Wall clock time and date at job start Tue Mar 31 2020 15:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52991 * 109.47570 * 2 1 4 4 H 1.09004 * 109.47357 * 305.31284 * 3 2 1 5 5 C 1.50701 * 109.47503 * 185.30718 * 3 2 1 6 6 H 1.07995 * 120.00329 * 240.00634 * 5 3 2 7 7 C 1.37884 * 119.99228 * 60.00192 * 5 3 2 8 8 N 1.31511 * 120.00539 * 359.72788 * 7 5 3 9 9 Si 1.86802 * 119.99419 * 180.02562 * 7 5 3 10 10 H 1.48491 * 109.47482 * 60.00088 * 9 7 5 11 11 H 1.48500 * 109.46748 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47296 * 299.99967 * 9 7 5 13 13 N 1.46902 * 109.47059 * 65.31105 * 3 2 1 14 14 C 1.46903 * 111.00359 * 212.92467 * 13 3 2 15 15 H 1.08998 * 109.46781 * 34.00053 * 14 13 3 16 16 C 1.53000 * 109.46878 * 274.00342 * 14 13 3 17 17 C 1.50692 * 109.47268 * 154.00117 * 14 13 3 18 18 O 1.21281 * 120.00193 * 22.86939 * 17 14 13 19 19 N 1.34776 * 120.00210 * 202.87403 * 17 14 13 20 20 C 1.46927 * 120.62813 * 4.47127 * 19 17 14 21 21 C 1.52760 * 109.00583 * 233.58623 * 20 19 17 22 22 C 1.53035 * 109.38715 * 305.58605 * 21 20 19 23 23 C 1.50698 * 109.46609 * 181.26456 * 22 21 20 24 24 O 1.20827 * 119.99985 * 239.93744 * 23 22 21 25 25 O 1.34230 * 120.00043 * 59.92640 * 23 22 21 26 26 C 1.45198 * 117.00119 * 180.02562 * 25 23 22 27 27 C 1.53041 * 109.53885 * 61.24037 * 22 21 20 28 28 C 1.46921 * 120.63255 * 184.75286 * 19 17 14 29 29 H 1.09000 * 109.47329 * 183.82900 * 1 2 3 30 30 H 1.09006 * 109.46722 * 303.82584 * 1 2 3 31 31 H 1.09002 * 109.46946 * 63.82401 * 1 2 3 32 32 H 1.09005 * 109.46862 * 239.99642 * 2 1 3 33 33 H 1.09005 * 109.47136 * 120.00770 * 2 1 3 34 34 H 0.96995 * 120.00585 * 179.97438 * 8 7 5 35 35 H 1.00906 * 110.99712 * 336.87861 * 13 3 2 36 36 H 1.09002 * 109.47127 * 59.27705 * 16 14 13 37 37 H 1.09005 * 109.46915 * 179.27766 * 16 14 13 38 38 H 1.08999 * 109.47028 * 299.27997 * 16 14 13 39 39 H 1.09005 * 109.58415 * 353.41948 * 20 19 17 40 40 H 1.08998 * 109.58998 * 113.84836 * 20 19 17 41 41 H 1.09003 * 109.56260 * 185.55184 * 21 20 19 42 42 H 1.09005 * 109.36460 * 65.49963 * 21 20 19 43 43 H 1.09006 * 109.45839 * 301.22304 * 22 21 20 44 44 H 1.09003 * 109.47477 * 300.00739 * 26 25 23 45 45 H 1.09003 * 109.46765 * 60.00086 * 26 25 23 46 46 H 1.08997 * 109.47446 * 179.97438 * 26 25 23 47 47 H 1.08993 * 109.50182 * 178.68609 * 27 22 21 48 48 H 1.09003 * 109.52419 * 58.60212 * 27 22 21 49 49 H 1.09005 * 109.59079 * 246.15127 * 28 19 17 50 50 H 1.09000 * 109.59165 * 6.43569 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6012 1.9830 -0.8386 5 6 3.5413 1.4444 -0.1314 6 1 4.1506 1.8874 0.6424 7 6 4.1370 0.8804 -1.2397 8 7 3.3953 0.3361 -2.1795 9 14 5.9979 0.8822 -1.4023 10 1 6.5954 0.1454 -0.2600 11 1 6.3842 0.2213 -2.6748 12 1 6.4935 2.2822 -1.4020 13 7 1.6579 2.0969 1.2584 14 6 1.3954 3.5271 1.0495 15 1 0.9570 3.6756 0.0626 16 6 2.7086 4.3061 1.1467 17 6 0.4388 4.0215 2.1036 18 8 0.3351 3.4266 3.1554 19 7 -0.3017 5.1247 1.8777 20 6 -0.2603 5.7998 0.5733 21 6 0.0695 7.2759 0.7874 22 6 -0.9285 7.8810 1.7773 23 6 -0.6239 9.3448 1.9660 24 8 -0.3459 9.7674 3.0633 25 8 -0.6611 10.1790 0.9151 26 6 -0.3561 11.5754 1.1708 27 6 -0.8169 7.1594 3.1223 28 6 -1.1609 5.6786 2.9329 29 1 -0.3634 -1.0254 0.0686 30 1 -0.3633 0.5721 0.8538 31 1 -0.3633 0.4533 -0.9223 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5140 0.8900 34 1 3.8143 -0.0603 -2.9593 35 1 0.8609 1.6402 1.6760 36 1 3.4051 3.9398 0.3925 37 1 2.5157 5.3658 0.9789 38 1 3.1405 4.1679 2.1378 39 1 0.5073 5.3420 -0.0508 40 1 -1.2311 5.7122 0.0855 41 1 0.0058 7.8057 -0.1631 42 1 1.0793 7.3663 1.1879 43 1 -1.9403 7.7682 1.3876 44 1 -1.0701 11.9776 1.8896 45 1 0.6526 11.6587 1.5754 46 1 -0.4214 12.1380 0.2396 47 1 -1.5114 7.6062 3.8336 48 1 0.2010 7.2507 3.5013 49 1 -2.2068 5.5810 2.6414 50 1 -0.9894 5.1395 3.8645 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565169738.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:32 Heat of formation + Delta-G solvation = -124.132761 kcal Electronic energy + Delta-G solvation = -29266.096861 eV Core-core repulsion = 25293.289421 eV Total energy + Delta-G solvation = -3972.807440 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.08915 -40.04118 -37.69380 -36.70237 -36.18361 -33.51481 -32.87206 -31.70490 -31.17656 -28.60598 -28.33871 -26.55191 -26.18987 -23.95492 -23.10366 -22.65873 -21.71564 -20.43702 -19.57654 -18.75709 -17.96220 -17.29210 -16.81165 -16.49164 -16.24119 -16.00235 -15.20788 -14.80004 -14.62611 -14.42288 -14.29825 -14.07843 -13.70732 -13.47534 -13.23693 -12.90098 -12.74969 -12.57420 -12.49321 -12.34306 -12.12571 -12.06527 -11.64531 -11.48903 -11.22600 -11.20728 -11.15612 -11.09215 -11.02660 -10.94833 -10.81122 -10.64207 -10.62316 -9.91795 -9.84211 -9.64152 -9.14148 -9.09117 -8.68188 -8.32430 -7.26447 -5.96109 -3.99359 1.86507 2.34872 2.87343 3.01323 3.34648 3.39204 3.43226 4.18208 4.33055 4.40859 4.45131 4.69956 4.74653 4.79271 4.83184 4.90942 5.02516 5.13840 5.16739 5.19577 5.33221 5.35248 5.36589 5.51989 5.55354 5.73348 5.75849 5.78993 5.88848 5.95481 6.06068 6.16864 6.17959 6.23388 6.41136 6.48722 6.56069 6.83800 6.95949 7.04087 7.16196 7.36688 7.40694 7.49266 7.78556 7.94035 8.25405 8.37071 8.46448 8.74197 9.08327 9.65106 11.09151 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.015938 B = 0.002956 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.397587 B = 9470.533782 C =10435.990357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.130 4.130 3 C 0.220 3.780 4 H 0.006 0.994 5 C -0.489 4.489 6 H 0.064 0.936 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.894 3.106 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.278 1.278 13 N -0.667 5.667 14 C 0.081 3.919 15 H 0.056 0.944 16 C -0.132 4.132 17 C 0.515 3.485 18 O -0.528 6.528 19 N -0.620 5.620 20 C 0.105 3.895 21 C -0.128 4.128 22 C -0.078 4.078 23 C 0.465 3.535 24 O -0.505 6.505 25 O -0.358 6.358 26 C 0.035 3.965 27 C -0.118 4.118 28 C 0.113 3.887 29 H 0.038 0.962 30 H 0.034 0.966 31 H 0.042 0.958 32 H 0.102 0.898 33 H 0.042 0.958 34 H 0.259 0.741 35 H 0.329 0.671 36 H 0.090 0.910 37 H 0.040 0.960 38 H 0.058 0.942 39 H 0.102 0.898 40 H 0.073 0.927 41 H 0.091 0.909 42 H 0.076 0.924 43 H 0.112 0.888 44 H 0.062 0.938 45 H 0.063 0.937 46 H 0.101 0.899 47 H 0.083 0.917 48 H 0.078 0.922 49 H 0.067 0.933 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.437 18.338 2.937 21.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.169 4.169 3 C 0.113 3.887 4 H 0.024 0.976 5 C -0.528 4.528 6 H 0.083 0.917 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.722 3.278 10 H -0.203 1.203 11 H -0.216 1.216 12 H -0.204 1.204 13 N -0.302 5.302 14 C -0.032 4.032 15 H 0.074 0.926 16 C -0.190 4.190 17 C 0.304 3.696 18 O -0.403 6.403 19 N -0.356 5.356 20 C -0.018 4.018 21 C -0.166 4.166 22 C -0.097 4.097 23 C 0.308 3.692 24 O -0.393 6.393 25 O -0.274 6.274 26 C -0.059 4.059 27 C -0.156 4.156 28 C -0.010 4.010 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.120 0.880 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.149 0.851 36 H 0.108 0.892 37 H 0.059 0.941 38 H 0.077 0.923 39 H 0.120 0.880 40 H 0.091 0.909 41 H 0.110 0.890 42 H 0.095 0.905 43 H 0.130 0.870 44 H 0.080 0.920 45 H 0.082 0.918 46 H 0.120 0.880 47 H 0.101 0.899 48 H 0.096 0.904 49 H 0.085 0.915 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -10.726 18.148 3.868 21.433 hybrid contribution 0.119 0.324 -0.594 0.687 sum -10.607 18.472 3.274 21.551 Atomic orbital electron populations 1.21892 0.99644 0.99635 0.99660 1.21847 0.91215 1.00513 1.03293 1.19290 0.95681 0.89943 0.83818 0.97629 1.21226 0.91106 1.36223 1.04235 0.91745 1.24963 0.97987 0.95655 0.95962 1.69851 1.34784 1.39327 1.09786 0.86629 0.85913 0.78138 0.77096 1.20334 1.21567 1.20419 1.60688 1.41203 0.98553 1.29734 1.21515 0.94251 0.93090 0.94341 0.92648 1.21777 0.96666 0.96435 1.04136 1.21362 0.79756 0.79292 0.89239 1.90659 1.66381 1.55959 1.27263 1.48216 1.45400 1.28426 1.13588 1.21738 1.03328 0.91512 0.85206 1.21895 0.99054 0.96209 0.99433 1.21118 1.02752 0.86469 0.99393 1.23855 0.73285 0.89705 0.82345 1.90677 1.43835 1.78249 1.26494 1.86513 1.81064 1.20937 1.38919 1.23277 1.01530 0.77958 1.03152 1.21859 1.04297 0.94728 0.94765 1.21526 0.93831 0.92487 0.93117 0.94307 0.94707 0.93898 0.88006 0.93946 0.93060 0.85097 0.89170 0.94094 0.92296 0.88022 0.90896 0.89013 0.90480 0.87030 0.91957 0.91842 0.88012 0.89854 0.90361 0.91492 0.88365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 9.81 37.16 0.36 -2.58 16 2 C -0.13 -3.04 5.30 -26.74 -0.14 -3.19 16 3 C 0.22 5.29 2.03 -68.87 -0.14 5.15 16 4 H 0.01 0.16 7.28 -51.93 -0.38 -0.22 16 5 C -0.49 -12.96 7.43 -34.44 -0.26 -13.22 16 6 H 0.06 1.74 7.39 -52.49 -0.39 1.36 16 7 C 0.05 1.46 5.29 -17.82 -0.09 1.37 16 8 N -0.90 -24.75 11.28 55.43 0.63 -24.13 16 9 Si 0.89 21.04 29.54 -169.99 -5.02 16.01 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 N -0.67 -14.46 5.95 -102.17 -0.61 -15.07 16 14 C 0.08 1.48 2.16 -68.87 -0.15 1.33 16 15 H 0.06 0.97 5.61 -51.93 -0.29 0.68 16 16 C -0.13 -2.31 9.04 37.16 0.34 -1.97 16 17 C 0.51 8.68 6.74 -10.99 -0.07 8.61 16 18 O -0.53 -10.65 15.56 5.56 0.09 -10.56 16 19 N -0.62 -7.81 2.98 -173.03 -0.52 -8.33 16 20 C 0.11 1.02 6.04 -3.93 -0.02 1.00 16 21 C -0.13 -1.06 5.28 -26.84 -0.14 -1.20 16 22 C -0.08 -0.65 2.59 -91.73 -0.24 -0.88 16 23 C 0.47 4.66 7.26 36.00 0.26 4.92 16 24 O -0.51 -6.48 15.73 -18.75 -0.29 -6.78 16 25 O -0.36 -3.16 10.44 -39.26 -0.41 -3.57 16 26 C 0.03 0.22 10.56 101.05 1.07 1.29 16 27 C -0.12 -1.12 4.65 -26.61 -0.12 -1.25 16 28 C 0.11 1.21 6.42 -3.71 -0.02 1.18 16 29 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.03 0.64 6.42 -51.93 -0.33 0.31 16 31 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.10 2.65 5.94 -51.93 -0.31 2.34 16 33 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 35 H 0.33 7.08 5.56 -39.29 -0.22 6.86 16 36 H 0.09 1.78 6.49 -51.93 -0.34 1.45 16 37 H 0.04 0.57 7.59 -51.93 -0.39 0.18 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.10 1.08 5.08 -51.93 -0.26 0.81 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.09 0.62 8.08 -51.93 -0.42 0.20 16 42 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.11 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.39 8.13 -51.93 -0.42 -0.03 16 45 H 0.06 0.43 8.13 -51.93 -0.42 0.00 16 46 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 47 H 0.08 0.73 8.07 -51.93 -0.42 0.31 16 48 H 0.08 0.89 8.13 -51.93 -0.42 0.47 16 49 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.10 1.23 7.03 -51.93 -0.37 0.86 16 LS Contribution 389.93 15.07 5.88 5.88 Total: -1.00 -31.71 389.93 -7.96 -39.67 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -8.32 Total: 6.32 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: 0.62 Total: 0.55 kcal Atomic # 7 Polarization: -47.02 SS G_CDS: -0.50 Total: -47.52 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -0.62 Total: -20.91 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.71 -7.96 -39.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565169738.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.461 kcal (2) G-P(sol) polarization free energy of solvation -31.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds