Wall clock time and date at job start Tue Mar 31 2020 14:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46499 * 120.00471 * 2 1 4 4 C 1.50707 * 109.47001 * 270.00165 * 3 2 1 5 5 H 1.07997 * 119.99544 * 359.97438 * 4 3 2 6 6 C 1.37874 * 119.99726 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99627 * 180.02562 * 6 4 3 8 8 Si 1.86797 * 120.00132 * 359.97438 * 6 4 3 9 9 H 1.48503 * 109.46981 * 90.00393 * 8 6 4 10 10 H 1.48503 * 109.47121 * 209.99851 * 8 6 4 11 11 H 1.48494 * 109.47272 * 330.00414 * 8 6 4 12 12 C 1.34782 * 119.99797 * 179.97438 * 2 1 3 13 13 O 1.21280 * 120.00047 * 179.97438 * 12 2 1 14 14 C 1.50698 * 119.99889 * 0.02562 * 12 2 1 15 15 C 1.53004 * 109.47094 * 179.97438 * 14 12 2 16 16 N 1.46499 * 109.46936 * 179.97438 * 15 14 12 17 17 C 1.34772 * 120.00199 * 269.99514 * 16 15 14 18 18 O 1.21518 * 119.99878 * 5.05743 * 17 16 15 19 19 O 1.34638 * 120.00405 * 185.05436 * 17 16 15 20 20 C 1.45205 * 117.00095 * 180.02562 * 19 17 16 21 21 C 1.52999 * 109.46956 * 60.00075 * 20 19 17 22 22 C 1.53000 * 109.46973 * 180.02562 * 20 19 17 23 23 C 1.52996 * 109.46939 * 300.00160 * 20 19 17 24 24 C 1.46505 * 120.00284 * 89.99931 * 16 15 14 25 25 C 1.52995 * 117.49510 * 2.81911 * 24 16 15 26 26 C 1.53003 * 117.49494 * 294.16057 * 24 16 15 27 27 H 1.08999 * 109.46920 * 270.00177 * 1 2 3 28 28 H 1.09000 * 109.46848 * 29.99653 * 1 2 3 29 29 H 1.09001 * 109.47101 * 150.00090 * 1 2 3 30 30 H 1.09002 * 109.46931 * 29.99762 * 3 2 1 31 31 H 1.09003 * 109.47320 * 150.00081 * 3 2 1 32 32 H 0.97002 * 119.99791 * 179.97438 * 7 6 4 33 33 H 1.09002 * 109.47544 * 59.99811 * 14 12 2 34 34 H 1.09005 * 109.47326 * 299.99671 * 14 12 2 35 35 H 1.08993 * 109.47294 * 59.99529 * 15 14 12 36 36 H 1.09003 * 109.46567 * 299.99300 * 15 14 12 37 37 H 1.08994 * 109.47031 * 60.00398 * 21 20 19 38 38 H 1.09007 * 109.46630 * 179.97438 * 21 20 19 39 39 H 1.08992 * 109.47304 * 299.99838 * 21 20 19 40 40 H 1.08998 * 109.47051 * 59.99888 * 22 20 19 41 41 H 1.09000 * 109.47008 * 180.02562 * 22 20 19 42 42 H 1.08998 * 109.46954 * 299.99962 * 22 20 19 43 43 H 1.09002 * 109.47879 * 60.00117 * 23 20 19 44 44 H 1.09000 * 109.46876 * 180.02562 * 23 20 19 45 45 H 1.09002 * 109.47363 * 299.99708 * 23 20 19 46 46 H 1.09002 * 115.55239 * 148.48819 * 24 16 15 47 47 H 1.09001 * 117.50387 * 359.97438 * 25 24 16 48 48 H 1.09005 * 117.50132 * 145.02591 * 25 24 16 49 49 H 1.08999 * 117.49234 * 214.97477 * 26 24 16 50 50 H 1.08991 * 117.50303 * 359.97438 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7037 -1.4209 5 1 2.0981 1.0957 -2.2417 6 6 3.1262 2.8778 -1.6728 7 7 3.3449 3.2577 -2.9127 8 14 3.7320 3.9297 -0.2530 9 1 5.1054 3.5090 0.1240 10 1 3.7470 5.3563 -0.6651 11 1 2.8254 3.7601 0.9108 12 6 2.1389 -1.1673 0.0005 13 8 3.3517 -1.1673 0.0001 14 6 1.3853 -2.4723 0.0005 15 6 2.3795 -3.6353 0.0005 16 7 1.6469 -4.9040 0.0011 17 6 1.3104 -5.4873 1.1686 18 8 1.5326 -4.9175 2.2187 19 8 0.7281 -6.7012 1.1714 20 6 0.3925 -7.2683 2.4653 21 6 -0.5854 -6.3415 3.1902 22 6 -0.2552 -8.6404 2.2682 23 6 1.6651 -7.4209 3.3008 24 6 1.2802 -5.5387 -1.2673 25 6 1.7479 -4.8618 -2.5571 26 6 0.2714 -4.8090 -2.1566 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6086 2.0284 0.5138 31 1 3.1501 1.1383 0.5138 32 1 3.8212 4.0839 -3.0900 33 1 0.7590 -2.5303 -0.8897 34 1 0.7583 -2.5299 0.8903 35 1 3.0062 -3.5776 0.8904 36 1 3.0061 -3.5776 -0.8896 37 1 -1.4920 -6.2329 2.5951 38 1 -0.8377 -6.7675 4.1614 39 1 -0.1236 -5.3643 3.3307 40 1 0.4419 -9.3004 1.7519 41 1 -0.5075 -9.0659 3.2395 42 1 -1.1617 -8.5320 1.6729 43 1 2.1270 -6.4436 3.4412 44 1 1.4133 -7.8470 4.2719 45 1 2.3619 -8.0812 2.7843 46 1 1.2446 -6.6281 -1.2549 47 1 2.3281 -3.9440 -2.4621 48 1 2.0197 -5.5058 -3.3936 49 1 -0.4274 -5.4184 -2.7296 50 1 -0.1196 -3.8570 -1.7979 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000497171556.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:59 Heat of formation + Delta-G solvation = -102.560539 kcal Electronic energy + Delta-G solvation = -29218.127071 eV Core-core repulsion = 25246.255073 eV Total energy + Delta-G solvation = -3971.871998 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.00542 -40.82173 -39.43752 -37.75692 -36.71092 -35.11312 -34.86511 -34.60008 -32.27333 -30.26005 -28.33307 -28.25269 -27.47220 -26.23224 -24.24012 -23.72082 -23.23264 -22.03686 -20.21970 -20.04283 -19.33194 -19.14235 -18.09029 -17.49694 -17.39431 -16.98609 -16.79205 -16.28787 -16.16037 -15.88156 -15.41372 -15.29455 -14.83014 -14.56682 -14.50397 -14.21751 -14.07764 -13.67283 -13.65498 -13.30468 -13.26445 -13.23612 -13.03235 -12.90132 -12.84066 -12.82334 -12.66492 -12.51673 -12.41352 -12.29345 -12.06996 -11.99438 -11.83680 -11.74961 -11.50985 -11.35852 -11.02786 -10.83900 -10.75439 -9.68831 -9.44155 -8.34719 -6.39518 0.99551 1.32324 1.36240 1.44509 1.65709 1.72218 2.28630 2.30593 2.71494 2.88298 2.99643 3.60806 3.72618 3.78742 3.81220 3.83405 3.89368 3.98560 3.99867 4.11220 4.22693 4.42539 4.43663 4.60469 4.63938 4.64764 4.69994 4.77441 4.78567 4.80114 4.85585 4.86865 4.92124 4.92315 4.93701 4.94582 5.13169 5.14434 5.22844 5.28067 5.31783 5.39689 5.44083 5.49389 5.57300 6.22223 6.26671 6.60732 6.62943 7.19304 7.23569 7.35207 8.82000 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.019908 B = 0.002810 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.150585 B = 9963.048996 C =10592.930885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.606 5.606 3 C 0.222 3.778 4 C -0.534 4.534 5 H 0.031 0.969 6 C 0.012 3.988 7 N -0.944 5.944 8 Si 0.946 3.054 9 H -0.277 1.277 10 H -0.274 1.274 11 H -0.240 1.240 12 C 0.503 3.497 13 O -0.591 6.591 14 C -0.136 4.136 15 C 0.152 3.848 16 N -0.566 5.566 17 C 0.653 3.347 18 O -0.588 6.588 19 O -0.358 6.358 20 C 0.124 3.876 21 C -0.180 4.180 22 C -0.133 4.133 23 C -0.181 4.181 24 C 0.064 3.936 25 C -0.185 4.185 26 C -0.183 4.183 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.087 0.913 30 H 0.050 0.950 31 H 0.018 0.982 32 H 0.269 0.731 33 H 0.113 0.887 34 H 0.104 0.896 35 H 0.072 0.928 36 H 0.094 0.906 37 H 0.064 0.936 38 H 0.089 0.911 39 H 0.058 0.942 40 H 0.070 0.930 41 H 0.101 0.899 42 H 0.072 0.928 43 H 0.057 0.943 44 H 0.090 0.910 45 H 0.061 0.939 46 H 0.150 0.850 47 H 0.085 0.915 48 H 0.127 0.873 49 H 0.127 0.873 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.450 -25.479 8.767 29.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.337 5.337 3 C 0.099 3.901 4 C -0.572 4.572 5 H 0.050 0.950 6 C -0.186 4.186 7 N -0.584 5.584 8 Si 0.769 3.231 9 H -0.202 1.202 10 H -0.199 1.199 11 H -0.163 1.163 12 C 0.292 3.708 13 O -0.472 6.472 14 C -0.177 4.177 15 C 0.030 3.970 16 N -0.304 5.304 17 C 0.409 3.591 18 O -0.479 6.479 19 O -0.272 6.272 20 C 0.087 3.913 21 C -0.237 4.237 22 C -0.190 4.190 23 C -0.239 4.239 24 C -0.039 4.039 25 C -0.223 4.223 26 C -0.221 4.221 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.106 0.894 30 H 0.068 0.932 31 H 0.036 0.964 32 H 0.078 0.922 33 H 0.131 0.869 34 H 0.123 0.877 35 H 0.090 0.910 36 H 0.112 0.888 37 H 0.083 0.917 38 H 0.108 0.892 39 H 0.077 0.923 40 H 0.089 0.911 41 H 0.119 0.881 42 H 0.091 0.909 43 H 0.076 0.924 44 H 0.109 0.891 45 H 0.080 0.920 46 H 0.167 0.833 47 H 0.104 0.896 48 H 0.145 0.855 49 H 0.145 0.855 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -11.746 -25.231 9.059 29.269 hybrid contribution 0.740 1.173 0.084 1.390 sum -11.006 -24.058 9.143 27.991 Atomic orbital electron populations 1.21963 0.77663 1.04086 1.02770 1.47953 1.08441 1.05996 1.71338 1.19372 0.92718 0.82414 0.95579 1.21516 1.36782 1.06727 0.92220 0.95017 1.25815 0.95313 0.98924 0.98529 1.70040 1.42706 1.24473 1.21138 0.85744 0.79555 0.77884 0.79953 1.20244 1.19897 1.16335 1.21006 0.87721 0.86302 0.75817 1.90643 1.16164 1.88110 1.52323 1.22014 0.99578 0.90413 1.05690 1.21030 0.92522 0.79325 1.04161 1.46285 1.57899 1.22503 1.03716 1.18060 0.76866 0.80534 0.83639 1.90923 1.59837 1.66154 1.30977 1.86323 1.73135 1.30582 1.37195 1.22432 0.95369 0.94467 0.78999 1.22465 0.98813 1.00713 1.01704 1.21864 1.01067 0.91632 1.04443 1.22486 0.97184 1.03053 1.01129 1.22023 1.04932 0.97103 0.79829 1.23457 0.98189 1.03150 0.97491 1.23597 0.92883 1.02941 1.02721 0.90681 0.91098 0.89440 0.93223 0.96359 0.92239 0.86892 0.87746 0.90992 0.88790 0.91691 0.89186 0.92300 0.91125 0.88090 0.90946 0.92423 0.89095 0.91969 0.83311 0.89647 0.85454 0.85526 0.89086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.27 10.24 127.77 1.31 3.58 16 2 N -0.61 -25.14 2.86 -851.10 -2.43 -27.58 16 3 C 0.22 11.00 4.23 85.64 0.36 11.36 16 4 C -0.53 -31.55 9.94 25.60 0.25 -31.30 16 5 H 0.03 2.08 8.06 -2.91 -0.02 2.05 16 6 C 0.01 0.73 5.47 84.65 0.46 1.20 16 7 N -0.94 -59.70 13.96 21.45 0.30 -59.40 16 8 Si 0.95 44.93 27.47 68.60 1.88 46.82 16 9 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 10 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.24 -10.32 6.54 99.48 0.65 -9.67 16 12 C 0.50 20.79 7.67 87.66 0.67 21.46 16 13 O -0.59 -29.90 15.56 -3.03 -0.05 -29.95 16 14 C -0.14 -4.03 4.53 29.85 0.14 -3.90 16 15 C 0.15 4.50 4.20 86.38 0.36 4.86 16 16 N -0.57 -13.94 2.80 -928.05 -2.60 -16.54 16 17 C 0.65 17.42 7.69 129.79 1.00 18.41 16 18 O -0.59 -18.83 11.51 19.78 0.23 -18.60 16 19 O -0.36 -7.79 8.90 -55.47 -0.49 -8.28 16 20 C 0.12 2.14 1.13 -10.80 -0.01 2.12 16 21 C -0.18 -3.15 8.37 71.98 0.60 -2.55 16 22 C -0.13 -1.35 8.85 71.98 0.64 -0.71 16 23 C -0.18 -3.29 8.37 71.98 0.60 -2.69 16 24 C 0.06 1.18 6.16 44.99 0.28 1.46 16 25 C -0.19 -3.29 9.74 30.62 0.30 -2.99 16 26 C -0.18 -2.92 10.19 30.62 0.31 -2.61 16 27 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.07 2.18 8.07 -2.39 -0.02 2.16 16 29 H 0.09 2.05 6.44 -2.39 -0.02 2.04 16 30 H 0.05 2.27 7.13 -2.39 -0.02 2.25 16 31 H 0.02 0.98 6.85 -2.39 -0.02 0.96 16 32 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 33 H 0.11 2.85 5.15 -2.39 -0.01 2.84 16 34 H 0.10 2.89 8.11 -2.38 -0.02 2.87 16 35 H 0.07 2.50 7.45 -2.39 -0.02 2.48 16 36 H 0.09 2.84 5.95 -2.39 -0.01 2.82 16 37 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 39 H 0.06 1.42 5.88 -2.39 -0.01 1.41 16 40 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.06 1.44 5.88 -2.39 -0.01 1.43 16 44 H 0.09 1.20 8.14 -2.39 -0.02 1.19 16 45 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 46 H 0.15 2.25 7.71 -2.39 -0.02 2.23 16 47 H 0.09 1.95 6.11 -2.39 -0.01 1.94 16 48 H 0.13 1.70 8.14 -2.38 -0.02 1.69 16 49 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 50 H 0.09 1.63 6.11 -2.39 -0.01 1.61 16 Total: -1.00 -79.47 395.25 4.98 -74.49 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: 0.87 Total: 21.34 kcal Atomic # 6 Polarization: 10.44 SS G_CDS: 7.28 Total: 17.71 kcal Atomic # 7 Polarization: -98.79 SS G_CDS: -4.73 Total: -103.52 kcal Atomic # 8 Polarization: -56.52 SS G_CDS: -0.31 Total: -56.83 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.88 Total: 46.82 kcal Total: -79.47 4.98 -74.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497171556.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.075 kcal (2) G-P(sol) polarization free energy of solvation -79.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds