Wall clock time and date at job start Tue Mar 31 2020 15:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34777 * 120.00345 * 2 1 4 4 O 1.21283 * 120.00463 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.99675 * 359.72090 * 3 2 1 6 6 H 1.08998 * 109.47585 * 60.27844 * 5 3 2 7 7 C 1.52998 * 109.47092 * 300.27576 * 5 3 2 8 8 C 1.52998 * 109.47128 * 175.00051 * 7 5 3 9 9 C 1.50702 * 109.47360 * 179.97438 * 8 7 5 10 10 H 1.08008 * 119.99814 * 0.02562 * 9 8 7 11 11 C 1.37873 * 120.00443 * 179.97438 * 9 8 7 12 12 N 1.31515 * 120.00585 * 180.02562 * 11 9 8 13 13 Si 1.86799 * 119.99886 * 0.02562 * 11 9 8 14 14 H 1.48505 * 109.46988 * 90.00083 * 13 11 9 15 15 H 1.48503 * 109.47490 * 209.99821 * 13 11 9 16 16 H 1.48499 * 109.47293 * 330.00364 * 13 11 9 17 17 N 1.46499 * 109.47257 * 180.27849 * 5 3 2 18 18 C 1.34775 * 120.00025 * 275.00294 * 17 5 3 19 19 O 1.21511 * 120.00103 * 359.97438 * 18 17 5 20 20 O 1.34640 * 120.00127 * 179.97438 * 18 17 5 21 21 C 1.45203 * 116.99973 * 179.97438 * 20 18 17 22 22 C 1.52995 * 109.46781 * 60.00034 * 21 20 18 23 23 C 1.53005 * 109.46985 * 179.97438 * 21 20 18 24 24 C 1.52997 * 109.47237 * 300.00052 * 21 20 18 25 25 C 1.46497 * 120.00129 * 179.97438 * 2 1 3 26 26 C 1.53008 * 117.49826 * 8.62314 * 25 2 1 27 27 C 1.53007 * 117.49662 * 300.00174 * 25 2 1 28 28 H 1.08997 * 109.47115 * 90.00316 * 1 2 3 29 29 H 1.08995 * 109.47364 * 210.00706 * 1 2 3 30 30 H 1.09002 * 109.47090 * 330.00257 * 1 2 3 31 31 H 1.09003 * 109.47534 * 295.00334 * 7 5 3 32 32 H 1.09008 * 109.47333 * 55.00271 * 7 5 3 33 33 H 1.09000 * 109.47488 * 299.99836 * 8 7 5 34 34 H 1.09002 * 109.47248 * 60.00473 * 8 7 5 35 35 H 0.96998 * 120.00778 * 180.02562 * 12 11 9 36 36 H 0.97005 * 120.00271 * 94.99464 * 17 5 3 37 37 H 1.09000 * 109.47488 * 59.99862 * 22 21 20 38 38 H 1.09001 * 109.47092 * 179.97438 * 22 21 20 39 39 H 1.09003 * 109.47614 * 299.99594 * 22 21 20 40 40 H 1.08997 * 109.46821 * 60.00027 * 23 21 20 41 41 H 1.08997 * 109.46564 * 179.97438 * 23 21 20 42 42 H 1.09000 * 109.46982 * 299.99953 * 23 21 20 43 43 H 1.09000 * 109.47479 * 59.99510 * 24 21 20 44 44 H 1.08995 * 109.47010 * 180.02562 * 24 21 20 45 45 H 1.09004 * 109.47158 * 299.99953 * 24 21 20 46 46 H 1.09002 * 115.55415 * 154.33614 * 25 2 1 47 47 H 1.09002 * 117.49360 * 0.02562 * 26 25 2 48 48 H 1.08997 * 117.50126 * 145.01935 * 26 25 2 49 49 H 1.09006 * 117.49607 * 214.97267 * 27 25 2 50 50 H 1.08996 * 117.49827 * 0.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 -0.0064 6 1 0.7587 2.5344 0.8833 7 6 0.5059 2.5473 -1.2560 8 6 -0.3516 3.8132 -1.2009 9 6 -1.2175 3.8874 -2.4321 10 1 -1.1621 3.1092 -3.1790 11 6 -2.0812 4.9482 -2.6046 12 7 -2.8372 5.0127 -3.6788 13 14 -2.1776 6.2938 -1.3125 14 1 -1.1971 7.3613 -1.6355 15 1 -3.5471 6.8679 -1.2968 16 1 -1.8651 5.7220 0.0219 17 7 2.3374 3.5858 -0.0118 18 6 2.8527 4.0375 1.1488 19 8 2.5273 3.5215 2.1997 20 8 3.7280 5.0605 1.1438 21 6 4.2416 5.4949 2.4306 22 6 4.9714 4.3327 3.1070 23 6 5.2151 6.6573 2.2251 24 6 3.0802 5.9520 3.3154 25 6 2.1975 -1.2687 0.0006 26 6 1.3886 -2.5515 -0.2024 27 6 1.9630 -2.2193 1.1764 28 1 -0.3633 -0.0001 -1.0276 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.1376 2.5746 -2.1439 32 1 -0.1417 1.6714 -1.2977 33 1 -0.9834 3.7858 -0.3131 34 1 0.2959 4.6891 -1.1593 35 1 -3.4446 5.7592 -3.8003 36 1 2.5970 3.9979 -0.8507 37 1 5.7989 4.0070 2.4767 38 1 5.3574 4.6589 4.0728 39 1 4.2783 3.5043 3.2534 40 1 4.6955 7.4854 1.7430 41 1 5.6002 6.9836 3.1912 42 1 6.0425 6.3312 1.5949 43 1 2.3869 5.1236 3.4617 44 1 3.4658 6.2784 4.2812 45 1 2.5602 6.7800 2.8335 46 1 3.2002 -1.2329 -0.4253 47 1 0.3116 -2.4514 -0.3367 48 1 1.8590 -3.3599 -0.7621 49 1 2.8113 -2.8092 1.5236 50 1 1.2634 -1.9008 1.9492 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000497217940.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:39 Heat of formation + Delta-G solvation = -108.859919 kcal Electronic energy + Delta-G solvation = -29652.708005 eV Core-core repulsion = 25680.562845 eV Total energy + Delta-G solvation = -3972.145160 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.08296 -41.16848 -38.85970 -37.98146 -36.96978 -35.37865 -34.93490 -34.64626 -32.90725 -29.64166 -28.36914 -28.30053 -28.12029 -25.90437 -24.12806 -23.26844 -22.72453 -22.01033 -21.12918 -20.28847 -19.38498 -19.04576 -18.30277 -17.88990 -17.52965 -16.93636 -16.64879 -16.29634 -16.11674 -15.73021 -15.39452 -15.27643 -15.18238 -14.77083 -14.71168 -14.42505 -14.11206 -13.72677 -13.49557 -13.39139 -13.34056 -13.16743 -12.92282 -12.87093 -12.82032 -12.66424 -12.55191 -12.34175 -12.33006 -12.11563 -11.97677 -11.80255 -11.60893 -11.48469 -11.40787 -11.33721 -11.22803 -11.12144 -10.73709 -10.14811 -9.50241 -8.26426 -6.29276 1.05042 1.36431 1.39240 1.42572 1.48876 1.64106 1.98563 2.36820 2.91279 3.09856 3.11953 3.39322 3.74597 3.74682 3.78410 3.79994 3.94258 3.97074 4.02798 4.05066 4.15259 4.44480 4.53627 4.59080 4.60707 4.65807 4.73671 4.75185 4.75400 4.81771 4.82730 4.84766 4.86808 4.98972 5.02049 5.06814 5.16466 5.19713 5.28299 5.34708 5.39123 5.48126 5.50784 5.55713 5.65448 6.21420 6.29570 6.32267 6.78894 7.01219 7.29068 7.35433 8.89695 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.006531 B = 0.005853 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4286.182212 B = 4782.442275 C = 8489.281631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.582 5.582 3 C 0.507 3.493 4 O -0.570 6.570 5 C 0.157 3.843 6 H 0.115 0.885 7 C -0.106 4.106 8 C -0.005 4.005 9 C -0.522 4.522 10 H 0.043 0.957 11 C 0.014 3.986 12 N -0.947 5.947 13 Si 0.936 3.064 14 H -0.272 1.272 15 H -0.286 1.286 16 H -0.250 1.250 17 N -0.685 5.685 18 C 0.655 3.345 19 O -0.590 6.590 20 O -0.371 6.371 21 C 0.121 3.879 22 C -0.176 4.176 23 C -0.135 4.135 24 C -0.180 4.180 25 C 0.047 3.953 26 C -0.159 4.159 27 C -0.186 4.186 28 H 0.077 0.923 29 H 0.099 0.901 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.107 0.893 33 H 0.023 0.977 34 H 0.017 0.983 35 H 0.265 0.735 36 H 0.415 0.585 37 H 0.056 0.944 38 H 0.096 0.904 39 H 0.057 0.943 40 H 0.068 0.932 41 H 0.107 0.893 42 H 0.067 0.933 43 H 0.060 0.940 44 H 0.096 0.904 45 H 0.059 0.941 46 H 0.113 0.887 47 H 0.114 0.886 48 H 0.119 0.881 49 H 0.109 0.891 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.005 -7.173 13.675 19.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.313 5.313 3 C 0.294 3.706 4 O -0.449 6.449 5 C 0.049 3.951 6 H 0.132 0.868 7 C -0.143 4.143 8 C -0.042 4.042 9 C -0.560 4.560 10 H 0.062 0.938 11 C -0.184 4.184 12 N -0.588 5.588 13 Si 0.761 3.239 14 H -0.197 1.197 15 H -0.212 1.212 16 H -0.174 1.174 17 N -0.343 5.343 18 C 0.409 3.591 19 O -0.481 6.481 20 O -0.286 6.286 21 C 0.085 3.915 22 C -0.233 4.233 23 C -0.191 4.191 24 C -0.237 4.237 25 C -0.057 4.057 26 C -0.197 4.197 27 C -0.225 4.225 28 H 0.095 0.905 29 H 0.118 0.882 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.125 0.875 33 H 0.042 0.958 34 H 0.035 0.965 35 H 0.074 0.926 36 H 0.252 0.748 37 H 0.075 0.925 38 H 0.115 0.885 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.126 0.874 42 H 0.087 0.913 43 H 0.079 0.921 44 H 0.115 0.885 45 H 0.078 0.922 46 H 0.131 0.869 47 H 0.132 0.868 48 H 0.138 0.862 49 H 0.128 0.872 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 12.393 -7.250 14.154 20.161 hybrid contribution -0.260 0.843 -0.328 0.941 sum 12.133 -6.407 13.826 19.479 Atomic orbital electron populations 1.22334 0.77436 1.04914 1.03638 1.47276 1.07779 1.04250 1.71975 1.21287 0.87857 0.86262 0.75162 1.90629 1.15338 1.87743 1.51169 1.20936 0.88840 0.82271 1.03090 0.86786 1.21931 0.97155 1.01717 0.93540 1.19473 0.94632 0.94285 0.95853 1.21370 1.21190 1.07821 1.05626 0.93823 1.25805 0.95011 1.00410 0.97155 1.70036 1.26570 1.32826 1.29369 0.85871 0.77385 0.79733 0.80936 1.19749 1.21200 1.17362 1.44352 1.46787 1.35371 1.07746 1.18090 0.77905 0.78818 0.84261 1.90838 1.64650 1.61741 1.30856 1.86315 1.56336 1.47701 1.38203 1.22492 0.94396 0.95546 0.79075 1.22434 1.00413 0.98525 1.01934 1.21888 0.97574 0.95091 1.04591 1.22479 0.98424 1.02015 1.00770 1.21709 0.97617 0.80808 1.05583 1.23495 1.01035 0.96220 0.98907 1.23441 1.04304 1.02397 0.92353 0.90455 0.88219 0.90198 0.91643 0.87468 0.95819 0.96514 0.92602 0.74830 0.92537 0.88513 0.92450 0.91320 0.87412 0.91347 0.92073 0.88505 0.92199 0.86927 0.86773 0.86241 0.87228 0.88435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.21 8.05 127.77 1.03 2.24 16 2 N -0.58 -15.46 3.21 -822.58 -2.64 -18.11 16 3 C 0.51 17.02 7.11 87.66 0.62 17.65 16 4 O -0.57 -22.86 16.03 -3.04 -0.05 -22.91 16 5 C 0.16 5.17 1.57 44.24 0.07 5.24 16 6 H 0.11 3.78 6.84 -2.39 -0.02 3.76 16 7 C -0.11 -3.63 4.35 30.59 0.13 -3.50 16 8 C 0.00 -0.21 3.93 29.85 0.12 -0.09 16 9 C -0.52 -27.77 9.66 25.60 0.25 -27.52 16 10 H 0.04 2.52 7.99 -2.91 -0.02 2.50 16 11 C 0.01 0.75 5.47 84.65 0.46 1.22 16 12 N -0.95 -57.12 13.96 21.45 0.30 -56.82 16 13 Si 0.94 43.06 27.47 68.60 1.88 44.94 16 14 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 15 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 16 H -0.25 -10.78 6.54 99.48 0.65 -10.13 16 17 N -0.68 -23.58 4.06 -573.73 -2.33 -25.91 16 18 C 0.66 23.53 7.89 129.79 1.02 24.56 16 19 O -0.59 -22.75 11.54 19.80 0.23 -22.52 16 20 O -0.37 -11.93 9.94 -55.49 -0.55 -12.49 16 21 C 0.12 3.05 1.13 -10.79 -0.01 3.04 16 22 C -0.18 -4.36 8.37 71.98 0.60 -3.76 16 23 C -0.13 -2.38 8.85 71.98 0.64 -1.74 16 24 C -0.18 -4.37 8.37 71.98 0.60 -3.76 16 25 C 0.05 1.09 6.21 45.00 0.28 1.37 16 26 C -0.16 -2.44 9.72 30.60 0.30 -2.14 16 27 C -0.19 -3.30 10.13 30.60 0.31 -2.99 16 28 H 0.08 1.58 6.85 -2.39 -0.02 1.56 16 29 H 0.10 1.51 6.33 -2.39 -0.02 1.49 16 30 H 0.08 1.73 6.07 -2.39 -0.01 1.71 16 31 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.11 3.34 4.43 -2.38 -0.01 3.33 16 33 H 0.02 0.99 7.20 -2.39 -0.02 0.98 16 34 H 0.02 0.71 7.18 -2.39 -0.02 0.69 16 35 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 36 H 0.42 13.43 8.71 -92.70 -0.81 12.62 16 37 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.10 1.75 8.14 -2.39 -0.02 1.74 16 39 H 0.06 1.81 5.88 -2.39 -0.01 1.79 16 40 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.06 1.85 5.88 -2.39 -0.01 1.83 16 44 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 46 H 0.11 2.99 7.67 -2.39 -0.02 2.97 16 47 H 0.11 1.51 6.46 -2.39 -0.02 1.50 16 48 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 49 H 0.11 1.71 8.14 -2.38 -0.02 1.69 16 50 H 0.10 1.72 8.12 -2.39 -0.02 1.71 16 Total: -1.00 -73.36 393.12 3.34 -70.01 By element: Atomic # 1 Polarization: 33.93 SS G_CDS: 0.08 Total: 34.01 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: 6.42 Total: 9.79 kcal Atomic # 7 Polarization: -96.17 SS G_CDS: -4.67 Total: -100.84 kcal Atomic # 8 Polarization: -57.54 SS G_CDS: -0.37 Total: -57.91 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 1.88 Total: 44.94 kcal Total: -73.36 3.34 -70.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497217940.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.846 kcal (2) G-P(sol) polarization free energy of solvation -73.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds