Wall clock time and date at job start Tue Mar 31 2020 14:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46499 * 120.00471 * 2 1 4 4 C 1.50707 * 109.47001 * 270.00165 * 3 2 1 5 5 H 1.07997 * 119.99544 * 359.97438 * 4 3 2 6 6 C 1.37874 * 119.99726 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99627 * 180.02562 * 6 4 3 8 8 Si 1.86797 * 120.00132 * 359.97438 * 6 4 3 9 9 H 1.48503 * 109.46981 * 90.00393 * 8 6 4 10 10 H 1.48503 * 109.47121 * 209.99851 * 8 6 4 11 11 H 1.48494 * 109.47272 * 330.00414 * 8 6 4 12 12 C 1.34782 * 119.99797 * 179.97438 * 2 1 3 13 13 O 1.21280 * 120.00047 * 179.97438 * 12 2 1 14 14 C 1.50698 * 119.99889 * 0.02562 * 12 2 1 15 15 C 1.53004 * 109.47094 * 179.97438 * 14 12 2 16 16 N 1.46499 * 109.46936 * 179.97438 * 15 14 12 17 17 C 1.34772 * 120.00199 * 269.99514 * 16 15 14 18 18 O 1.21518 * 119.99878 * 5.05743 * 17 16 15 19 19 O 1.34638 * 120.00405 * 185.05436 * 17 16 15 20 20 C 1.45205 * 117.00095 * 180.02562 * 19 17 16 21 21 C 1.52999 * 109.46956 * 60.00075 * 20 19 17 22 22 C 1.53000 * 109.46973 * 180.02562 * 20 19 17 23 23 C 1.52996 * 109.46939 * 300.00160 * 20 19 17 24 24 C 1.46505 * 120.00284 * 89.99931 * 16 15 14 25 25 C 1.52995 * 117.49510 * 2.81911 * 24 16 15 26 26 C 1.53003 * 117.49494 * 294.16057 * 24 16 15 27 27 H 1.08999 * 109.46920 * 270.00177 * 1 2 3 28 28 H 1.09000 * 109.46848 * 29.99653 * 1 2 3 29 29 H 1.09001 * 109.47101 * 150.00090 * 1 2 3 30 30 H 1.09002 * 109.46931 * 29.99762 * 3 2 1 31 31 H 1.09003 * 109.47320 * 150.00081 * 3 2 1 32 32 H 0.97002 * 119.99791 * 179.97438 * 7 6 4 33 33 H 1.09002 * 109.47544 * 59.99811 * 14 12 2 34 34 H 1.09005 * 109.47326 * 299.99671 * 14 12 2 35 35 H 1.08993 * 109.47294 * 59.99529 * 15 14 12 36 36 H 1.09003 * 109.46567 * 299.99300 * 15 14 12 37 37 H 1.08994 * 109.47031 * 60.00398 * 21 20 19 38 38 H 1.09007 * 109.46630 * 179.97438 * 21 20 19 39 39 H 1.08992 * 109.47304 * 299.99838 * 21 20 19 40 40 H 1.08998 * 109.47051 * 59.99888 * 22 20 19 41 41 H 1.09000 * 109.47008 * 180.02562 * 22 20 19 42 42 H 1.08998 * 109.46954 * 299.99962 * 22 20 19 43 43 H 1.09002 * 109.47879 * 60.00117 * 23 20 19 44 44 H 1.09000 * 109.46876 * 180.02562 * 23 20 19 45 45 H 1.09002 * 109.47363 * 299.99708 * 23 20 19 46 46 H 1.09002 * 115.55239 * 148.48819 * 24 16 15 47 47 H 1.09001 * 117.50387 * 359.97438 * 25 24 16 48 48 H 1.09005 * 117.50132 * 145.02591 * 25 24 16 49 49 H 1.08999 * 117.49234 * 214.97477 * 26 24 16 50 50 H 1.08991 * 117.50303 * 359.97438 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7037 -1.4209 5 1 2.0981 1.0957 -2.2417 6 6 3.1262 2.8778 -1.6728 7 7 3.3449 3.2577 -2.9127 8 14 3.7320 3.9297 -0.2530 9 1 5.1054 3.5090 0.1240 10 1 3.7470 5.3563 -0.6651 11 1 2.8254 3.7601 0.9108 12 6 2.1389 -1.1673 0.0005 13 8 3.3517 -1.1673 0.0001 14 6 1.3853 -2.4723 0.0005 15 6 2.3795 -3.6353 0.0005 16 7 1.6469 -4.9040 0.0011 17 6 1.3104 -5.4873 1.1686 18 8 1.5326 -4.9175 2.2187 19 8 0.7281 -6.7012 1.1714 20 6 0.3925 -7.2683 2.4653 21 6 -0.5854 -6.3415 3.1902 22 6 -0.2552 -8.6404 2.2682 23 6 1.6651 -7.4209 3.3008 24 6 1.2802 -5.5387 -1.2673 25 6 1.7479 -4.8618 -2.5571 26 6 0.2714 -4.8090 -2.1566 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6086 2.0284 0.5138 31 1 3.1501 1.1383 0.5138 32 1 3.8212 4.0839 -3.0900 33 1 0.7590 -2.5303 -0.8897 34 1 0.7583 -2.5299 0.8903 35 1 3.0062 -3.5776 0.8904 36 1 3.0061 -3.5776 -0.8896 37 1 -1.4920 -6.2329 2.5951 38 1 -0.8377 -6.7675 4.1614 39 1 -0.1236 -5.3643 3.3307 40 1 0.4419 -9.3004 1.7519 41 1 -0.5075 -9.0659 3.2395 42 1 -1.1617 -8.5320 1.6729 43 1 2.1270 -6.4436 3.4412 44 1 1.4133 -7.8470 4.2719 45 1 2.3619 -8.0812 2.7843 46 1 1.2446 -6.6281 -1.2549 47 1 2.3281 -3.9440 -2.4621 48 1 2.0197 -5.5058 -3.3936 49 1 -0.4274 -5.4184 -2.7296 50 1 -0.1196 -3.8570 -1.7979 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000497171556.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:00 Heat of formation + Delta-G solvation = -80.464054 kcal Electronic energy + Delta-G solvation = -29217.168896 eV Core-core repulsion = 25246.255073 eV Total energy + Delta-G solvation = -3970.913823 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.02966 -39.35463 -38.39902 -36.82926 -34.97924 -34.28043 -33.73735 -32.55957 -30.94172 -28.41172 -27.66443 -27.59284 -26.03598 -24.80217 -23.11984 -22.58155 -22.05361 -21.05487 -19.31204 -18.52055 -18.29183 -16.98007 -16.91415 -16.34777 -16.28701 -15.52974 -15.37919 -15.25592 -14.93318 -14.62775 -14.46017 -14.01531 -13.77339 -13.33187 -13.05985 -12.96375 -12.75120 -12.47201 -12.31863 -12.23908 -12.18552 -12.12897 -12.02911 -11.94221 -11.83340 -11.66093 -11.50679 -11.44514 -11.12395 -10.94925 -10.78082 -10.70599 -10.53244 -10.50975 -10.13912 -10.07979 -9.54794 -9.10895 -8.67881 -8.58709 -7.70876 -6.08852 -4.07528 1.95704 2.67550 3.30046 3.33013 3.36041 3.38299 3.51413 3.65645 3.89279 4.40144 4.47346 4.51576 4.54804 4.66382 4.70764 4.76967 4.98177 5.05395 5.16530 5.20426 5.26162 5.28389 5.28748 5.38145 5.43597 5.50407 5.57231 5.60348 5.62787 5.70359 5.72583 5.77686 5.80483 5.89876 5.98950 6.05465 6.07763 6.13818 6.15831 6.32114 6.36247 6.69974 6.95256 7.24833 7.32600 7.60994 8.22935 8.23546 8.46673 8.91226 8.96865 9.51646 11.04484 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.019908 B = 0.002810 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.150585 B = 9963.048996 C =10592.930885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.597 5.597 3 C 0.214 3.786 4 C -0.528 4.528 5 H 0.074 0.926 6 C 0.072 3.928 7 N -0.898 5.898 8 Si 0.877 3.123 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.512 3.488 13 O -0.542 6.542 14 C -0.158 4.158 15 C 0.143 3.857 16 N -0.568 5.568 17 C 0.656 3.344 18 O -0.561 6.561 19 O -0.361 6.361 20 C 0.135 3.865 21 C -0.183 4.183 22 C -0.139 4.139 23 C -0.184 4.184 24 C 0.073 3.927 25 C -0.182 4.182 26 C -0.192 4.192 27 H 0.045 0.955 28 H 0.076 0.924 29 H 0.059 0.941 30 H 0.030 0.970 31 H 0.037 0.963 32 H 0.264 0.736 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.059 0.941 38 H 0.069 0.931 39 H 0.088 0.912 40 H 0.065 0.935 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.089 0.911 44 H 0.069 0.931 45 H 0.059 0.941 46 H 0.133 0.867 47 H 0.108 0.892 48 H 0.106 0.894 49 H 0.102 0.898 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.367 -23.813 7.578 27.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.329 5.329 3 C 0.094 3.906 4 C -0.566 4.566 5 H 0.092 0.908 6 C -0.130 4.130 7 N -0.536 5.536 8 Si 0.703 3.297 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.191 1.191 12 C 0.298 3.702 13 O -0.420 6.420 14 C -0.199 4.199 15 C 0.022 3.978 16 N -0.306 5.306 17 C 0.411 3.589 18 O -0.450 6.450 19 O -0.276 6.276 20 C 0.098 3.902 21 C -0.241 4.241 22 C -0.197 4.197 23 C -0.241 4.241 24 C -0.032 4.032 25 C -0.220 4.220 26 C -0.231 4.231 27 H 0.064 0.936 28 H 0.095 0.905 29 H 0.077 0.923 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.107 0.893 40 H 0.085 0.915 41 H 0.098 0.902 42 H 0.085 0.915 43 H 0.107 0.893 44 H 0.088 0.912 45 H 0.078 0.922 46 H 0.150 0.850 47 H 0.127 0.873 48 H 0.125 0.875 49 H 0.120 0.880 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -9.596 -23.528 7.876 26.602 hybrid contribution 0.121 0.744 0.509 0.910 sum -9.475 -22.785 8.385 26.062 Atomic orbital electron populations 1.21662 0.80949 1.02903 1.00509 1.47825 1.06283 1.07134 1.71624 1.19682 0.92506 0.80034 0.98392 1.21314 1.36974 1.07125 0.91210 0.90794 1.24857 0.95234 0.97356 0.95589 1.69897 1.41534 1.23561 1.18646 0.86844 0.80166 0.79717 0.82932 1.19871 1.21079 1.19066 1.20118 0.87952 0.84878 0.77204 1.90676 1.13810 1.87289 1.50251 1.22143 1.00009 0.93506 1.04236 1.21319 0.92671 0.78279 1.05498 1.46338 1.58264 1.23228 1.02740 1.17931 0.76991 0.80058 0.83924 1.90926 1.58817 1.65347 1.29908 1.86307 1.73664 1.31810 1.35827 1.22053 0.95311 0.93083 0.79749 1.22510 0.99003 1.02125 1.00420 1.21846 1.01130 0.93720 1.02968 1.22524 0.97088 1.04730 0.99784 1.21770 1.04073 0.96362 0.80989 1.23435 0.97843 1.03743 0.96974 1.23521 0.92896 1.03226 1.03460 0.93619 0.90507 0.92275 0.95231 0.94479 0.92567 0.89107 0.88963 0.88491 0.88458 0.92184 0.91250 0.89288 0.91545 0.90243 0.91500 0.89261 0.91240 0.92233 0.84978 0.87350 0.87541 0.87961 0.88206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.31 10.24 59.85 0.61 1.92 16 2 N -0.60 -12.45 2.86 -182.95 -0.52 -12.97 16 3 C 0.21 5.31 4.23 -5.19 -0.02 5.29 16 4 C -0.53 -15.19 9.94 -34.44 -0.34 -15.53 16 5 H 0.07 2.32 8.06 -52.49 -0.42 1.90 16 6 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 7 N -0.90 -27.70 13.96 55.43 0.77 -26.93 16 8 Si 0.88 21.74 27.47 -169.99 -4.67 17.07 16 9 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 12 C 0.51 10.44 7.67 -10.98 -0.08 10.35 16 13 O -0.54 -13.18 15.56 5.56 0.09 -13.10 16 14 C -0.16 -2.37 4.53 -27.88 -0.13 -2.50 16 15 C 0.14 2.08 4.20 -4.04 -0.02 2.06 16 16 N -0.57 -7.13 2.80 -171.86 -0.48 -7.61 16 17 C 0.66 8.86 7.69 54.05 0.42 9.28 16 18 O -0.56 -8.82 11.51 -19.29 -0.22 -9.04 16 19 O -0.36 -4.18 8.90 -40.32 -0.36 -4.54 16 20 C 0.13 1.28 1.13 -90.62 -0.10 1.18 16 21 C -0.18 -1.74 8.37 37.16 0.31 -1.43 16 22 C -0.14 -0.92 8.85 37.16 0.33 -0.59 16 23 C -0.18 -1.76 8.37 37.16 0.31 -1.45 16 24 C 0.07 0.73 6.16 -67.93 -0.42 0.31 16 25 C -0.18 -1.74 9.74 -26.69 -0.26 -2.00 16 26 C -0.19 -1.76 10.19 -26.69 -0.27 -2.03 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.08 1.23 8.07 -51.93 -0.42 0.82 16 29 H 0.06 0.77 6.44 -51.93 -0.33 0.43 16 30 H 0.03 0.70 7.13 -51.93 -0.37 0.33 16 31 H 0.04 0.98 6.85 -51.93 -0.36 0.63 16 32 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 33 H 0.09 1.21 5.15 -51.93 -0.27 0.94 16 34 H 0.09 1.34 8.11 -51.93 -0.42 0.92 16 35 H 0.10 1.60 7.45 -51.93 -0.39 1.21 16 36 H 0.10 1.40 5.95 -51.93 -0.31 1.10 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.09 1.08 5.88 -51.93 -0.31 0.78 16 40 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.09 1.10 5.88 -51.93 -0.31 0.79 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.13 1.16 7.71 -51.93 -0.40 0.76 16 47 H 0.11 1.23 6.11 -51.93 -0.32 0.92 16 48 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 49 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 50 H 0.10 1.01 6.11 -51.93 -0.32 0.69 16 LS Contribution 395.25 15.07 5.96 5.96 Total: -1.00 -34.75 395.25 -7.53 -42.27 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -8.33 Total: 2.00 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: 0.24 Total: 6.88 kcal Atomic # 7 Polarization: -47.28 SS G_CDS: -0.23 Total: -47.51 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -0.49 Total: -26.67 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.67 Total: 17.07 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.75 -7.53 -42.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497171556.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.190 kcal (2) G-P(sol) polarization free energy of solvation -34.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds