Wall clock time and date at job start Tue Mar 31 2020 14:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53001 * 109.46916 * 2 1 4 4 C 1.53003 * 109.47125 * 239.99824 * 2 1 3 5 5 O 1.45200 * 109.46971 * 119.99940 * 2 1 3 6 6 C 1.34636 * 117.00071 * 60.00128 * 5 2 1 7 7 O 1.21510 * 120.00175 * 359.97438 * 6 5 2 8 8 N 1.34775 * 119.99763 * 179.97438 * 6 5 2 9 9 C 1.46498 * 120.00201 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.47442 * 179.97438 * 9 8 6 11 11 C 1.53000 * 109.47018 * 180.02562 * 10 9 8 12 12 C 1.53353 * 109.42066 * 295.12667 * 11 10 9 13 13 C 1.53188 * 109.15114 * 178.67793 * 12 11 10 14 14 N 1.46922 * 108.89394 * 54.57762 * 13 12 11 15 15 C 1.34776 * 120.62898 * 126.34399 * 14 13 12 16 16 O 1.21689 * 120.00329 * 354.75880 * 15 14 13 17 17 C 1.46378 * 119.99861 * 174.75957 * 15 14 13 18 18 H 1.07998 * 119.99844 * 5.00940 * 17 15 14 19 19 C 1.40048 * 119.99682 * 185.00494 * 17 15 14 20 20 N 1.30671 * 120.00214 * 0.02562 * 19 17 15 21 21 Si 1.86801 * 119.99758 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47420 * 60.00085 * 21 19 17 23 23 H 1.48505 * 109.47398 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47020 * 300.00290 * 21 19 17 25 25 C 1.46923 * 118.74131 * 306.32015 * 14 13 12 26 26 C 1.53045 * 109.45960 * 175.00286 * 11 10 9 27 27 H 1.08990 * 109.47044 * 299.99806 * 1 2 3 28 28 H 1.08998 * 109.46843 * 60.00316 * 1 2 3 29 29 H 1.09002 * 109.46686 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46969 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.46752 * 299.99900 * 3 2 1 32 32 H 1.08992 * 109.47192 * 59.99454 * 3 2 1 33 33 H 1.08996 * 109.46783 * 300.00294 * 4 2 1 34 34 H 1.08997 * 109.46768 * 59.99734 * 4 2 1 35 35 H 1.08996 * 109.46870 * 179.97438 * 4 2 1 36 36 H 0.97001 * 120.00076 * 0.02562 * 8 6 5 37 37 H 1.08997 * 109.47042 * 59.99819 * 9 8 6 38 38 H 1.08996 * 109.47023 * 300.00094 * 9 8 6 39 39 H 1.08997 * 109.47032 * 59.99957 * 10 9 8 40 40 H 1.08996 * 109.47206 * 300.00127 * 10 9 8 41 41 H 1.08995 * 109.46257 * 55.02793 * 11 10 9 42 42 H 1.09005 * 109.68105 * 58.70819 * 12 11 10 43 43 H 1.09003 * 109.47310 * 298.51792 * 12 11 10 44 44 H 1.08999 * 109.58478 * 294.72229 * 13 12 11 45 45 H 1.08999 * 109.58399 * 174.44034 * 13 12 11 46 46 H 0.96998 * 119.99786 * 180.02562 * 20 19 17 47 47 H 1.08995 * 109.58992 * 173.39368 * 25 14 13 48 48 H 1.08999 * 109.59224 * 293.68124 * 25 14 13 49 49 H 1.09003 * 109.49640 * 61.43151 * 26 11 10 50 50 H 1.09000 * 109.51983 * 301.35243 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0141 -0.6845 1.1856 6 6 1.6523 -1.9723 1.3384 7 8 0.9510 -2.5095 0.5041 8 7 2.0681 -2.6656 2.4167 9 6 1.6741 -4.0667 2.5833 10 6 2.2753 -4.6151 3.8789 11 6 1.8643 -6.0786 4.0525 12 6 0.3445 -6.1626 4.2392 13 6 -0.0641 -7.6324 4.3793 14 7 0.7136 -8.2407 5.4672 15 6 0.0948 -8.8818 6.4784 16 8 -1.1201 -8.8794 6.5475 17 6 0.8841 -9.5811 7.4936 18 1 1.9620 -9.5161 7.4788 19 6 0.2415 -10.3343 8.4840 20 7 -1.0628 -10.4133 8.5016 21 14 1.2487 -11.2262 9.7800 22 1 2.0548 -10.2411 10.5449 23 1 0.3380 -11.9466 10.7057 24 1 2.1543 -12.2003 9.1193 25 6 2.1788 -8.1375 5.4316 26 6 2.5656 -6.6628 5.2810 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.6767 -1.7489 -1.2492 34 1 1.6767 -0.2075 -2.1392 35 1 3.1301 -0.7209 -1.2494 36 1 2.6277 -2.2367 3.0829 37 1 2.0398 -4.6500 1.7382 38 1 0.5873 -4.1355 2.6291 39 1 1.9100 -4.0319 4.7243 40 1 3.3621 -4.5463 3.8328 41 1 2.1524 -6.6442 3.1666 42 1 -0.1562 -5.7265 3.3747 43 1 0.0582 -5.6181 5.1390 44 1 0.1389 -8.1585 3.4465 45 1 -1.1274 -7.6955 4.6105 46 1 -1.5078 -10.9347 9.1878 47 1 2.5955 -8.5316 6.3584 48 1 2.5649 -8.7068 4.5862 49 1 2.2585 -6.1134 6.1709 50 1 3.6454 -6.5808 5.1573 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000497258655.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:46 Heat of formation + Delta-G solvation = -137.165934 kcal Electronic energy + Delta-G solvation = -28026.808169 eV Core-core repulsion = 24053.435568 eV Total energy + Delta-G solvation = -3973.372601 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.95568 -38.92314 -37.75844 -36.42972 -35.08383 -34.26437 -32.80185 -32.41215 -30.55512 -29.13405 -27.74145 -27.67755 -26.30383 -24.85571 -22.74237 -22.48785 -21.56862 -20.48836 -19.99187 -18.85062 -18.30962 -16.91136 -16.55640 -16.48814 -15.68699 -15.40618 -15.14337 -14.81037 -14.52843 -14.40571 -14.22190 -13.93741 -13.77008 -13.56487 -13.21071 -12.85165 -12.71769 -12.53412 -12.41823 -12.22079 -12.21231 -11.95873 -11.90180 -11.65996 -11.61079 -11.57158 -11.22559 -11.13073 -10.92582 -10.70093 -10.64159 -10.57520 -10.45740 -10.26989 -10.22929 -9.91904 -9.72768 -9.32998 -8.84867 -7.56688 -7.18733 -6.19168 -4.64239 1.96343 2.66402 3.14756 3.19938 3.21404 3.91448 4.08747 4.39363 4.43663 4.54934 4.58006 4.60973 4.65907 4.82272 5.02057 5.13229 5.21175 5.22301 5.27008 5.35740 5.36056 5.43969 5.53847 5.54300 5.65300 5.66368 5.71943 5.73349 5.84714 5.89261 5.90615 5.98641 6.01217 6.07341 6.18116 6.23558 6.28817 6.32870 6.43219 6.52312 6.55633 6.63674 6.83810 7.22130 7.45618 7.66132 8.15019 8.19420 8.37394 9.02331 9.45882 10.58625 10.77361 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.035356 B = 0.001898 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.744919 B =14749.904168 C =15063.280816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.136 3.864 3 C -0.141 4.141 4 C -0.183 4.183 5 O -0.367 6.367 6 C 0.647 3.353 7 O -0.568 6.568 8 N -0.710 5.710 9 C 0.134 3.866 10 C -0.126 4.126 11 C -0.079 4.079 12 C -0.129 4.129 13 C 0.119 3.881 14 N -0.642 5.642 15 C 0.559 3.441 16 O -0.579 6.579 17 C -0.545 4.545 18 H 0.072 0.928 19 C 0.087 3.913 20 N -0.768 5.768 21 Si 0.906 3.094 22 H -0.268 1.268 23 H -0.281 1.281 24 H -0.268 1.268 25 C 0.122 3.878 26 C -0.128 4.128 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.405 0.595 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.040 0.960 45 H 0.083 0.917 46 H 0.269 0.731 47 H 0.092 0.908 48 H 0.041 0.959 49 H 0.065 0.935 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.117 19.999 -14.569 26.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.198 4.198 4 C -0.241 4.241 5 O -0.282 6.282 6 C 0.400 3.600 7 O -0.457 6.457 8 N -0.369 5.369 9 C 0.012 3.988 10 C -0.164 4.164 11 C -0.098 4.098 12 C -0.168 4.168 13 C -0.005 4.005 14 N -0.381 5.381 15 C 0.365 3.635 16 O -0.462 6.462 17 C -0.582 4.582 18 H 0.090 0.910 19 C -0.132 4.132 20 N -0.397 5.397 21 Si 0.731 3.269 22 H -0.193 1.193 23 H -0.206 1.206 24 H -0.193 1.193 25 C -0.002 4.002 26 C -0.166 4.166 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.107 0.893 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.107 0.893 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.240 0.760 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.059 0.941 45 H 0.101 0.899 46 H 0.079 0.921 47 H 0.110 0.890 48 H 0.059 0.941 49 H 0.083 0.917 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.884 19.699 -14.902 26.249 hybrid contribution 0.843 -0.155 0.828 1.192 sum 9.727 19.544 -14.074 25.974 Atomic orbital electron populations 1.22521 0.93931 1.05200 1.02474 1.22064 0.94432 0.91469 0.82113 1.21860 1.02202 0.92578 1.03132 1.22516 1.01487 1.03604 0.96459 1.86293 1.71648 1.23789 1.46495 1.18118 0.78990 0.80452 0.82407 1.90910 1.41009 1.70438 1.43325 1.44845 1.55515 1.13055 1.23523 1.21533 1.00768 0.77983 0.98513 1.21884 1.00827 0.97374 0.96277 1.21089 0.96201 0.93513 0.98985 1.22106 0.94700 0.98527 1.01469 1.21107 0.98225 0.90948 0.90224 1.48163 1.04687 1.60037 1.25186 1.18235 0.87427 0.77810 0.79993 1.90588 1.14558 1.64454 1.76598 1.20952 0.93537 1.31874 1.11836 0.90979 1.25731 0.94710 0.95267 0.97527 1.70006 1.08670 1.31230 1.29796 0.86465 0.80120 0.79838 0.80518 1.19269 1.20572 1.19274 1.21389 0.83049 0.93758 1.02046 1.21989 0.98936 0.98074 0.97624 0.92157 0.91154 0.89285 0.91505 0.90152 0.91460 0.89313 0.91161 0.92224 0.76048 0.91160 0.90642 0.91048 0.91235 0.91081 0.91881 0.91793 0.94144 0.89904 0.92056 0.89002 0.94097 0.91665 0.91957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.62 8.37 37.16 0.31 -1.31 16 2 C 0.14 1.19 1.13 -90.61 -0.10 1.09 16 3 C -0.14 -0.85 8.85 37.16 0.33 -0.52 16 4 C -0.18 -1.56 8.37 37.16 0.31 -1.25 16 5 O -0.37 -3.88 9.94 -40.31 -0.40 -4.28 16 6 C 0.65 7.66 8.06 54.05 0.44 8.09 16 7 O -0.57 -8.05 11.88 -19.28 -0.23 -8.28 16 8 N -0.71 -6.92 5.56 -65.28 -0.36 -7.28 16 9 C 0.13 1.36 5.43 -4.04 -0.02 1.34 16 10 C -0.13 -1.20 4.80 -26.73 -0.13 -1.33 16 11 C -0.08 -0.98 2.15 -90.41 -0.19 -1.17 16 12 C -0.13 -1.94 5.16 -26.45 -0.14 -2.08 16 13 C 0.12 2.31 6.43 -3.71 -0.02 2.29 16 14 N -0.64 -14.42 2.97 -174.44 -0.52 -14.94 16 15 C 0.56 15.89 7.62 -12.99 -0.10 15.79 16 16 O -0.58 -18.81 14.45 5.20 0.08 -18.73 16 17 C -0.55 -15.16 8.86 -35.63 -0.32 -15.47 16 18 H 0.07 1.81 5.69 -52.49 -0.30 1.51 16 19 C 0.09 2.42 5.50 -17.37 -0.10 2.32 16 20 N -0.77 -22.99 11.84 55.55 0.66 -22.33 16 21 Si 0.91 19.91 29.56 -169.99 -5.02 14.88 16 22 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 23 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 24 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 25 C 0.12 2.19 6.31 -3.71 -0.02 2.16 16 26 C -0.13 -1.78 5.36 -26.61 -0.14 -1.92 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.09 1.01 5.88 -51.93 -0.31 0.71 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.09 0.98 5.88 -51.93 -0.31 0.67 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.41 3.04 8.58 -40.82 -0.35 2.69 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.86 6.54 -51.93 -0.34 0.53 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.06 0.83 6.52 -51.93 -0.34 0.49 16 43 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.08 1.84 6.99 -51.93 -0.36 1.48 16 46 H 0.27 7.31 8.29 -40.82 -0.34 6.98 16 47 H 0.09 1.75 5.37 -51.93 -0.28 1.47 16 48 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 49 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 50 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 389.95 15.07 5.88 5.88 Total: -1.00 -35.20 389.95 -8.30 -43.51 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -8.48 Total: 3.55 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: 0.10 Total: 8.02 kcal Atomic # 7 Polarization: -44.33 SS G_CDS: -0.22 Total: -44.55 kcal Atomic # 8 Polarization: -30.73 SS G_CDS: -0.55 Total: -31.29 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.20 -8.30 -43.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497258655.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.659 kcal (2) G-P(sol) polarization free energy of solvation -35.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds