Wall clock time and date at job start Tue Mar 31 2020 15:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53003 * 109.47025 * 2 1 4 4 H 1.09000 * 109.46607 * 55.29972 * 3 2 1 5 5 C 1.50703 * 109.46620 * 175.29678 * 3 2 1 6 6 H 1.07999 * 119.99518 * 120.00216 * 5 3 2 7 7 C 1.37878 * 119.99932 * 299.99801 * 5 3 2 8 8 N 1.31506 * 120.00148 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99651 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47390 * 59.99922 * 9 7 5 11 11 H 1.48497 * 109.46937 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46994 * 300.00080 * 9 7 5 13 13 N 1.46898 * 109.47080 * 295.29851 * 3 2 1 14 14 C 1.46900 * 111.00038 * 147.21342 * 13 3 2 15 15 H 1.08996 * 109.46634 * 328.08977 * 14 13 3 16 16 C 1.52999 * 109.47169 * 88.08559 * 14 13 3 17 17 C 1.50697 * 109.46990 * 208.08863 * 14 13 3 18 18 O 1.21281 * 119.99911 * 352.24042 * 17 14 13 19 19 N 1.34772 * 120.00023 * 172.24712 * 17 14 13 20 20 C 1.46924 * 120.63453 * 185.27103 * 19 17 14 21 21 C 1.53623 * 108.54478 * 126.36227 * 20 19 17 22 22 C 1.53048 * 109.24027 * 54.86023 * 21 20 19 23 23 C 1.50701 * 109.44939 * 178.49839 * 22 21 20 24 24 O 1.20818 * 120.00050 * 120.06320 * 23 22 21 25 25 O 1.34237 * 119.99789 * 300.05909 * 23 22 21 26 26 C 1.45198 * 116.99921 * 180.02562 * 25 23 22 27 27 C 1.53041 * 109.53580 * 298.51070 * 22 21 20 28 28 C 1.46934 * 120.62839 * 5.54588 * 19 17 14 29 29 H 1.09000 * 109.46936 * 185.43186 * 1 2 3 30 30 H 1.08996 * 109.47032 * 305.43740 * 1 2 3 31 31 H 1.09000 * 109.46841 * 65.43441 * 1 2 3 32 32 H 1.08994 * 109.47018 * 240.00141 * 2 1 3 33 33 H 1.08996 * 109.46992 * 120.00316 * 2 1 3 34 34 H 0.96999 * 120.00147 * 179.97438 * 8 7 5 35 35 H 1.00900 * 111.00362 * 23.25294 * 13 3 2 36 36 H 1.09003 * 109.47117 * 53.16700 * 16 14 13 37 37 H 1.08997 * 109.47201 * 173.16963 * 16 14 13 38 38 H 1.08996 * 109.47504 * 293.16807 * 16 14 13 39 39 H 1.08998 * 109.59061 * 246.20130 * 20 19 17 40 40 H 1.09006 * 109.58188 * 6.62429 * 20 19 17 41 41 H 1.08998 * 109.63995 * 294.86841 * 21 20 19 42 42 H 1.09000 * 109.43378 * 174.72925 * 21 20 19 43 43 H 1.08999 * 109.45990 * 58.53101 * 22 21 20 44 44 H 1.08997 * 109.46746 * 180.02562 * 26 25 23 45 45 H 1.08998 * 109.46969 * 300.00020 * 26 25 23 46 46 H 1.08994 * 109.47326 * 60.00007 * 26 25 23 47 47 H 1.08997 * 109.49667 * 301.40693 * 27 22 21 48 48 H 1.09000 * 109.51901 * 181.33468 * 27 22 21 49 49 H 1.08993 * 109.58748 * 353.38085 * 28 19 17 50 50 H 1.09001 * 109.57967 * 113.66129 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6095 1.9800 0.8449 5 6 3.5426 1.4440 0.1165 6 1 4.1440 1.8899 -0.6618 7 6 4.1493 0.8762 1.2167 8 7 3.4169 0.3329 2.1642 9 14 6.0117 0.8787 1.3614 10 1 6.5063 2.2789 1.3617 11 1 6.4107 0.2120 2.6269 12 1 6.5986 0.1467 0.2103 13 7 1.6453 2.1015 -1.2521 14 6 1.3879 3.5315 -1.0361 15 1 0.9955 3.6821 -0.0304 16 6 2.6925 4.3145 -1.1970 17 6 0.3815 4.0190 -2.0463 18 8 0.0295 3.2920 -2.9510 19 7 -0.1273 5.2628 -1.9444 20 6 -1.1925 5.7125 -2.8509 21 6 -2.3626 6.2395 -2.0063 22 6 -1.8496 7.3222 -1.0539 23 6 -3.0005 7.8686 -0.2489 24 8 -2.9879 7.7854 0.9564 25 8 -4.0395 8.4478 -0.8709 26 6 -5.1121 8.9520 -0.0322 27 6 -0.8068 6.7205 -0.1092 28 6 0.3770 6.1970 -0.9285 29 1 -0.3633 -1.0231 0.0973 30 1 -0.3633 0.5958 0.8373 31 1 -0.3633 0.4272 -0.9347 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.8437 -0.0670 2.9381 35 1 0.8429 1.6475 -1.6623 36 1 3.1475 4.0691 -2.1567 37 1 2.4821 5.3832 -1.1573 38 1 3.3774 4.0490 -0.3918 39 1 -0.8144 6.5079 -3.4930 40 1 -1.5294 4.8754 -3.4624 41 1 -2.7950 5.4224 -1.4290 42 1 -3.1222 6.6631 -2.6634 43 1 -1.3952 8.1277 -1.6308 44 1 -5.8866 9.3935 -0.6593 45 1 -5.5372 8.1318 0.5463 46 1 -4.7180 9.7088 0.6459 47 1 -1.2538 5.8988 0.4503 48 1 -0.4590 7.4861 0.5844 49 1 1.0760 5.6798 -0.2714 50 1 0.8827 7.0298 -1.4171 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565169731.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:27 Heat of formation + Delta-G solvation = -121.416028 kcal Electronic energy + Delta-G solvation = -29307.228855 eV Core-core repulsion = 25334.539221 eV Total energy + Delta-G solvation = -3972.689634 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.08448 -40.07126 -37.68422 -36.69659 -36.12803 -33.71000 -32.79831 -31.66536 -31.10713 -28.70247 -28.23136 -26.53319 -26.18839 -23.74476 -23.34726 -22.65162 -21.55035 -20.42479 -19.54114 -18.96912 -17.95534 -17.22512 -16.81480 -16.44986 -16.19962 -15.98374 -15.40141 -14.69063 -14.57404 -14.49164 -14.15416 -14.04178 -13.66681 -13.53821 -13.30934 -12.92125 -12.78372 -12.64296 -12.46957 -12.24659 -12.16091 -11.99676 -11.68360 -11.46950 -11.22026 -11.21277 -11.14202 -11.09960 -11.00480 -10.82250 -10.79287 -10.61111 -10.59400 -9.89484 -9.82486 -9.61388 -9.17765 -9.07860 -8.68717 -8.30735 -7.25020 -5.93889 -3.97281 1.87568 2.34805 2.87652 3.00337 3.35463 3.40283 3.43633 4.18192 4.33177 4.41628 4.46639 4.72110 4.74053 4.79664 4.83291 4.87004 5.02783 5.12341 5.16176 5.20843 5.35148 5.37291 5.38874 5.51123 5.60052 5.70199 5.76187 5.77855 5.87695 5.96322 6.06172 6.19599 6.20768 6.21920 6.44843 6.48110 6.55362 6.87444 6.93219 7.07615 7.19927 7.37608 7.41526 7.50898 7.81199 7.96049 8.27552 8.38156 8.47053 8.78115 9.10236 9.67155 11.11526 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.017170 B = 0.002847 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.367057 B = 9833.536192 C =10020.458946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.129 4.129 3 C 0.219 3.781 4 H 0.006 0.994 5 C -0.489 4.489 6 H 0.064 0.936 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.894 3.106 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.278 1.278 13 N -0.669 5.669 14 C 0.079 3.921 15 H 0.060 0.940 16 C -0.139 4.139 17 C 0.517 3.483 18 O -0.532 6.532 19 N -0.620 5.620 20 C 0.114 3.886 21 C -0.125 4.125 22 C -0.078 4.078 23 C 0.464 3.536 24 O -0.503 6.503 25 O -0.359 6.359 26 C 0.034 3.966 27 C -0.122 4.122 28 C 0.102 3.898 29 H 0.038 0.962 30 H 0.041 0.959 31 H 0.036 0.964 32 H 0.042 0.958 33 H 0.101 0.899 34 H 0.259 0.741 35 H 0.333 0.667 36 H 0.061 0.939 37 H 0.047 0.953 38 H 0.084 0.916 39 H 0.069 0.931 40 H 0.098 0.902 41 H 0.073 0.927 42 H 0.088 0.912 43 H 0.112 0.888 44 H 0.101 0.899 45 H 0.063 0.937 46 H 0.062 0.938 47 H 0.079 0.921 48 H 0.086 0.914 49 H 0.107 0.893 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.608 17.841 -5.962 23.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.168 4.168 3 C 0.112 3.888 4 H 0.023 0.977 5 C -0.528 4.528 6 H 0.082 0.918 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.722 3.278 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.204 1.204 13 N -0.304 5.304 14 C -0.034 4.034 15 H 0.078 0.922 16 C -0.197 4.197 17 C 0.306 3.694 18 O -0.407 6.407 19 N -0.356 5.356 20 C -0.009 4.009 21 C -0.164 4.164 22 C -0.097 4.097 23 C 0.307 3.693 24 O -0.390 6.390 25 O -0.276 6.276 26 C -0.059 4.059 27 C -0.161 4.161 28 C -0.021 4.021 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.119 0.881 34 H 0.069 0.931 35 H 0.154 0.846 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.103 0.897 39 H 0.087 0.913 40 H 0.116 0.884 41 H 0.092 0.908 42 H 0.106 0.894 43 H 0.130 0.870 44 H 0.119 0.881 45 H 0.081 0.919 46 H 0.081 0.919 47 H 0.098 0.902 48 H 0.105 0.895 49 H 0.125 0.875 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.158 17.404 -6.110 22.658 hybrid contribution -0.107 0.123 0.934 0.948 sum -13.266 17.527 -5.176 22.583 Atomic orbital electron populations 1.21894 0.99634 0.99767 0.99598 1.21837 0.91215 1.00508 1.03216 1.19307 0.95593 0.89898 0.83986 0.97674 1.21215 0.91035 1.36058 1.04451 0.91800 1.24967 0.98000 0.95725 0.95917 1.69858 1.34814 1.39278 1.09784 0.86629 0.85951 0.78098 0.77083 1.20429 1.21586 1.20359 1.60729 1.40866 0.98560 1.30289 1.21473 0.93747 0.93278 0.94929 0.92211 1.21960 0.96802 0.96522 1.04417 1.21365 0.81407 0.80323 0.86348 1.90640 1.60646 1.55110 1.34353 1.48161 1.38637 1.13656 1.35106 1.21597 0.86758 1.00572 0.91929 1.22022 0.98713 0.97542 0.98096 1.21122 0.91848 0.99485 0.97244 1.23868 0.83134 0.74646 0.87691 1.90688 1.78753 1.53658 1.15854 1.86507 1.29883 1.69385 1.41820 1.23272 0.87850 0.99349 0.95461 1.21908 0.94984 1.01899 0.97261 1.22010 0.95899 0.93463 0.90702 0.94306 0.94033 0.94501 0.93930 0.88123 0.93071 0.84581 0.91993 0.93414 0.89742 0.91252 0.88412 0.90781 0.89379 0.87017 0.88069 0.91859 0.91893 0.90196 0.89502 0.87502 0.90872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.07 9.67 37.16 0.36 -2.71 16 2 C -0.13 -3.09 5.30 -26.73 -0.14 -3.23 16 3 C 0.22 5.39 2.05 -68.86 -0.14 5.25 16 4 H 0.01 0.15 7.25 -51.93 -0.38 -0.23 16 5 C -0.49 -13.08 7.64 -34.44 -0.26 -13.34 16 6 H 0.06 1.73 7.56 -52.49 -0.40 1.33 16 7 C 0.05 1.47 5.29 -17.82 -0.09 1.37 16 8 N -0.90 -25.16 11.29 55.43 0.63 -24.53 16 9 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 N -0.67 -14.69 6.02 -102.17 -0.62 -15.31 16 14 C 0.08 1.46 2.20 -68.87 -0.15 1.31 16 15 H 0.06 1.11 6.70 -51.93 -0.35 0.76 16 16 C -0.14 -2.34 8.61 37.16 0.32 -2.02 16 17 C 0.52 8.69 7.02 -10.99 -0.08 8.61 16 18 O -0.53 -10.58 15.14 5.56 0.08 -10.49 16 19 N -0.62 -7.75 2.97 -172.50 -0.51 -8.26 16 20 C 0.11 1.16 6.44 -3.49 -0.02 1.13 16 21 C -0.13 -1.07 5.31 -26.38 -0.14 -1.21 16 22 C -0.08 -0.65 2.59 -91.73 -0.24 -0.89 16 23 C 0.46 4.72 7.26 36.01 0.26 4.98 16 24 O -0.50 -6.61 15.73 -18.74 -0.29 -6.91 16 25 O -0.36 -3.18 10.44 -39.28 -0.41 -3.59 16 26 C 0.03 0.22 10.56 101.05 1.07 1.29 16 27 C -0.12 -1.16 4.65 -26.61 -0.12 -1.29 16 28 C 0.10 1.02 5.05 -3.71 -0.02 1.00 16 29 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.04 0.71 6.64 -51.93 -0.34 0.36 16 32 H 0.04 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.10 2.67 5.96 -51.93 -0.31 2.36 16 34 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 35 H 0.33 7.34 5.24 -39.29 -0.21 7.14 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.05 0.62 5.37 -51.93 -0.28 0.34 16 38 H 0.08 1.60 7.06 -51.93 -0.37 1.24 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.10 1.15 7.04 -51.93 -0.37 0.79 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.09 0.60 8.08 -51.93 -0.42 0.19 16 43 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 45 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 46 H 0.06 0.40 8.13 -51.93 -0.42 -0.02 16 47 H 0.08 0.92 8.13 -51.93 -0.42 0.50 16 48 H 0.09 0.77 8.07 -51.93 -0.42 0.35 16 49 H 0.11 1.18 4.55 -51.93 -0.24 0.94 16 50 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 387.57 15.07 5.84 5.84 Total: -1.00 -32.03 387.57 -7.98 -40.01 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -8.27 Total: 6.83 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: 0.60 Total: 0.26 kcal Atomic # 7 Polarization: -47.60 SS G_CDS: -0.50 Total: -48.10 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: -0.62 Total: -20.99 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.03 -7.98 -40.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565169731.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.405 kcal (2) G-P(sol) polarization free energy of solvation -32.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds