + Delta-G solvation = -30174.054351 eV Core-core repulsion = 26202.141145 eV Total energy + Delta-G solvation = -3971.913206 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.92240 -39.71462 -37.84525 -36.32021 -34.92133 -34.22462 -33.03333 -32.27032 -31.29172 -27.93901 -27.58264 -27.51618 -26.54180 -25.63382 -23.93270 -22.54671 -21.91566 -20.59690 -19.24700 -18.69448 -17.70682 -17.13619 -16.88151 -16.38446 -16.00141 -15.68284 -15.10972 -14.73269 -14.44067 -14.39347 -14.17202 -13.86452 -13.57988 -13.41904 -12.95212 -12.73702 -12.68484 -12.62604 -12.43123 -12.30026 -12.10291 -12.04619 -12.03121 -12.01439 -11.70444 -11.51863 -11.37965 -11.32892 -11.31206 -10.99708 -10.80913 -10.60830 -10.45753 -10.41616 -10.27072 -9.98201 -9.91861 -9.09696 -8.67414 -8.47221 -7.75921 -6.43157 -4.01732 2.08772 2.91108 2.99599 3.19178 3.23455 3.63109 3.84598 4.10890 4.29110 4.54963 4.57936 4.59597 4.70508 4.74356 4.96831 5.09197 5.14713 5.26803 5.32536 5.35477 5.38901 5.48532 5.50018 5.54841 5.57785 5.60710 5.64257 5.70408 5.70890 5.79031 5.81559 5.89849 6.04209 6.09152 6.11153 6.14845 6.19252 6.24980 6.28438 6.32018 6.37608 6.50763 6.54286 6.76700 7.50655 7.57882 8.25623 8.40895 8.46471 8.92478 9.27214 9.71752 10.68861 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.025870 B = 0.003169 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.064193 B = 8833.709262 C = 9083.982650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.128 4.128 3 C 0.169 3.831 4 H 0.104 0.896 5 C -0.115 4.115 6 H 0.101 0.899 7 C 0.476 3.524 8 O -0.554 6.554 9 N -0.467 5.467 10 C 0.062 3.938 11 C -0.317 4.317 12 H 0.105 0.895 13 C 0.061 3.939 14 N -0.863 5.863 15 Si 0.876 3.124 16 H -0.275 1.275 17 H -0.287 1.287 18 H -0.264 1.264 19 C -0.125 4.125 20 C 0.106 3.894 21 N -0.600 5.600 22 C 0.668 3.332 23 O -0.565 6.565 24 O -0.364 6.364 25 C 0.136 3.864 26 C -0.184 4.184 27 C -0.139 4.139 28 C -0.183 4.183 29 H 0.065 0.935 30 H 0.048 0.952 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.053 0.947 35 H 0.067 0.933 36 H 0.053 0.947 37 H 0.274 0.726 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.079 0.921 41 H 0.070 0.930 42 H 0.059 0.941 43 H 0.068 0.932 44 H 0.089 0.911 45 H 0.065 0.935 46 H 0.078 0.922 47 H 0.066 0.934 48 H 0.089 0.911 49 H 0.068 0.932 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.837 -10.940 -1.946 22.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.167 4.167 3 C 0.067 3.933 4 H 0.121 0.879 5 C -0.138 4.138 6 H 0.119 0.881 7 C 0.263 3.737 8 O -0.435 6.435 9 N -0.188 5.188 10 C -0.082 4.082 11 C -0.444 4.444 12 H 0.122 0.878 13 C -0.145 4.145 14 N -0.499 5.499 15 Si 0.704 3.296 16 H -0.202 1.202 17 H -0.214 1.214 18 H -0.188 1.188 19 C -0.163 4.163 20 C -0.017 4.017 21 N -0.341 5.341 22 C 0.423 3.577 23 O -0.454 6.454 24 O -0.279 6.279 25 C 0.099 3.901 26 C -0.241 4.241 27 C -0.196 4.196 28 C -0.240 4.240 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.102 0.898 39 H 0.111 0.889 40 H 0.098 0.902 41 H 0.088 0.912 42 H 0.078 0.922 43 H 0.087 0.913 44 H 0.108 0.892 45 H 0.084 0.916 46 H 0.097 0.903 47 H 0.085 0.915 48 H 0.107 0.893 49 H 0.087 0.913 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 19.351 -10.970 -2.831 22.423 hybrid contribution -0.151 -0.661 0.954 1.170 sum 19.199 -11.630 -1.877 22.526 Atomic orbital electron populations 1.21674 0.94172 1.00781 1.03508 1.21849 0.97075 0.95572 1.02163 1.21516 0.75784 0.96839 0.99112 0.87851 1.22383 0.95408 0.98294 0.97692 0.88136 1.19764 0.85962 0.81765 0.86193 1.90576 1.62690 1.65794 1.24442 1.43583 1.26977 1.41140 1.07140 1.22083 0.98636 0.99976 0.87512 1.19018 0.96405 1.21601 1.07355 0.87784 1.25383 0.95415 0.96054 0.97637 1.69762 1.19210 1.26753 1.34132 0.86970 0.77614 0.84160 0.80898 1.20232 1.21365 1.18802 1.22876 0.92382 0.98481 1.02605 1.22391 0.97374 0.95520 0.86393 1.47380 1.06942 1.60200 1.19569 1.17421 0.80463 0.77699 0.82078 1.90890 1.72671 1.52072 1.29744 1.86296 1.17849 1.77762 1.46028 1.22027 0.90609 0.93382 0.84100 1.22520 1.05342 0.99827 0.96429 1.21846 0.91778 1.03238 1.02782 1.22510 1.05036 0.94342 1.02107 0.91614 0.93258 0.92404 0.90837 0.92535 0.92886 0.91439 0.92880 0.91565 0.89773 0.88854 0.90222 0.91166 0.92211 0.91320 0.89201 0.91586 0.90280 0.91521 0.89257 0.91320 0.92317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 9.00 37.16 0.33 -2.04 16 2 C -0.13 -1.99 5.38 -26.73 -0.14 -2.14 16 3 C 0.17 2.82 2.35 -66.95 -0.16 2.66 16 4 H 0.10 2.09 6.80 -51.93 -0.35 1.74 16 5 C -0.12 -1.88 1.26 -89.94 -0.11 -1.99 16 6 H 0.10 1.47 6.93 -51.93 -0.36 1.11 16 7 C 0.48 10.37 5.91 -10.98 -0.06 10.31 16 8 O -0.55 -14.20 14.70 5.54 0.08 -14.11 16 9 N -0.47 -10.70 2.54 -122.19 -0.31 -11.01 16 10 C 0.06 1.12 7.62 59.85 0.46 1.58 16 11 C -0.32 -8.72 9.32 -14.93 -0.14 -8.86 16 12 H 0.10 3.25 7.95 -52.49 -0.42 2.83 16 13 C 0.06 1.65 5.26 -17.47 -0.09 1.56 16 14 N -0.86 -24.55 13.96 55.50 0.77 -23.78 16 15 Si 0.88 19.96 25.15 -169.99 -4.28 15.68 16 16 H -0.28 -5.78 6.66 56.52 0.38 -5.40 16 17 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.26 -5.93 7.11 56.52 0.40 -5.53 16 19 C -0.13 -1.63 5.70 -24.58 -0.14 -1.77 16 20 C 0.11 1.25 6.93 -2.35 -0.02 1.23 16 21 N -0.60 -8.93 3.08 -168.50 -0.52 -9.45 16 22 C 0.67 10.33 7.66 54.05 0.41 10.74 16 23 O -0.56 -9.81 11.06 -19.28 -0.21 -10.02 16 24 O -0.36 -4.83 9.48 -40.31 -0.38 -5.21 16 25 C 0.14 1.46 1.13 -90.62 -0.10 1.36 16 26 C -0.18 -2.00 8.37 37.16 0.31 -1.69 16 27 C -0.14 -1.07 8.85 37.16 0.33 -0.74 16 28 C -0.18 -1.90 8.37 37.16 0.31 -1.59 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 1.05 6.59 -51.93 -0.34 0.71 16 32 H 0.07 1.20 6.92 -51.93 -0.36 0.84 16 33 H 0.06 0.79 8.08 -51.93 -0.42 0.37 16 34 H 0.05 0.83 7.39 -51.93 -0.38 0.44 16 35 H 0.07 1.33 3.77 -51.93 -0.20 1.13 16 36 H 0.05 0.79 6.52 -51.93 -0.34 0.45 16 37 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 38 H 0.08 1.22 8.04 -51.93 -0.42 0.80 16 39 H 0.09 0.99 6.74 -51.93 -0.35 0.64 16 40 H 0.08 0.85 8.11 -51.93 -0.42 0.43 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.09 1.23 5.88 -51.93 -0.31 0.93 16 45 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 47 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 48 H 0.09 1.17 5.88 -51.93 -0.31 0.86 16 49 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 50 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 379.30 15.07 5.72 5.72 Total: -1.00 -32.13 379.30 -6.30 -38.43 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -8.36 Total: 5.14 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: 1.19 Total: 8.62 kcal Atomic # 7 Polarization: -44.19 SS G_CDS: -0.05 Total: -44.24 kcal Atomic # 8 Polarization: -28.83 SS G_CDS: -0.51 Total: -29.35 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -4.28 Total: 15.68 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.13 -6.30 -38.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497075096.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.086 kcal (2) G-P(sol) polarization free energy of solvation -32.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds