Wall clock time and date at job start Tue Mar 31 2020 15:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52991 * 109.47570 * 2 1 4 4 H 1.09004 * 109.47357 * 305.31284 * 3 2 1 5 5 C 1.50701 * 109.47503 * 185.30718 * 3 2 1 6 6 H 1.07995 * 120.00329 * 240.00634 * 5 3 2 7 7 C 1.37884 * 119.99228 * 60.00192 * 5 3 2 8 8 N 1.31511 * 120.00539 * 359.72788 * 7 5 3 9 9 Si 1.86802 * 119.99419 * 180.02562 * 7 5 3 10 10 H 1.48491 * 109.47482 * 60.00088 * 9 7 5 11 11 H 1.48500 * 109.46748 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47296 * 299.99967 * 9 7 5 13 13 N 1.46902 * 109.47059 * 65.31105 * 3 2 1 14 14 C 1.46903 * 111.00359 * 212.92467 * 13 3 2 15 15 H 1.08998 * 109.46781 * 34.00053 * 14 13 3 16 16 C 1.53000 * 109.46878 * 274.00342 * 14 13 3 17 17 C 1.50692 * 109.47268 * 154.00117 * 14 13 3 18 18 O 1.21281 * 120.00193 * 22.86939 * 17 14 13 19 19 N 1.34776 * 120.00210 * 202.87403 * 17 14 13 20 20 C 1.46927 * 120.62813 * 4.47127 * 19 17 14 21 21 C 1.52760 * 109.00583 * 233.58623 * 20 19 17 22 22 C 1.53035 * 109.38715 * 305.58605 * 21 20 19 23 23 C 1.50698 * 109.46609 * 181.26456 * 22 21 20 24 24 O 1.20827 * 119.99985 * 239.93744 * 23 22 21 25 25 O 1.34230 * 120.00043 * 59.92640 * 23 22 21 26 26 C 1.45198 * 117.00119 * 180.02562 * 25 23 22 27 27 C 1.53041 * 109.53885 * 61.24037 * 22 21 20 28 28 C 1.46921 * 120.63255 * 184.75286 * 19 17 14 29 29 H 1.09000 * 109.47329 * 183.82900 * 1 2 3 30 30 H 1.09006 * 109.46722 * 303.82584 * 1 2 3 31 31 H 1.09002 * 109.46946 * 63.82401 * 1 2 3 32 32 H 1.09005 * 109.46862 * 239.99642 * 2 1 3 33 33 H 1.09005 * 109.47136 * 120.00770 * 2 1 3 34 34 H 0.96995 * 120.00585 * 179.97438 * 8 7 5 35 35 H 1.00906 * 110.99712 * 336.87861 * 13 3 2 36 36 H 1.09002 * 109.47127 * 59.27705 * 16 14 13 37 37 H 1.09005 * 109.46915 * 179.27766 * 16 14 13 38 38 H 1.08999 * 109.47028 * 299.27997 * 16 14 13 39 39 H 1.09005 * 109.58415 * 353.41948 * 20 19 17 40 40 H 1.08998 * 109.58998 * 113.84836 * 20 19 17 41 41 H 1.09003 * 109.56260 * 185.55184 * 21 20 19 42 42 H 1.09005 * 109.36460 * 65.49963 * 21 20 19 43 43 H 1.09006 * 109.45839 * 301.22304 * 22 21 20 44 44 H 1.09003 * 109.47477 * 300.00739 * 26 25 23 45 45 H 1.09003 * 109.46765 * 60.00086 * 26 25 23 46 46 H 1.08997 * 109.47446 * 179.97438 * 26 25 23 47 47 H 1.08993 * 109.50182 * 178.68609 * 27 22 21 48 48 H 1.09003 * 109.52419 * 58.60212 * 27 22 21 49 49 H 1.09005 * 109.59079 * 246.15127 * 28 19 17 50 50 H 1.09000 * 109.59165 * 6.43569 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6012 1.9830 -0.8386 5 6 3.5413 1.4444 -0.1314 6 1 4.1506 1.8874 0.6424 7 6 4.1370 0.8804 -1.2397 8 7 3.3953 0.3361 -2.1795 9 14 5.9979 0.8822 -1.4023 10 1 6.5954 0.1454 -0.2600 11 1 6.3842 0.2213 -2.6748 12 1 6.4935 2.2822 -1.4020 13 7 1.6579 2.0969 1.2584 14 6 1.3954 3.5271 1.0495 15 1 0.9570 3.6756 0.0626 16 6 2.7086 4.3061 1.1467 17 6 0.4388 4.0215 2.1036 18 8 0.3351 3.4266 3.1554 19 7 -0.3017 5.1247 1.8777 20 6 -0.2603 5.7998 0.5733 21 6 0.0695 7.2759 0.7874 22 6 -0.9285 7.8810 1.7773 23 6 -0.6239 9.3448 1.9660 24 8 -0.3459 9.7674 3.0633 25 8 -0.6611 10.1790 0.9151 26 6 -0.3561 11.5754 1.1708 27 6 -0.8169 7.1594 3.1223 28 6 -1.1609 5.6786 2.9329 29 1 -0.3634 -1.0254 0.0686 30 1 -0.3633 0.5721 0.8538 31 1 -0.3633 0.4533 -0.9223 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5140 0.8900 34 1 3.8143 -0.0603 -2.9593 35 1 0.8609 1.6402 1.6760 36 1 3.4051 3.9398 0.3925 37 1 2.5157 5.3658 0.9789 38 1 3.1405 4.1679 2.1378 39 1 0.5073 5.3420 -0.0508 40 1 -1.2311 5.7122 0.0855 41 1 0.0058 7.8057 -0.1631 42 1 1.0793 7.3663 1.1879 43 1 -1.9403 7.7682 1.3876 44 1 -1.0701 11.9776 1.8896 45 1 0.6526 11.6587 1.5754 46 1 -0.4214 12.1380 0.2396 47 1 -1.5114 7.6062 3.8336 48 1 0.2010 7.2507 3.5013 49 1 -2.2068 5.5810 2.6414 50 1 -0.9894 5.1395 3.8645 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565169738.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:30 Heat of formation + Delta-G solvation = -144.182706 kcal Electronic energy + Delta-G solvation = -29266.966292 eV Core-core repulsion = 25293.289421 eV Total energy + Delta-G solvation = -3973.676871 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.91324 -41.15967 -38.76620 -37.87717 -37.45465 -34.96769 -34.15935 -33.39852 -32.16335 -30.12640 -29.05130 -28.40098 -27.11112 -25.10758 -24.57576 -23.85553 -22.72227 -21.47266 -21.23135 -19.84365 -18.79075 -18.47300 -18.12700 -17.65249 -17.30025 -17.24413 -16.61066 -16.32709 -15.95259 -15.48761 -15.30643 -15.12670 -14.78804 -14.65836 -14.43356 -14.17178 -14.06825 -13.88897 -13.64271 -13.44589 -13.28965 -13.06840 -12.94904 -12.87827 -12.82232 -12.61443 -12.54891 -12.46184 -12.29248 -11.90505 -11.86781 -11.79320 -11.70249 -11.61486 -11.50768 -11.45170 -11.00494 -10.56131 -10.35079 -9.71582 -9.02173 -8.00903 -6.10436 1.11606 1.45555 1.47573 1.54288 1.55080 1.72217 1.94805 2.48597 3.23928 3.40830 3.56331 3.59923 3.61763 3.76584 4.00436 4.15953 4.22997 4.28579 4.31830 4.32680 4.35234 4.39012 4.52066 4.55746 4.62436 4.67787 4.70656 4.72497 4.75770 4.77361 4.83721 4.94422 5.03619 5.06305 5.11666 5.19347 5.22171 5.35148 5.37376 5.46116 5.53817 5.60713 5.79879 5.91895 6.24596 6.41058 6.56880 6.68252 6.90064 7.00913 7.16079 7.57204 9.02150 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.015938 B = 0.002956 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.397587 B = 9470.533782 C =10435.990357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.229 3.771 4 H -0.013 1.013 5 C -0.501 4.501 6 H 0.051 0.949 7 C 0.013 3.987 8 N -0.918 5.918 9 Si 0.949 3.051 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.271 1.271 13 N -0.678 5.678 14 C 0.079 3.921 15 H 0.067 0.933 16 C -0.123 4.123 17 C 0.517 3.483 18 O -0.569 6.569 19 N -0.610 5.610 20 C 0.099 3.901 21 C -0.120 4.120 22 C -0.073 4.073 23 C 0.468 3.532 24 O -0.540 6.540 25 O -0.358 6.358 26 C 0.027 3.973 27 C -0.110 4.110 28 C 0.114 3.886 29 H 0.057 0.943 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.075 0.925 33 H 0.029 0.971 34 H 0.260 0.740 35 H 0.329 0.671 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.042 0.958 39 H 0.093 0.907 40 H 0.104 0.896 41 H 0.115 0.885 42 H 0.061 0.939 43 H 0.144 0.856 44 H 0.062 0.938 45 H 0.057 0.943 46 H 0.131 0.869 47 H 0.093 0.907 48 H 0.053 0.947 49 H 0.097 0.903 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.863 20.047 1.988 23.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.166 4.166 3 C 0.121 3.879 4 H 0.004 0.996 5 C -0.540 4.540 6 H 0.070 0.930 7 C -0.185 4.185 8 N -0.559 5.559 9 Si 0.776 3.224 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.196 1.196 13 N -0.312 5.312 14 C -0.034 4.034 15 H 0.085 0.915 16 C -0.181 4.181 17 C 0.305 3.695 18 O -0.448 6.448 19 N -0.344 5.344 20 C -0.023 4.023 21 C -0.159 4.159 22 C -0.092 4.092 23 C 0.312 3.688 24 O -0.430 6.430 25 O -0.274 6.274 26 C -0.066 4.066 27 C -0.148 4.148 28 C -0.008 4.008 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.048 0.952 34 H 0.069 0.931 35 H 0.149 0.851 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.061 0.939 39 H 0.111 0.889 40 H 0.122 0.878 41 H 0.133 0.867 42 H 0.080 0.920 43 H 0.161 0.839 44 H 0.081 0.919 45 H 0.075 0.925 46 H 0.149 0.851 47 H 0.111 0.889 48 H 0.072 0.928 49 H 0.115 0.885 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.172 19.910 2.889 23.515 hybrid contribution 0.533 -0.097 -0.306 0.622 sum -11.639 19.813 2.583 23.124 Atomic orbital electron populations 1.21742 0.96492 1.01152 1.00190 1.21701 0.94071 0.99575 1.01254 1.19049 0.94361 0.90327 0.84121 0.99551 1.21428 0.92511 1.36104 1.03983 0.93041 1.25586 1.01663 0.95455 0.95778 1.69961 1.36082 1.39793 1.10051 0.85755 0.81502 0.78321 0.76850 1.20624 1.21128 1.19635 1.60558 1.41677 1.00505 1.28498 1.21540 0.95160 0.91155 0.95580 0.91534 1.21659 0.95819 0.98424 1.02196 1.20996 0.80014 0.80380 0.88110 1.90642 1.67889 1.57705 1.28526 1.48231 1.44016 1.26987 1.15147 1.22003 1.04844 0.91836 0.83578 1.21848 0.98204 0.95309 1.00500 1.21140 1.04403 0.85179 0.98468 1.24127 0.72285 0.90369 0.81994 1.90672 1.45534 1.78952 1.27856 1.86504 1.80658 1.21907 1.38331 1.23529 1.01180 0.77006 1.04862 1.21741 1.03081 0.94071 0.95954 1.21660 0.94866 0.92596 0.91701 0.92371 0.93714 0.93643 0.90692 0.95168 0.93119 0.85113 0.91665 0.90631 0.93913 0.88912 0.87829 0.86652 0.92008 0.83868 0.91915 0.92455 0.85079 0.88892 0.92822 0.88468 0.90538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.28 9.81 71.98 0.71 -4.57 16 2 C -0.13 -6.04 5.30 30.59 0.16 -5.88 16 3 C 0.23 11.24 2.03 44.17 0.09 11.33 16 4 H -0.01 -0.68 7.28 -2.39 -0.02 -0.69 16 5 C -0.50 -27.14 7.43 25.60 0.19 -26.95 16 6 H 0.05 2.86 7.39 -2.91 -0.02 2.84 16 7 C 0.01 0.72 5.29 84.66 0.45 1.17 16 8 N -0.92 -51.23 11.28 21.45 0.24 -50.99 16 9 Si 0.95 43.48 29.54 68.60 2.03 45.51 16 10 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 11 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 12 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 13 N -0.68 -29.85 5.95 -477.17 -2.84 -32.69 16 14 C 0.08 2.85 2.16 44.17 0.10 2.95 16 15 H 0.07 2.28 5.61 -2.39 -0.01 2.27 16 16 C -0.12 -4.32 9.04 71.98 0.65 -3.67 16 17 C 0.52 17.17 6.74 87.65 0.59 17.77 16 18 O -0.57 -23.18 15.56 -3.03 -0.05 -23.23 16 19 N -0.61 -14.26 2.98 -819.73 -2.44 -16.70 16 20 C 0.10 1.62 6.04 86.22 0.52 2.14 16 21 C -0.12 -1.64 5.28 30.53 0.16 -1.47 16 22 C -0.07 -0.99 2.59 -11.51 -0.03 -1.02 16 23 C 0.47 8.36 7.26 71.24 0.52 8.88 16 24 O -0.54 -13.31 15.73 21.96 0.35 -12.96 16 25 O -0.36 -5.38 10.44 -51.42 -0.54 -5.92 16 26 C 0.03 0.30 10.56 113.37 1.20 1.49 16 27 C -0.11 -1.90 4.65 30.67 0.14 -1.75 16 28 C 0.11 2.20 6.42 86.37 0.55 2.76 16 29 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.04 1.61 6.42 -2.38 -0.02 1.59 16 31 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.07 3.98 5.94 -2.38 -0.01 3.96 16 33 H 0.03 1.46 8.14 -2.38 -0.02 1.44 16 34 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 35 H 0.33 14.29 5.56 -89.69 -0.50 13.79 16 36 H 0.06 2.62 6.49 -2.39 -0.02 2.61 16 37 H 0.07 2.07 7.59 -2.38 -0.02 2.05 16 38 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.09 1.74 5.08 -2.38 -0.01 1.73 16 40 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.12 1.10 8.08 -2.39 -0.02 1.08 16 42 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 43 H 0.14 1.11 8.14 -2.38 -0.02 1.09 16 44 H 0.06 0.68 8.13 -2.39 -0.02 0.66 16 45 H 0.06 0.70 8.13 -2.39 -0.02 0.68 16 46 H 0.13 0.61 8.14 -2.39 -0.02 0.59 16 47 H 0.09 1.45 8.07 -2.39 -0.02 1.43 16 48 H 0.05 1.20 8.13 -2.39 -0.02 1.18 16 49 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 50 H 0.08 1.87 7.03 -2.39 -0.02 1.86 16 Total: -1.00 -70.56 389.93 3.18 -67.38 By element: Atomic # 1 Polarization: 25.99 SS G_CDS: 0.44 Total: 26.42 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: 6.00 Total: 3.17 kcal Atomic # 7 Polarization: -95.33 SS G_CDS: -5.04 Total: -100.37 kcal Atomic # 8 Polarization: -41.87 SS G_CDS: -0.24 Total: -42.11 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -70.56 3.18 -67.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565169738.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.802 kcal (2) G-P(sol) polarization free energy of solvation -70.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds