Wall clock time and date at job start Tue Mar 31 2020 15:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53003 * 109.47025 * 2 1 4 4 H 1.09000 * 109.46607 * 55.29972 * 3 2 1 5 5 C 1.50703 * 109.46620 * 175.29678 * 3 2 1 6 6 H 1.07999 * 119.99518 * 120.00216 * 5 3 2 7 7 C 1.37878 * 119.99932 * 299.99801 * 5 3 2 8 8 N 1.31506 * 120.00148 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99651 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47390 * 59.99922 * 9 7 5 11 11 H 1.48497 * 109.46937 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46994 * 300.00080 * 9 7 5 13 13 N 1.46898 * 109.47080 * 295.29851 * 3 2 1 14 14 C 1.46900 * 111.00038 * 147.21342 * 13 3 2 15 15 H 1.08996 * 109.46634 * 328.08977 * 14 13 3 16 16 C 1.52999 * 109.47169 * 88.08559 * 14 13 3 17 17 C 1.50697 * 109.46990 * 208.08863 * 14 13 3 18 18 O 1.21281 * 119.99911 * 352.24042 * 17 14 13 19 19 N 1.34772 * 120.00023 * 172.24712 * 17 14 13 20 20 C 1.46924 * 120.63453 * 185.27103 * 19 17 14 21 21 C 1.53623 * 108.54478 * 126.36227 * 20 19 17 22 22 C 1.53048 * 109.24027 * 54.86023 * 21 20 19 23 23 C 1.50701 * 109.44939 * 178.49839 * 22 21 20 24 24 O 1.20818 * 120.00050 * 120.06320 * 23 22 21 25 25 O 1.34237 * 119.99789 * 300.05909 * 23 22 21 26 26 C 1.45198 * 116.99921 * 180.02562 * 25 23 22 27 27 C 1.53041 * 109.53580 * 298.51070 * 22 21 20 28 28 C 1.46934 * 120.62839 * 5.54588 * 19 17 14 29 29 H 1.09000 * 109.46936 * 185.43186 * 1 2 3 30 30 H 1.08996 * 109.47032 * 305.43740 * 1 2 3 31 31 H 1.09000 * 109.46841 * 65.43441 * 1 2 3 32 32 H 1.08994 * 109.47018 * 240.00141 * 2 1 3 33 33 H 1.08996 * 109.46992 * 120.00316 * 2 1 3 34 34 H 0.96999 * 120.00147 * 179.97438 * 8 7 5 35 35 H 1.00900 * 111.00362 * 23.25294 * 13 3 2 36 36 H 1.09003 * 109.47117 * 53.16700 * 16 14 13 37 37 H 1.08997 * 109.47201 * 173.16963 * 16 14 13 38 38 H 1.08996 * 109.47504 * 293.16807 * 16 14 13 39 39 H 1.08998 * 109.59061 * 246.20130 * 20 19 17 40 40 H 1.09006 * 109.58188 * 6.62429 * 20 19 17 41 41 H 1.08998 * 109.63995 * 294.86841 * 21 20 19 42 42 H 1.09000 * 109.43378 * 174.72925 * 21 20 19 43 43 H 1.08999 * 109.45990 * 58.53101 * 22 21 20 44 44 H 1.08997 * 109.46746 * 180.02562 * 26 25 23 45 45 H 1.08998 * 109.46969 * 300.00020 * 26 25 23 46 46 H 1.08994 * 109.47326 * 60.00007 * 26 25 23 47 47 H 1.08997 * 109.49667 * 301.40693 * 27 22 21 48 48 H 1.09000 * 109.51901 * 181.33468 * 27 22 21 49 49 H 1.08993 * 109.58748 * 353.38085 * 28 19 17 50 50 H 1.09001 * 109.57967 * 113.66129 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6095 1.9800 0.8449 5 6 3.5426 1.4440 0.1165 6 1 4.1440 1.8899 -0.6618 7 6 4.1493 0.8762 1.2167 8 7 3.4169 0.3329 2.1642 9 14 6.0117 0.8787 1.3614 10 1 6.5063 2.2789 1.3617 11 1 6.4107 0.2120 2.6269 12 1 6.5986 0.1467 0.2103 13 7 1.6453 2.1015 -1.2521 14 6 1.3879 3.5315 -1.0361 15 1 0.9955 3.6821 -0.0304 16 6 2.6925 4.3145 -1.1970 17 6 0.3815 4.0190 -2.0463 18 8 0.0295 3.2920 -2.9510 19 7 -0.1273 5.2628 -1.9444 20 6 -1.1925 5.7125 -2.8509 21 6 -2.3626 6.2395 -2.0063 22 6 -1.8496 7.3222 -1.0539 23 6 -3.0005 7.8686 -0.2489 24 8 -2.9879 7.7854 0.9564 25 8 -4.0395 8.4478 -0.8709 26 6 -5.1121 8.9520 -0.0322 27 6 -0.8068 6.7205 -0.1092 28 6 0.3770 6.1970 -0.9285 29 1 -0.3633 -1.0231 0.0973 30 1 -0.3633 0.5958 0.8373 31 1 -0.3633 0.4272 -0.9347 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.8437 -0.0670 2.9381 35 1 0.8429 1.6475 -1.6623 36 1 3.1475 4.0691 -2.1567 37 1 2.4821 5.3832 -1.1573 38 1 3.3774 4.0490 -0.3918 39 1 -0.8144 6.5079 -3.4930 40 1 -1.5294 4.8754 -3.4624 41 1 -2.7950 5.4224 -1.4290 42 1 -3.1222 6.6631 -2.6634 43 1 -1.3952 8.1277 -1.6308 44 1 -5.8866 9.3935 -0.6593 45 1 -5.5372 8.1318 0.5463 46 1 -4.7180 9.7088 0.6459 47 1 -1.2538 5.8988 0.4503 48 1 -0.4590 7.4861 0.5844 49 1 1.0760 5.6798 -0.2714 50 1 0.8827 7.0298 -1.4171 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565169731.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:26 Heat of formation + Delta-G solvation = -141.981459 kcal Electronic energy + Delta-G solvation = -29308.120639 eV Core-core repulsion = 25334.539221 eV Total energy + Delta-G solvation = -3973.581418 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.92558 -41.19221 -38.75973 -37.88073 -37.44210 -35.09838 -34.20241 -33.37205 -32.10808 -30.15360 -29.03204 -28.38104 -27.13778 -25.01401 -24.54734 -24.06635 -22.56408 -21.51291 -21.23106 -20.05826 -18.76600 -18.46323 -18.09780 -17.61547 -17.40025 -17.15075 -16.69512 -16.50501 -15.69191 -15.55141 -15.24877 -15.14795 -14.77927 -14.68085 -14.44732 -14.34224 -14.12528 -13.84805 -13.67894 -13.41754 -13.24119 -13.18282 -12.96114 -12.88610 -12.84705 -12.59039 -12.47604 -12.34887 -12.29861 -11.89836 -11.87675 -11.76976 -11.71773 -11.64369 -11.54210 -11.43082 -11.03704 -10.59958 -10.36951 -9.71679 -9.06047 -8.01788 -6.12143 1.10808 1.45493 1.47545 1.54341 1.54647 1.71558 1.94799 2.48057 3.23220 3.44265 3.45545 3.60027 3.71663 3.75007 3.96783 4.14233 4.24285 4.28312 4.30259 4.31610 4.33921 4.38030 4.46682 4.51662 4.59715 4.66327 4.67204 4.71691 4.75093 4.82131 4.86007 4.91662 5.03735 5.04827 5.10844 5.16506 5.20818 5.32320 5.36172 5.46521 5.54800 5.58994 5.77529 5.89576 6.22715 6.38589 6.54651 6.67363 6.89765 6.99538 7.13544 7.55828 9.01804 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.017170 B = 0.002847 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.367057 B = 9833.536192 C =10020.458946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.126 4.126 3 C 0.228 3.772 4 H -0.021 1.021 5 C -0.500 4.500 6 H 0.056 0.944 7 C 0.009 3.991 8 N -0.922 5.922 9 Si 0.954 3.046 10 H -0.269 1.269 11 H -0.288 1.288 12 H -0.277 1.277 13 N -0.676 5.676 14 C 0.075 3.925 15 H 0.055 0.945 16 C -0.129 4.129 17 C 0.518 3.482 18 O -0.569 6.569 19 N -0.610 5.610 20 C 0.112 3.888 21 C -0.116 4.116 22 C -0.073 4.073 23 C 0.466 3.534 24 O -0.540 6.540 25 O -0.359 6.359 26 C 0.027 3.973 27 C -0.117 4.117 28 C 0.098 3.902 29 H 0.059 0.941 30 H 0.037 0.963 31 H 0.045 0.955 32 H 0.033 0.967 33 H 0.074 0.926 34 H 0.259 0.741 35 H 0.331 0.669 36 H 0.050 0.950 37 H 0.090 0.910 38 H 0.058 0.942 39 H 0.103 0.897 40 H 0.079 0.921 41 H 0.051 0.949 42 H 0.112 0.888 43 H 0.147 0.853 44 H 0.132 0.868 45 H 0.055 0.945 46 H 0.062 0.938 47 H 0.051 0.949 48 H 0.097 0.903 49 H 0.094 0.906 50 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.947 20.366 -7.209 25.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.165 4.165 3 C 0.120 3.880 4 H -0.004 1.004 5 C -0.538 4.538 6 H 0.074 0.926 7 C -0.189 4.189 8 N -0.563 5.563 9 Si 0.780 3.220 10 H -0.194 1.194 11 H -0.214 1.214 12 H -0.203 1.203 13 N -0.311 5.311 14 C -0.039 4.039 15 H 0.073 0.927 16 C -0.187 4.187 17 C 0.307 3.693 18 O -0.448 6.448 19 N -0.343 5.343 20 C -0.009 4.009 21 C -0.154 4.154 22 C -0.091 4.091 23 C 0.310 3.690 24 O -0.430 6.430 25 O -0.275 6.275 26 C -0.066 4.066 27 C -0.156 4.156 28 C -0.024 4.024 29 H 0.078 0.922 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.092 0.908 34 H 0.068 0.932 35 H 0.151 0.849 36 H 0.069 0.931 37 H 0.109 0.891 38 H 0.077 0.923 39 H 0.121 0.879 40 H 0.098 0.902 41 H 0.070 0.930 42 H 0.131 0.869 43 H 0.165 0.835 44 H 0.151 0.849 45 H 0.074 0.926 46 H 0.081 0.919 47 H 0.070 0.930 48 H 0.115 0.885 49 H 0.112 0.888 50 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -13.519 19.989 -7.365 25.230 hybrid contribution -0.100 -0.574 1.330 1.452 sum -13.619 19.415 -6.035 24.471 Atomic orbital electron populations 1.21743 0.96824 1.01136 0.99919 1.21692 0.93759 0.99666 1.01347 1.19072 0.94580 0.90200 0.84161 1.00399 1.21419 0.92181 1.35922 1.04313 0.92604 1.25666 1.02091 0.95453 0.95650 1.69990 1.36310 1.39848 1.10126 0.85678 0.81021 0.78421 0.76869 1.19412 1.21353 1.20298 1.60649 1.41083 1.00557 1.28775 1.21515 0.95404 0.91486 0.95455 0.92728 1.21875 0.95278 0.98939 1.02609 1.20932 0.81300 0.81593 0.85497 1.90623 1.62042 1.56504 1.35626 1.48175 1.38310 1.12396 1.35438 1.21817 0.86451 1.00842 0.91818 1.21942 0.98507 0.96948 0.98006 1.21158 0.90989 1.00210 0.96773 1.24184 0.83563 0.73945 0.87276 1.90682 1.79531 1.55247 1.17505 1.86499 1.29945 1.68968 1.42039 1.23528 0.87838 0.99138 0.96090 1.21819 0.95050 1.01265 0.97444 1.22221 0.96089 0.93727 0.90329 0.92240 0.94362 0.93575 0.94771 0.90802 0.93184 0.84865 0.93078 0.89139 0.92284 0.87934 0.90222 0.92980 0.86940 0.83509 0.84949 0.92592 0.91914 0.93006 0.88489 0.88786 0.87081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.67 9.67 71.98 0.70 -4.98 16 2 C -0.13 -6.20 5.30 30.60 0.16 -6.04 16 3 C 0.23 11.59 2.05 44.17 0.09 11.68 16 4 H -0.02 -1.19 7.25 -2.39 -0.02 -1.21 16 5 C -0.50 -27.41 7.64 25.60 0.20 -27.21 16 6 H 0.06 3.09 7.56 -2.91 -0.02 3.07 16 7 C 0.01 0.51 5.29 84.66 0.45 0.95 16 8 N -0.92 -52.89 11.29 21.45 0.24 -52.65 16 9 Si 0.95 43.85 29.54 68.60 2.03 45.87 16 10 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 11 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 12 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 13 N -0.68 -30.49 6.02 -477.16 -2.87 -33.36 16 14 C 0.07 2.78 2.20 44.17 0.10 2.88 16 15 H 0.06 2.10 6.70 -2.39 -0.02 2.08 16 16 C -0.13 -4.30 8.61 71.98 0.62 -3.68 16 17 C 0.52 17.24 7.02 87.66 0.62 17.86 16 18 O -0.57 -22.70 15.14 -3.03 -0.05 -22.74 16 19 N -0.61 -14.13 2.97 -818.07 -2.43 -16.55 16 20 C 0.11 1.97 6.44 86.51 0.56 2.53 16 21 C -0.12 -1.68 5.31 30.82 0.16 -1.52 16 22 C -0.07 -1.00 2.59 -11.51 -0.03 -1.03 16 23 C 0.47 8.60 7.26 71.24 0.52 9.11 16 24 O -0.54 -13.84 15.73 21.99 0.35 -13.49 16 25 O -0.36 -5.47 10.44 -51.48 -0.54 -6.01 16 26 C 0.03 0.30 10.56 113.37 1.20 1.50 16 27 C -0.12 -2.02 4.65 30.67 0.14 -1.88 16 28 C 0.10 1.71 5.05 86.36 0.44 2.14 16 29 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.05 1.79 6.64 -2.39 -0.02 1.77 16 32 H 0.03 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.07 4.05 5.96 -2.39 -0.01 4.04 16 34 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 35 H 0.33 14.95 5.24 -89.69 -0.47 14.48 16 36 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.09 2.16 5.37 -2.39 -0.01 2.15 16 38 H 0.06 2.26 7.06 -2.39 -0.02 2.25 16 39 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.08 1.76 7.04 -2.38 -0.02 1.75 16 41 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.11 1.14 8.08 -2.39 -0.02 1.12 16 43 H 0.15 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.13 0.60 8.14 -2.39 -0.02 0.58 16 45 H 0.06 0.71 8.13 -2.39 -0.02 0.69 16 46 H 0.06 0.71 8.13 -2.39 -0.02 0.69 16 47 H 0.05 1.19 8.13 -2.39 -0.02 1.17 16 48 H 0.10 1.51 8.07 -2.39 -0.02 1.49 16 49 H 0.09 1.92 4.55 -2.39 -0.01 1.91 16 50 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -72.11 387.57 3.10 -69.00 By element: Atomic # 1 Polarization: 27.14 SS G_CDS: 0.47 Total: 27.61 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: 5.91 Total: 2.32 kcal Atomic # 7 Polarization: -97.50 SS G_CDS: -5.06 Total: -102.56 kcal Atomic # 8 Polarization: -42.01 SS G_CDS: -0.24 Total: -42.25 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal Total: -72.11 3.10 -69.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565169731.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.979 kcal (2) G-P(sol) polarization free energy of solvation -72.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds