Wall clock time and date at job start Tue Mar 31 2020 15:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34777 * 120.00345 * 2 1 4 4 O 1.21283 * 120.00463 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.99675 * 359.72090 * 3 2 1 6 6 H 1.08998 * 109.47585 * 60.27844 * 5 3 2 7 7 C 1.52998 * 109.47092 * 300.27576 * 5 3 2 8 8 C 1.52998 * 109.47128 * 175.00051 * 7 5 3 9 9 C 1.50702 * 109.47360 * 179.97438 * 8 7 5 10 10 H 1.08008 * 119.99814 * 0.02562 * 9 8 7 11 11 C 1.37873 * 120.00443 * 179.97438 * 9 8 7 12 12 N 1.31515 * 120.00585 * 180.02562 * 11 9 8 13 13 Si 1.86799 * 119.99886 * 0.02562 * 11 9 8 14 14 H 1.48505 * 109.46988 * 90.00083 * 13 11 9 15 15 H 1.48503 * 109.47490 * 209.99821 * 13 11 9 16 16 H 1.48499 * 109.47293 * 330.00364 * 13 11 9 17 17 N 1.46499 * 109.47257 * 180.27849 * 5 3 2 18 18 C 1.34775 * 120.00025 * 275.00294 * 17 5 3 19 19 O 1.21511 * 120.00103 * 359.97438 * 18 17 5 20 20 O 1.34640 * 120.00127 * 179.97438 * 18 17 5 21 21 C 1.45203 * 116.99973 * 179.97438 * 20 18 17 22 22 C 1.52995 * 109.46781 * 60.00034 * 21 20 18 23 23 C 1.53005 * 109.46985 * 179.97438 * 21 20 18 24 24 C 1.52997 * 109.47237 * 300.00052 * 21 20 18 25 25 C 1.46497 * 120.00129 * 179.97438 * 2 1 3 26 26 C 1.53008 * 117.49826 * 8.62314 * 25 2 1 27 27 C 1.53007 * 117.49662 * 300.00174 * 25 2 1 28 28 H 1.08997 * 109.47115 * 90.00316 * 1 2 3 29 29 H 1.08995 * 109.47364 * 210.00706 * 1 2 3 30 30 H 1.09002 * 109.47090 * 330.00257 * 1 2 3 31 31 H 1.09003 * 109.47534 * 295.00334 * 7 5 3 32 32 H 1.09008 * 109.47333 * 55.00271 * 7 5 3 33 33 H 1.09000 * 109.47488 * 299.99836 * 8 7 5 34 34 H 1.09002 * 109.47248 * 60.00473 * 8 7 5 35 35 H 0.96998 * 120.00778 * 180.02562 * 12 11 9 36 36 H 0.97005 * 120.00271 * 94.99464 * 17 5 3 37 37 H 1.09000 * 109.47488 * 59.99862 * 22 21 20 38 38 H 1.09001 * 109.47092 * 179.97438 * 22 21 20 39 39 H 1.09003 * 109.47614 * 299.99594 * 22 21 20 40 40 H 1.08997 * 109.46821 * 60.00027 * 23 21 20 41 41 H 1.08997 * 109.46564 * 179.97438 * 23 21 20 42 42 H 1.09000 * 109.46982 * 299.99953 * 23 21 20 43 43 H 1.09000 * 109.47479 * 59.99510 * 24 21 20 44 44 H 1.08995 * 109.47010 * 180.02562 * 24 21 20 45 45 H 1.09004 * 109.47158 * 299.99953 * 24 21 20 46 46 H 1.09002 * 115.55415 * 154.33614 * 25 2 1 47 47 H 1.09002 * 117.49360 * 0.02562 * 26 25 2 48 48 H 1.08997 * 117.50126 * 145.01935 * 26 25 2 49 49 H 1.09006 * 117.49607 * 214.97267 * 27 25 2 50 50 H 1.08996 * 117.49827 * 0.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 -0.0064 6 1 0.7587 2.5344 0.8833 7 6 0.5059 2.5473 -1.2560 8 6 -0.3516 3.8132 -1.2009 9 6 -1.2175 3.8874 -2.4321 10 1 -1.1621 3.1092 -3.1790 11 6 -2.0812 4.9482 -2.6046 12 7 -2.8372 5.0127 -3.6788 13 14 -2.1776 6.2938 -1.3125 14 1 -1.1971 7.3613 -1.6355 15 1 -3.5471 6.8679 -1.2968 16 1 -1.8651 5.7220 0.0219 17 7 2.3374 3.5858 -0.0118 18 6 2.8527 4.0375 1.1488 19 8 2.5273 3.5215 2.1997 20 8 3.7280 5.0605 1.1438 21 6 4.2416 5.4949 2.4306 22 6 4.9714 4.3327 3.1070 23 6 5.2151 6.6573 2.2251 24 6 3.0802 5.9520 3.3154 25 6 2.1975 -1.2687 0.0006 26 6 1.3886 -2.5515 -0.2024 27 6 1.9630 -2.2193 1.1764 28 1 -0.3633 -0.0001 -1.0276 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.1376 2.5746 -2.1439 32 1 -0.1417 1.6714 -1.2977 33 1 -0.9834 3.7858 -0.3131 34 1 0.2959 4.6891 -1.1593 35 1 -3.4446 5.7592 -3.8003 36 1 2.5970 3.9979 -0.8507 37 1 5.7989 4.0070 2.4767 38 1 5.3574 4.6589 4.0728 39 1 4.2783 3.5043 3.2534 40 1 4.6955 7.4854 1.7430 41 1 5.6002 6.9836 3.1912 42 1 6.0425 6.3312 1.5949 43 1 2.3869 5.1236 3.4617 44 1 3.4658 6.2784 4.2812 45 1 2.5602 6.7800 2.8335 46 1 3.2002 -1.2329 -0.4253 47 1 0.3116 -2.4514 -0.3367 48 1 1.8590 -3.3599 -0.7621 49 1 2.8113 -2.8092 1.5236 50 1 1.2634 -1.9008 1.9492 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000497217940.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:40 Heat of formation + Delta-G solvation = -87.289259 kcal Electronic energy + Delta-G solvation = -29651.772631 eV Core-core repulsion = 25680.562845 eV Total energy + Delta-G solvation = -3971.209786 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.80922 -39.98532 -37.77975 -36.79726 -35.51805 -34.16301 -33.65712 -33.05189 -31.21732 -28.03598 -27.43207 -27.36168 -27.11552 -24.24446 -22.94884 -22.50102 -21.41464 -20.48641 -19.91552 -19.14729 -18.10819 -17.45815 -16.78850 -16.61568 -16.32930 -15.71897 -15.53556 -14.96048 -14.57387 -14.38807 -14.31988 -14.20823 -13.86283 -13.52729 -13.27547 -12.82273 -12.77202 -12.53758 -12.50240 -12.34729 -12.21235 -11.98973 -11.89008 -11.84234 -11.62070 -11.47011 -11.27223 -11.16038 -11.08455 -10.95740 -10.66195 -10.42561 -10.28595 -10.11965 -9.89406 -9.84198 -9.75305 -9.30815 -8.80459 -8.60932 -8.46166 -6.12453 -4.11985 2.26038 2.69899 2.85219 3.19732 3.26372 3.34624 3.38081 3.74453 4.30367 4.38483 4.55050 4.67395 4.71720 4.76247 4.81755 4.84460 4.90185 5.06596 5.15693 5.22088 5.36820 5.42241 5.42878 5.50488 5.50712 5.62198 5.63768 5.65469 5.73985 5.75398 5.86220 5.86762 5.91271 5.94401 5.99184 6.21454 6.28751 6.31270 6.47828 6.55401 6.58957 6.69337 7.10994 7.21736 7.36416 7.63071 7.69147 8.24855 8.42141 8.61257 8.91097 9.49615 11.00490 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.006531 B = 0.005853 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4286.182212 B = 4782.442275 C = 8489.281631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.589 5.589 3 C 0.512 3.488 4 O -0.533 6.533 5 C 0.148 3.852 6 H 0.115 0.885 7 C -0.120 4.120 8 C -0.010 4.010 9 C -0.523 4.523 10 H 0.073 0.927 11 C 0.071 3.929 12 N -0.900 5.900 13 Si 0.876 3.124 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.265 1.265 17 N -0.681 5.681 18 C 0.660 3.340 19 O -0.574 6.574 20 O -0.363 6.363 21 C 0.136 3.864 22 C -0.181 4.181 23 C -0.140 4.140 24 C -0.184 4.184 25 C 0.085 3.915 26 C -0.186 4.186 27 C -0.195 4.195 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.092 0.908 33 H 0.019 0.981 34 H 0.016 0.984 35 H 0.264 0.736 36 H 0.412 0.588 37 H 0.059 0.941 38 H 0.066 0.934 39 H 0.088 0.912 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.066 0.934 43 H 0.088 0.912 44 H 0.067 0.933 45 H 0.060 0.940 46 H 0.130 0.870 47 H 0.102 0.898 48 H 0.102 0.898 49 H 0.099 0.901 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.504 -7.004 11.770 17.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.322 5.322 3 C 0.299 3.701 4 O -0.408 6.408 5 C 0.040 3.960 6 H 0.132 0.868 7 C -0.158 4.158 8 C -0.047 4.047 9 C -0.561 4.561 10 H 0.092 0.908 11 C -0.131 4.131 12 N -0.539 5.539 13 Si 0.703 3.297 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.190 1.190 17 N -0.338 5.338 18 C 0.414 3.586 19 O -0.463 6.463 20 O -0.278 6.278 21 C 0.099 3.901 22 C -0.239 4.239 23 C -0.197 4.197 24 C -0.241 4.241 25 C -0.020 4.020 26 C -0.224 4.224 27 C -0.234 4.234 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.088 0.912 32 H 0.110 0.890 33 H 0.037 0.963 34 H 0.034 0.966 35 H 0.074 0.926 36 H 0.248 0.752 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.107 0.893 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.085 0.915 43 H 0.107 0.893 44 H 0.086 0.914 45 H 0.079 0.921 46 H 0.148 0.852 47 H 0.121 0.879 48 H 0.120 0.880 49 H 0.117 0.883 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 11.901 -7.049 12.241 18.471 hybrid contribution -0.127 0.887 0.282 0.939 sum 11.775 -6.163 12.522 18.260 Atomic orbital electron populations 1.22141 0.78940 1.03532 1.02991 1.47237 1.06819 1.04450 1.73655 1.21335 0.88284 0.85462 0.75034 1.90654 1.13966 1.87201 1.49007 1.21080 0.89014 0.81995 1.03890 0.86781 1.22126 0.97455 1.03048 0.93152 1.19576 0.94816 0.92240 0.98111 1.21040 1.21150 1.09094 1.04848 0.90842 1.24982 0.95085 0.97829 0.95210 1.69899 1.25167 1.31665 1.27122 0.86844 0.77381 0.82553 0.82916 1.20226 1.21349 1.18972 1.44272 1.46734 1.35230 1.07600 1.17941 0.77721 0.78544 0.84426 1.90849 1.64031 1.61137 1.30327 1.86299 1.56856 1.48424 1.36191 1.22017 0.93632 0.94434 0.79981 1.22494 1.01378 0.99573 1.00421 1.21851 0.98471 0.96607 1.02809 1.22523 0.99006 1.03247 0.99340 1.21562 0.97418 0.80441 1.02587 1.23387 1.00714 0.98351 0.99900 1.23386 1.03897 1.03779 0.92290 0.90852 0.91079 0.89938 0.91195 0.89013 0.96289 0.96583 0.92630 0.75168 0.92231 0.91486 0.89318 0.91428 0.90347 0.91506 0.89283 0.91385 0.92090 0.85194 0.87940 0.87971 0.88272 0.88564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.75 8.05 59.84 0.48 1.23 16 2 N -0.59 -8.05 3.21 -173.93 -0.56 -8.61 16 3 C 0.51 8.55 7.11 -10.98 -0.08 8.47 16 4 O -0.53 -10.43 16.03 5.55 0.09 -10.34 16 5 C 0.15 2.45 1.57 -69.08 -0.11 2.35 16 6 H 0.11 1.91 6.84 -51.93 -0.36 1.56 16 7 C -0.12 -2.08 4.35 -26.73 -0.12 -2.20 16 8 C -0.01 -0.22 3.93 -27.88 -0.11 -0.33 16 9 C -0.52 -13.83 9.66 -34.44 -0.33 -14.16 16 10 H 0.07 2.08 7.99 -52.48 -0.42 1.66 16 11 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 12 N -0.90 -26.68 13.96 55.43 0.77 -25.91 16 13 Si 0.88 21.05 27.47 -169.99 -4.67 16.38 16 14 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 15 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 16 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 17 N -0.68 -11.65 4.06 -59.87 -0.24 -11.89 16 18 C 0.66 11.77 7.89 54.05 0.43 12.20 16 19 O -0.57 -10.92 11.54 -19.28 -0.22 -11.15 16 20 O -0.36 -5.88 9.94 -40.32 -0.40 -6.28 16 21 C 0.14 1.80 1.13 -90.62 -0.10 1.70 16 22 C -0.18 -2.34 8.37 37.15 0.31 -2.03 16 23 C -0.14 -1.41 8.85 37.16 0.33 -1.08 16 24 C -0.18 -2.37 8.37 37.16 0.31 -2.05 16 25 C 0.08 1.02 6.21 -67.92 -0.42 0.60 16 26 C -0.19 -1.67 9.72 -26.72 -0.26 -1.93 16 27 C -0.19 -1.92 10.13 -26.72 -0.27 -2.19 16 28 H 0.07 0.81 6.85 -51.93 -0.36 0.46 16 29 H 0.07 0.64 6.33 -51.93 -0.33 0.31 16 30 H 0.08 0.95 6.07 -51.93 -0.32 0.64 16 31 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.09 1.46 4.43 -51.92 -0.23 1.23 16 33 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 34 H 0.02 0.35 7.18 -51.93 -0.37 -0.02 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.41 6.59 8.71 -40.82 -0.36 6.23 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.09 1.39 5.88 -51.93 -0.31 1.08 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.09 1.36 5.88 -51.93 -0.31 1.06 16 44 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 46 H 0.13 1.70 7.67 -51.93 -0.40 1.30 16 47 H 0.10 0.86 6.46 -51.93 -0.34 0.52 16 48 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 49 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 50 H 0.10 0.96 8.12 -51.93 -0.42 0.54 16 LS Contribution 393.12 15.07 5.92 5.92 Total: -1.00 -33.15 393.12 -7.61 -40.76 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -8.27 Total: 8.67 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -0.04 Total: 2.44 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: -0.03 Total: -46.41 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -0.53 Total: -27.77 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.67 Total: 16.38 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.15 -7.61 -40.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497217940.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.525 kcal (2) G-P(sol) polarization free energy of solvation -33.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds