Wall clock time and date at job start Tue Mar 31 2020 14:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53001 * 109.46916 * 2 1 4 4 C 1.53003 * 109.47125 * 239.99824 * 2 1 3 5 5 O 1.45200 * 109.46971 * 119.99940 * 2 1 3 6 6 C 1.34636 * 117.00071 * 60.00128 * 5 2 1 7 7 O 1.21510 * 120.00175 * 359.97438 * 6 5 2 8 8 N 1.34775 * 119.99763 * 179.97438 * 6 5 2 9 9 C 1.46498 * 120.00201 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.47442 * 179.97438 * 9 8 6 11 11 C 1.53000 * 109.47018 * 180.02562 * 10 9 8 12 12 C 1.53353 * 109.42066 * 295.12667 * 11 10 9 13 13 C 1.53188 * 109.15114 * 178.67793 * 12 11 10 14 14 N 1.46922 * 108.89394 * 54.57762 * 13 12 11 15 15 C 1.34776 * 120.62898 * 126.34399 * 14 13 12 16 16 O 1.21689 * 120.00329 * 354.75880 * 15 14 13 17 17 C 1.46378 * 119.99861 * 174.75957 * 15 14 13 18 18 H 1.07998 * 119.99844 * 5.00940 * 17 15 14 19 19 C 1.40048 * 119.99682 * 185.00494 * 17 15 14 20 20 N 1.30671 * 120.00214 * 0.02562 * 19 17 15 21 21 Si 1.86801 * 119.99758 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47420 * 60.00085 * 21 19 17 23 23 H 1.48505 * 109.47398 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47020 * 300.00290 * 21 19 17 25 25 C 1.46923 * 118.74131 * 306.32015 * 14 13 12 26 26 C 1.53045 * 109.45960 * 175.00286 * 11 10 9 27 27 H 1.08990 * 109.47044 * 299.99806 * 1 2 3 28 28 H 1.08998 * 109.46843 * 60.00316 * 1 2 3 29 29 H 1.09002 * 109.46686 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46969 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.46752 * 299.99900 * 3 2 1 32 32 H 1.08992 * 109.47192 * 59.99454 * 3 2 1 33 33 H 1.08996 * 109.46783 * 300.00294 * 4 2 1 34 34 H 1.08997 * 109.46768 * 59.99734 * 4 2 1 35 35 H 1.08996 * 109.46870 * 179.97438 * 4 2 1 36 36 H 0.97001 * 120.00076 * 0.02562 * 8 6 5 37 37 H 1.08997 * 109.47042 * 59.99819 * 9 8 6 38 38 H 1.08996 * 109.47023 * 300.00094 * 9 8 6 39 39 H 1.08997 * 109.47032 * 59.99957 * 10 9 8 40 40 H 1.08996 * 109.47206 * 300.00127 * 10 9 8 41 41 H 1.08995 * 109.46257 * 55.02793 * 11 10 9 42 42 H 1.09005 * 109.68105 * 58.70819 * 12 11 10 43 43 H 1.09003 * 109.47310 * 298.51792 * 12 11 10 44 44 H 1.08999 * 109.58478 * 294.72229 * 13 12 11 45 45 H 1.08999 * 109.58399 * 174.44034 * 13 12 11 46 46 H 0.96998 * 119.99786 * 180.02562 * 20 19 17 47 47 H 1.08995 * 109.58992 * 173.39368 * 25 14 13 48 48 H 1.08999 * 109.59224 * 293.68124 * 25 14 13 49 49 H 1.09003 * 109.49640 * 61.43151 * 26 11 10 50 50 H 1.09000 * 109.51983 * 301.35243 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0141 -0.6845 1.1856 6 6 1.6523 -1.9723 1.3384 7 8 0.9510 -2.5095 0.5041 8 7 2.0681 -2.6656 2.4167 9 6 1.6741 -4.0667 2.5833 10 6 2.2753 -4.6151 3.8789 11 6 1.8643 -6.0786 4.0525 12 6 0.3445 -6.1626 4.2392 13 6 -0.0641 -7.6324 4.3793 14 7 0.7136 -8.2407 5.4672 15 6 0.0948 -8.8818 6.4784 16 8 -1.1201 -8.8794 6.5475 17 6 0.8841 -9.5811 7.4936 18 1 1.9620 -9.5161 7.4788 19 6 0.2415 -10.3343 8.4840 20 7 -1.0628 -10.4133 8.5016 21 14 1.2487 -11.2262 9.7800 22 1 2.0548 -10.2411 10.5449 23 1 0.3380 -11.9466 10.7057 24 1 2.1543 -12.2003 9.1193 25 6 2.1788 -8.1375 5.4316 26 6 2.5656 -6.6628 5.2810 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.6767 -1.7489 -1.2492 34 1 1.6767 -0.2075 -2.1392 35 1 3.1301 -0.7209 -1.2494 36 1 2.6277 -2.2367 3.0829 37 1 2.0398 -4.6500 1.7382 38 1 0.5873 -4.1355 2.6291 39 1 1.9100 -4.0319 4.7243 40 1 3.3621 -4.5463 3.8328 41 1 2.1524 -6.6442 3.1666 42 1 -0.1562 -5.7265 3.3747 43 1 0.0582 -5.6181 5.1390 44 1 0.1389 -8.1585 3.4465 45 1 -1.1274 -7.6955 4.6105 46 1 -1.5078 -10.9347 9.1878 47 1 2.5955 -8.5316 6.3584 48 1 2.5649 -8.7068 4.5862 49 1 2.2585 -6.1134 6.1709 50 1 3.6454 -6.5808 5.1573 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000497258655.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:45 Heat of formation + Delta-G solvation = -161.887304 kcal Electronic energy + Delta-G solvation = -28027.880168 eV Core-core repulsion = 24053.435568 eV Total energy + Delta-G solvation = -3974.444600 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.77789 -40.40384 -38.76924 -37.94048 -36.23986 -35.09506 -34.66709 -33.98399 -31.99289 -30.35562 -28.35064 -28.28612 -28.26655 -26.07008 -24.16230 -23.57457 -22.56906 -21.78030 -20.96746 -20.40488 -19.13038 -18.44964 -17.74127 -17.58705 -17.33289 -16.34978 -16.19989 -15.99540 -15.89396 -15.60538 -15.44259 -15.27892 -14.77802 -14.56343 -14.47088 -14.19859 -14.00637 -13.52543 -13.34328 -13.32544 -13.11823 -13.06483 -12.89121 -12.84656 -12.72090 -12.63382 -12.54258 -12.41739 -12.30732 -12.12635 -12.11115 -11.94052 -11.69014 -11.37459 -11.25887 -11.13038 -11.07677 -10.90478 -10.17336 -9.75229 -9.03077 -8.27434 -6.82167 1.19824 1.40142 1.43857 1.55265 1.77992 2.24854 2.47745 2.91495 3.18836 3.59998 3.74969 3.77080 3.81584 3.86117 3.96494 3.98327 4.20416 4.31903 4.36999 4.49513 4.53614 4.59697 4.62926 4.63945 4.70439 4.76860 4.78098 4.85664 4.89728 4.93579 4.97665 4.99270 5.03300 5.12579 5.17216 5.20086 5.26985 5.27406 5.29683 5.31610 5.39568 5.42101 5.59980 5.61160 5.82641 6.18137 6.43658 6.46101 6.89277 7.36850 7.47132 8.49537 8.69424 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.035356 B = 0.001898 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.744919 B =14749.904168 C =15063.280816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.124 3.876 3 C -0.135 4.135 4 C -0.179 4.179 5 O -0.369 6.369 6 C 0.642 3.358 7 O -0.596 6.596 8 N -0.700 5.700 9 C 0.138 3.862 10 C -0.110 4.110 11 C -0.072 4.072 12 C -0.119 4.119 13 C 0.114 3.886 14 N -0.645 5.645 15 C 0.539 3.461 16 O -0.638 6.638 17 C -0.569 4.569 18 H 0.096 0.904 19 C 0.026 3.974 20 N -0.825 5.825 21 Si 0.996 3.004 22 H -0.252 1.252 23 H -0.277 1.277 24 H -0.252 1.252 25 C 0.113 3.887 26 C -0.118 4.118 27 H 0.060 0.940 28 H 0.090 0.910 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.101 0.899 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.089 0.911 35 H 0.063 0.937 36 H 0.418 0.582 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.073 0.927 40 H 0.097 0.903 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.045 0.955 44 H 0.058 0.942 45 H 0.041 0.959 46 H 0.273 0.727 47 H 0.078 0.922 48 H 0.061 0.939 49 H 0.050 0.950 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.641 21.492 -15.004 29.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.088 3.912 3 C -0.192 4.192 4 C -0.236 4.236 5 O -0.284 6.284 6 C 0.395 3.605 7 O -0.487 6.487 8 N -0.360 5.360 9 C 0.016 3.984 10 C -0.148 4.148 11 C -0.091 4.091 12 C -0.157 4.157 13 C -0.009 4.009 14 N -0.382 5.382 15 C 0.345 3.655 16 O -0.526 6.526 17 C -0.606 4.606 18 H 0.114 0.886 19 C -0.189 4.189 20 N -0.455 5.455 21 Si 0.815 3.185 22 H -0.176 1.176 23 H -0.202 1.202 24 H -0.176 1.176 25 C -0.009 4.009 26 C -0.156 4.156 27 H 0.079 0.921 28 H 0.109 0.891 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.119 0.881 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.108 0.892 35 H 0.083 0.917 36 H 0.254 0.746 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.091 0.909 40 H 0.115 0.885 41 H 0.103 0.897 42 H 0.101 0.899 43 H 0.063 0.937 44 H 0.076 0.924 45 H 0.060 0.940 46 H 0.083 0.917 47 H 0.097 0.903 48 H 0.079 0.921 49 H 0.069 0.931 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 12.480 21.242 -15.369 29.038 hybrid contribution -0.285 -0.580 0.848 1.066 sum 12.196 20.663 -14.522 28.046 Atomic orbital electron populations 1.22482 0.94280 1.03544 1.03516 1.22408 0.94386 0.92820 0.81600 1.21879 1.02513 0.90552 1.04276 1.22467 1.01708 1.02149 0.97326 1.86306 1.71575 1.23090 1.47396 1.18339 0.78809 0.80862 0.82514 1.90905 1.42272 1.71094 1.44452 1.44752 1.55183 1.12835 1.23237 1.21428 0.99859 0.78269 0.98849 1.21717 1.02384 0.94910 0.95788 1.21032 0.93455 0.95815 0.98819 1.22006 0.97475 0.94748 1.01466 1.21255 0.95790 0.94158 0.89740 1.48061 1.06976 1.58868 1.24294 1.18699 0.87015 0.78300 0.81527 1.90533 1.16943 1.66673 1.78419 1.21503 0.94831 1.31998 1.12220 0.88623 1.27038 0.95896 0.95807 1.00109 1.70203 1.11382 1.32657 1.31261 0.85097 0.78133 0.78520 0.76723 1.17611 1.20213 1.17630 1.21666 0.79908 0.97155 1.02211 1.21917 1.01410 0.94641 0.97670 0.92096 0.89144 0.92184 0.91007 0.88063 0.91274 0.92107 0.89205 0.91750 0.74565 0.91242 0.92277 0.90867 0.88465 0.89703 0.89905 0.93655 0.92397 0.94022 0.91733 0.90339 0.92102 0.93109 0.87955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.05 8.37 71.99 0.60 -2.45 16 2 C 0.12 2.00 1.13 -10.79 -0.01 1.98 16 3 C -0.14 -1.30 8.85 71.98 0.64 -0.66 16 4 C -0.18 -2.84 8.37 71.98 0.60 -2.24 16 5 O -0.37 -7.34 9.94 -55.45 -0.55 -7.89 16 6 C 0.64 14.64 8.06 129.79 1.05 15.68 16 7 O -0.60 -16.97 11.88 19.81 0.24 -16.73 16 8 N -0.70 -12.34 5.56 -590.87 -3.29 -15.63 16 9 C 0.14 2.52 5.43 86.38 0.47 2.99 16 10 C -0.11 -1.74 4.80 30.59 0.15 -1.59 16 11 C -0.07 -1.59 2.15 -10.66 -0.02 -1.62 16 12 C -0.12 -3.51 5.16 30.78 0.16 -3.36 16 13 C 0.11 4.57 6.43 86.36 0.56 5.12 16 14 N -0.65 -29.62 2.97 -824.02 -2.45 -32.07 16 15 C 0.54 31.95 7.62 86.36 0.66 32.60 16 16 O -0.64 -44.13 14.45 -4.31 -0.06 -44.19 16 17 C -0.57 -32.26 8.86 24.83 0.22 -32.04 16 18 H 0.10 4.77 5.69 -2.91 -0.02 4.76 16 19 C 0.03 1.47 5.50 85.30 0.47 1.94 16 20 N -0.83 -51.41 11.84 21.84 0.26 -51.15 16 21 Si 1.00 40.88 29.56 68.60 2.03 42.90 16 22 H -0.25 -9.64 7.11 99.48 0.71 -8.94 16 23 H -0.28 -11.10 7.11 99.48 0.71 -10.39 16 24 H -0.25 -9.66 7.11 99.48 0.71 -8.95 16 25 C 0.11 3.91 6.31 86.36 0.55 4.45 16 26 C -0.12 -2.96 5.36 30.67 0.16 -2.79 16 27 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.06 1.39 5.88 -2.39 -0.01 1.38 16 30 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.06 1.34 5.88 -2.39 -0.01 1.32 16 34 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.42 5.18 8.58 -92.71 -0.80 4.39 16 37 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.06 1.29 6.54 -2.39 -0.02 1.27 16 39 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.08 2.13 6.52 -2.38 -0.02 2.12 16 43 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 45 H 0.04 1.99 6.99 -2.39 -0.02 1.97 16 46 H 0.27 15.45 8.29 -92.71 -0.77 14.68 16 47 H 0.08 2.90 5.37 -2.39 -0.01 2.88 16 48 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 49 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 50 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -83.17 389.95 2.55 -80.62 By element: Atomic # 1 Polarization: 25.98 SS G_CDS: 0.14 Total: 26.12 kcal Atomic # 6 Polarization: 11.78 SS G_CDS: 6.24 Total: 18.02 kcal Atomic # 7 Polarization: -93.37 SS G_CDS: -5.48 Total: -98.85 kcal Atomic # 8 Polarization: -68.43 SS G_CDS: -0.38 Total: -68.81 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.90 kcal Total: -83.17 2.55 -80.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497258655.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.272 kcal (2) G-P(sol) polarization free energy of solvation -83.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds