Wall clock time and date at job start Tue Mar 31 2020 15:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47221 * 2 1 4 4 H 1.08998 * 109.87234 * 303.83747 * 3 2 1 5 5 C 1.54319 * 109.88485 * 64.85991 * 3 2 1 6 6 H 1.08998 * 110.72080 * 23.22216 * 5 3 2 7 7 C 1.50700 * 110.71971 * 260.12998 * 5 3 2 8 8 O 1.21295 * 120.00209 * 359.97438 * 7 5 3 9 9 N 1.34781 * 120.00204 * 180.02562 * 7 5 3 10 10 C 1.46500 * 119.99538 * 359.97438 * 9 7 5 11 11 C 1.37095 * 120.00128 * 180.02562 * 9 7 5 12 12 H 1.08002 * 119.99853 * 320.69938 * 11 9 7 13 13 C 1.38949 * 120.00179 * 140.70433 * 11 9 7 14 14 N 1.31408 * 119.99876 * 157.95083 * 13 11 9 15 15 Si 1.86800 * 119.99803 * 337.94962 * 13 11 9 16 16 H 1.48500 * 109.47193 * 94.53920 * 15 13 11 17 17 H 1.48497 * 109.46987 * 214.53926 * 15 13 11 18 18 H 1.48495 * 109.47225 * 334.53611 * 15 13 11 19 19 C 1.55161 * 102.94455 * 141.76696 * 5 3 2 20 20 C 1.54914 * 101.57959 * 324.49586 * 19 5 3 21 21 N 1.47029 * 109.88138 * 182.82904 * 3 2 1 22 22 C 1.34770 * 125.64973 * 61.43563 * 21 3 2 23 23 O 1.21512 * 119.99885 * 5.04937 * 22 21 3 24 24 O 1.34634 * 119.99915 * 185.05274 * 22 21 3 25 25 C 1.45203 * 116.99870 * 179.97438 * 24 22 21 26 26 C 1.52995 * 109.47184 * 59.99776 * 25 24 22 27 27 C 1.53004 * 109.46966 * 179.97438 * 25 24 22 28 28 C 1.53002 * 109.47058 * 299.99475 * 25 24 22 29 29 H 1.09005 * 109.46828 * 61.07098 * 1 2 3 30 30 H 1.09002 * 109.47188 * 181.07017 * 1 2 3 31 31 H 1.08998 * 109.47171 * 301.07263 * 1 2 3 32 32 H 1.08997 * 109.47183 * 239.99610 * 2 1 3 33 33 H 1.09004 * 109.46801 * 119.99963 * 2 1 3 34 34 H 1.09001 * 109.47198 * 84.27325 * 10 9 7 35 35 H 1.09004 * 109.46541 * 204.27248 * 10 9 7 36 36 H 1.09001 * 109.47465 * 324.26745 * 10 9 7 37 37 H 0.97011 * 119.99753 * 179.97438 * 14 13 11 38 38 H 1.08998 * 111.00521 * 82.57292 * 19 5 3 39 39 H 1.09000 * 111.00461 * 206.38418 * 19 5 3 40 40 H 1.08996 * 110.36568 * 155.84365 * 20 19 5 41 41 H 1.09000 * 110.36711 * 278.06564 * 20 19 5 42 42 H 1.08998 * 109.47404 * 60.00409 * 26 25 24 43 43 H 1.09006 * 109.47208 * 180.02562 * 26 25 24 44 44 H 1.08995 * 109.47216 * 299.99810 * 26 25 24 45 45 H 1.08993 * 109.47409 * 59.99879 * 27 25 24 46 46 H 1.09006 * 109.46894 * 179.97438 * 27 25 24 47 47 H 1.09004 * 109.47072 * 299.99784 * 27 25 24 48 48 H 1.08995 * 109.47016 * 60.00390 * 28 25 24 49 49 H 1.08996 * 109.46971 * 179.97438 * 28 25 24 50 50 H 1.08993 * 109.47269 * 300.00092 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6254 1.9821 -0.8514 5 6 1.6337 2.1429 1.3137 6 1 1.4540 1.4111 2.1013 7 6 0.4168 3.0065 1.1032 8 8 -0.0979 3.0724 0.0069 9 7 -0.0991 3.7064 2.1330 10 6 0.5229 3.6272 3.4571 11 6 -1.2065 4.4917 1.9417 12 1 -1.3114 5.0650 1.0324 13 6 -2.1939 4.5500 2.9175 14 7 -3.0105 5.5785 2.9653 15 14 -2.3605 3.1665 4.1615 16 1 -1.6065 3.5143 5.3927 17 1 -3.7940 2.9726 4.4971 18 1 -1.8135 1.9127 3.5836 19 6 2.8751 3.0141 1.6414 20 6 4.0304 2.1066 1.1500 21 7 3.5087 1.4535 -0.0682 22 6 4.2521 0.9517 -1.0742 23 8 3.7107 0.5179 -2.0718 24 8 5.5945 0.9310 -0.9736 25 6 6.3310 0.3756 -2.0950 26 6 6.0256 1.1850 -3.3569 27 6 7.8312 0.4374 -1.8006 28 6 5.9124 -1.0804 -2.3092 29 1 -0.3633 0.4971 -0.8995 30 1 -0.3634 -1.0275 0.0192 31 1 -0.3633 0.5304 0.8802 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 1.3505 4.3344 3.5126 35 1 -0.2157 3.8717 4.2206 36 1 0.8964 2.6168 3.6232 37 1 -3.7001 5.6190 3.6464 38 1 2.8518 3.9519 1.0865 39 1 2.9512 3.1985 2.7130 40 1 4.9091 2.7062 0.9125 41 1 4.2744 1.3601 1.9059 42 1 6.3240 2.2222 -3.2043 43 1 6.5782 0.7678 -4.1988 44 1 4.9570 1.1414 -3.5668 45 1 8.0491 -0.1390 -0.9016 46 1 8.3841 0.0200 -2.6422 47 1 8.1292 1.4748 -1.6483 48 1 4.8437 -1.1240 -2.5191 49 1 6.4649 -1.4972 -3.1512 50 1 6.1299 -1.6570 -1.4102 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000497075096.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:01 Heat of formation + Delta-G solvation = -125.069356 kcal Electronic energy + Delta-G solvation = -30174.989199 eV Core-core repulsion = 26202.141145 eV Total energy + Delta-G solvation = -3972.848054 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.07881 -41.08247 -39.23445 -37.49375 -36.72078 -35.22124 -34.32593 -34.09448 -32.62405 -29.18186 -28.35227 -28.26032 -28.16748 -27.23858 -25.42326 -23.75720 -22.98553 -21.87766 -20.37168 -20.18653 -19.11342 -18.86750 -18.11607 -17.56166 -17.40357 -17.18371 -16.23327 -16.03844 -15.88281 -15.73120 -15.25948 -15.16395 -14.82180 -14.51501 -14.45439 -14.22949 -14.10821 -13.89703 -13.54489 -13.47266 -13.30699 -13.14217 -13.03643 -12.90652 -12.83787 -12.76146 -12.61197 -12.52133 -12.46835 -12.27128 -12.22215 -12.10550 -11.88128 -11.78610 -11.57522 -11.35474 -11.04174 -11.01215 -10.33306 -9.76564 -9.64188 -8.49955 -6.13910 1.00856 1.22162 1.35731 1.48071 1.75129 1.95315 2.20203 2.68193 2.87902 2.95089 3.40855 3.53168 3.76520 3.78262 3.82582 3.97035 4.01916 4.15781 4.19058 4.26147 4.32737 4.44264 4.51618 4.52555 4.62837 4.66847 4.69715 4.73232 4.75357 4.78082 4.83579 4.85630 4.90532 4.94697 4.97851 5.03458 5.11448 5.15339 5.17132 5.24830 5.30172 5.36738 5.40452 5.48618 5.55904 6.06426 6.44558 6.59015 6.96740 7.27475 7.31513 7.89284 8.67569 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.025870 B = 0.003169 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.064193 B = 8833.709262 C = 9083.982650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.118 4.118 3 C 0.173 3.827 4 H 0.053 0.947 5 C -0.104 4.104 6 H 0.135 0.865 7 C 0.472 3.528 8 O -0.608 6.608 9 N -0.479 5.479 10 C 0.052 3.948 11 C -0.334 4.334 12 H 0.038 0.962 13 C 0.011 3.989 14 N -0.913 5.913 15 Si 0.951 3.049 16 H -0.234 1.234 17 H -0.294 1.294 18 H -0.255 1.255 19 C -0.119 4.119 20 C 0.108 3.892 21 N -0.604 5.604 22 C 0.664 3.336 23 O -0.593 6.593 24 O -0.360 6.360 25 C 0.123 3.877 26 C -0.182 4.182 27 C -0.132 4.132 28 C -0.178 4.178 29 H 0.032 0.968 30 H 0.074 0.926 31 H 0.042 0.958 32 H 0.061 0.939 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.056 0.944 36 H 0.098 0.902 37 H 0.279 0.721 38 H 0.061 0.939 39 H 0.132 0.868 40 H 0.094 0.906 41 H 0.105 0.895 42 H 0.059 0.941 43 H 0.092 0.908 44 H 0.054 0.946 45 H 0.073 0.927 46 H 0.102 0.898 47 H 0.068 0.932 48 H 0.057 0.943 49 H 0.091 0.909 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.512 -13.639 1.274 27.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.157 4.157 3 C 0.070 3.930 4 H 0.071 0.929 5 C -0.126 4.126 6 H 0.152 0.848 7 C 0.261 3.739 8 O -0.492 6.492 9 N -0.201 5.201 10 C -0.090 4.090 11 C -0.462 4.462 12 H 0.056 0.944 13 C -0.191 4.191 14 N -0.551 5.551 15 Si 0.773 3.227 16 H -0.158 1.158 17 H -0.222 1.222 18 H -0.178 1.178 19 C -0.157 4.157 20 C -0.013 4.013 21 N -0.345 5.345 22 C 0.420 3.580 23 O -0.484 6.484 24 O -0.275 6.275 25 C 0.087 3.913 26 C -0.239 4.239 27 C -0.189 4.189 28 C -0.236 4.236 29 H 0.051 0.949 30 H 0.093 0.907 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.106 0.894 34 H 0.100 0.900 35 H 0.074 0.926 36 H 0.117 0.883 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.150 0.850 40 H 0.112 0.888 41 H 0.123 0.877 42 H 0.078 0.922 43 H 0.111 0.889 44 H 0.073 0.927 45 H 0.092 0.908 46 H 0.121 0.879 47 H 0.087 0.913 48 H 0.076 0.924 49 H 0.109 0.891 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 23.089 -13.653 0.424 26.827 hybrid contribution -1.270 0.262 -0.250 1.321 sum 21.818 -13.391 0.174 25.601 Atomic orbital electron populations 1.21607 0.95206 1.01619 1.01119 1.21764 0.95944 0.94923 1.03021 1.21227 0.77170 0.97007 0.97623 0.92920 1.22294 0.93755 0.98297 0.98247 0.84775 1.20718 0.86888 0.81302 0.84954 1.90559 1.64557 1.67325 1.26728 1.43691 1.26113 1.40757 1.09490 1.22384 0.98897 1.03630 0.84061 1.18586 0.99463 1.22502 1.05636 0.94364 1.26213 0.94382 0.98302 1.00170 1.69888 1.20321 1.28962 1.35910 0.85812 0.77612 0.79986 0.79280 1.15823 1.22151 1.17840 1.22949 0.90859 0.97129 1.04754 1.22633 0.96921 0.96074 0.85638 1.47390 1.06107 1.60348 1.20618 1.17587 0.81227 0.77487 0.81744 1.90890 1.73406 1.53174 1.30905 1.86306 1.16352 1.77762 1.47094 1.22446 0.92212 0.93256 0.83362 1.22486 1.03340 1.00280 0.97786 1.21864 0.89029 1.03844 1.04174 1.22457 1.03249 0.94466 1.03383 0.94853 0.90726 0.93890 0.92011 0.89411 0.90024 0.92571 0.88332 0.91101 0.92055 0.84953 0.88801 0.87665 0.92212 0.88891 0.92682 0.90800 0.87943 0.91258 0.92425 0.89058 0.91572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.57 9.00 71.98 0.65 -3.92 16 2 C -0.12 -3.56 5.38 30.59 0.16 -3.40 16 3 C 0.17 5.72 2.35 45.34 0.11 5.83 16 4 H 0.05 2.29 6.80 -2.39 -0.02 2.28 16 5 C -0.10 -3.16 1.26 -10.35 -0.01 -3.17 16 6 H 0.13 3.24 6.93 -2.39 -0.02 3.23 16 7 C 0.47 20.91 5.91 87.66 0.52 21.43 16 8 O -0.61 -33.42 14.70 -3.08 -0.05 -33.47 16 9 N -0.48 -21.93 2.54 -658.87 -1.67 -23.61 16 10 C 0.05 1.70 7.62 127.77 0.97 2.67 16 11 C -0.33 -19.32 9.32 84.04 0.78 -18.53 16 12 H 0.04 2.64 7.95 -2.91 -0.02 2.62 16 13 C 0.01 0.63 5.26 84.93 0.45 1.07 16 14 N -0.91 -54.10 13.96 21.66 0.30 -53.80 16 15 Si 0.95 40.38 25.15 68.60 1.73 42.11 16 16 H -0.23 -8.40 6.66 99.48 0.66 -7.74 16 17 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 18 H -0.25 -10.37 7.11 99.48 0.71 -9.66 16 19 C -0.12 -2.69 5.70 31.99 0.18 -2.51 16 20 C 0.11 2.12 6.93 86.80 0.60 2.72 16 21 N -0.60 -17.09 3.08 -917.42 -2.82 -19.91 16 22 C 0.66 20.15 7.66 129.79 0.99 21.15 16 23 O -0.59 -21.30 11.06 19.80 0.22 -21.08 16 24 O -0.36 -8.90 9.48 -55.43 -0.53 -9.43 16 25 C 0.12 2.42 1.13 -10.79 -0.01 2.41 16 26 C -0.18 -3.82 8.37 71.98 0.60 -3.21 16 27 C -0.13 -1.57 8.85 71.98 0.64 -0.94 16 28 C -0.18 -3.42 8.37 71.98 0.60 -2.81 16 29 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 30 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.04 1.53 6.59 -2.39 -0.02 1.52 16 32 H 0.06 2.02 6.92 -2.39 -0.02 2.00 16 33 H 0.09 2.12 8.08 -2.38 -0.02 2.10 16 34 H 0.08 2.19 7.39 -2.39 -0.02 2.17 16 35 H 0.06 1.98 3.77 -2.38 -0.01 1.97 16 36 H 0.10 2.31 6.52 -2.39 -0.02 2.30 16 37 H 0.28 15.15 8.31 -92.70 -0.77 14.37 16 38 H 0.06 1.69 8.04 -2.39 -0.02 1.67 16 39 H 0.13 2.00 6.74 -2.39 -0.02 1.98 16 40 H 0.09 1.62 8.11 -2.39 -0.02 1.60 16 41 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 44 H 0.05 1.57 5.88 -2.39 -0.01 1.55 16 45 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.10 0.76 8.14 -2.38 -0.02 0.74 16 47 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 48 H 0.06 1.50 5.88 -2.39 -0.01 1.49 16 49 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 50 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -80.32 379.30 5.29 -75.02 By element: Atomic # 1 Polarization: 24.51 SS G_CDS: 0.88 Total: 25.39 kcal Atomic # 6 Polarization: 11.54 SS G_CDS: 7.24 Total: 18.77 kcal Atomic # 7 Polarization: -93.12 SS G_CDS: -4.19 Total: -97.32 kcal Atomic # 8 Polarization: -63.62 SS G_CDS: -0.35 Total: -63.97 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 1.73 Total: 42.11 kcal Total: -80.32 5.29 -75.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497075096.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.048 kcal (2) G-P(sol) polarization free energy of solvation -80.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds