Wall clock time and date at job start Tue Mar 31 2020 15:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45198 * 109.47217 * 2 1 4 4 C 1.34220 * 117.00241 * 180.02562 * 3 2 1 5 5 O 1.20833 * 120.00019 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00236 * 180.27587 * 4 3 2 7 7 H 1.08999 * 109.49729 * 299.65594 * 6 4 3 8 8 C 1.53038 * 109.50152 * 179.55837 * 6 4 3 9 9 C 1.53039 * 109.54123 * 178.68166 * 8 6 4 10 10 C 1.53192 * 109.31339 * 61.36806 * 9 8 6 11 11 N 1.46929 * 108.77211 * 305.36677 * 10 9 8 12 12 C 1.34773 * 120.62672 * 233.62846 * 11 10 9 13 13 O 1.21286 * 119.99788 * 179.97438 * 12 11 10 14 14 C 1.50700 * 120.00117 * 359.97438 * 12 11 10 15 15 N 1.46908 * 109.46816 * 179.97438 * 14 12 11 16 16 C 1.46899 * 110.99565 * 174.45869 * 15 14 12 17 17 H 1.09004 * 109.47333 * 33.83551 * 16 15 14 18 18 C 1.50699 * 109.46903 * 153.83329 * 16 15 14 19 19 H 1.07998 * 119.99963 * 0.02562 * 18 16 15 20 20 C 1.37880 * 120.00277 * 180.02562 * 18 16 15 21 21 N 1.31515 * 119.99422 * 0.02562 * 20 18 16 22 22 Si 1.86798 * 120.00402 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.46984 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47089 * 119.99820 * 22 20 18 25 25 H 1.48496 * 109.47198 * 240.00265 * 22 20 18 26 26 C 1.53002 * 109.47581 * 273.83343 * 16 15 14 27 27 C 1.52999 * 109.46756 * 297.95113 * 26 16 15 28 28 C 1.46926 * 118.74236 * 53.60765 * 11 10 9 29 29 H 1.09002 * 109.47077 * 60.00018 * 1 2 3 30 30 H 1.09002 * 109.47434 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47690 * 300.00194 * 1 2 3 32 32 H 1.08996 * 109.47020 * 240.00025 * 2 1 3 33 33 H 1.09002 * 109.47077 * 119.99982 * 2 1 3 34 34 H 1.09003 * 109.45992 * 298.70891 * 8 6 4 35 35 H 1.09000 * 109.45817 * 58.66055 * 8 6 4 36 36 H 1.08995 * 109.49728 * 301.41357 * 9 8 6 37 37 H 1.09001 * 109.52615 * 181.33648 * 9 8 6 38 38 H 1.08999 * 109.59015 * 185.57687 * 10 9 8 39 39 H 1.09003 * 109.58476 * 65.15087 * 10 9 8 40 40 H 1.08996 * 109.47648 * 299.99876 * 14 12 11 41 41 H 1.09001 * 109.46614 * 60.00550 * 14 12 11 42 42 H 1.00895 * 111.00309 * 298.41261 * 15 14 12 43 43 H 0.97006 * 119.99335 * 180.02562 * 21 20 18 44 44 H 1.08998 * 109.46699 * 57.94510 * 26 16 15 45 45 H 1.08990 * 109.47256 * 177.94978 * 26 16 15 46 46 H 1.09004 * 109.47367 * 54.46478 * 27 26 16 47 47 H 1.09003 * 109.47029 * 174.46064 * 27 26 16 48 48 H 1.09001 * 109.47099 * 294.45977 * 27 26 16 49 49 H 1.08998 * 109.58619 * 186.60316 * 28 11 10 50 50 H 1.08998 * 109.70217 * 66.24404 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3446 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9206 2.9374 0.0057 7 1 3.5890 3.4722 -0.8842 8 6 5.4489 2.8580 0.0148 9 6 6.0351 4.2714 -0.0120 10 6 5.5830 5.0312 1.2391 11 7 4.1163 4.9874 1.3146 12 6 3.4008 6.1233 1.4342 13 8 2.1904 6.0739 1.4951 14 6 4.1045 7.4546 1.4921 15 7 3.1105 8.5286 1.6214 16 6 3.7639 9.8303 1.8128 17 1 4.7004 9.8522 1.2556 18 6 2.8570 10.9257 1.3141 19 1 1.8916 10.6795 0.8971 20 6 3.2596 12.2422 1.3902 21 7 4.4354 12.5418 1.8975 22 14 2.1359 13.5999 0.7714 23 1 0.8793 13.0037 0.2510 24 1 1.8183 14.5267 1.8874 25 1 2.8163 14.3487 -0.3156 26 6 4.0505 10.0433 3.3006 27 6 2.7318 10.0637 4.0761 28 6 3.4445 3.6820 1.2570 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 5.7805 2.3444 0.9173 35 1 5.7892 2.3071 -0.8620 36 1 5.6840 4.7940 -0.9017 37 1 7.1234 4.2143 -0.0295 38 1 5.9150 6.0676 1.1771 39 1 6.0088 4.5614 2.1257 40 1 4.7749 7.4742 2.3512 41 1 4.6803 7.6012 0.5783 42 1 2.4930 8.5478 0.8237 43 1 4.7185 13.4681 1.9514 44 1 4.6766 9.2311 3.6698 45 1 4.5679 10.9926 3.4386 46 1 2.1691 9.1555 3.8600 47 1 2.9396 10.1166 5.1448 48 1 2.1473 10.9334 3.7761 49 1 2.3656 3.8282 1.2068 50 1 3.6937 3.1010 2.1449 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566686817.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:27 Heat of formation + Delta-G solvation = -130.313329 kcal Electronic energy + Delta-G solvation = -28566.556786 eV Core-core repulsion = 24593.481336 eV Total energy + Delta-G solvation = -3973.075450 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.08491 -39.86274 -37.64099 -36.74296 -35.96113 -33.29920 -32.52935 -32.24861 -31.42687 -30.60741 -27.54615 -25.74125 -25.45789 -23.92277 -23.32495 -23.02860 -21.95776 -20.46985 -19.24123 -18.82671 -17.95747 -17.29331 -16.97832 -16.47347 -16.24424 -15.64093 -15.44715 -15.04433 -14.66207 -14.36184 -14.04378 -13.98744 -13.82774 -13.59539 -13.25833 -13.15163 -12.97974 -12.85357 -12.73478 -12.27827 -12.06381 -11.96472 -11.81467 -11.81179 -11.40674 -11.28382 -11.24706 -10.94802 -10.94533 -10.85606 -10.74986 -10.70474 -10.38560 -10.08993 -9.88689 -9.41236 -9.31131 -8.78929 -8.70485 -8.47724 -7.26168 -6.03171 -4.07643 1.85013 2.30054 2.90847 2.97696 3.29114 3.37609 3.42614 4.21789 4.30572 4.40963 4.45579 4.57971 4.62222 4.67131 4.78784 4.84346 4.90274 4.92124 5.17729 5.27332 5.30333 5.35133 5.38510 5.43077 5.48493 5.55852 5.57110 5.64184 5.68781 5.78073 5.83157 5.86989 5.97336 6.13305 6.42597 6.52538 6.72466 6.86829 7.21403 7.25535 7.42364 7.43262 7.49588 7.75008 7.80136 7.82673 8.24195 8.35731 8.42463 8.64846 9.01242 9.57153 11.03104 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.018823 B = 0.002445 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.155541 B =11447.487390 C =12100.131870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.061 3.939 3 O -0.353 6.353 4 C 0.472 3.528 5 O -0.507 6.507 6 C -0.096 4.096 7 H 0.114 0.886 8 C -0.103 4.103 9 C -0.135 4.135 10 C 0.104 3.896 11 N -0.622 5.622 12 C 0.518 3.482 13 O -0.518 6.518 14 C 0.047 3.953 15 N -0.669 5.669 16 C 0.217 3.783 17 H 0.001 0.999 18 C -0.511 4.511 19 H 0.061 0.939 20 C 0.063 3.937 21 N -0.890 5.890 22 Si 0.894 3.106 23 H -0.272 1.272 24 H -0.284 1.284 25 H -0.286 1.286 26 C -0.101 4.101 27 C -0.121 4.121 28 C 0.125 3.875 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.070 0.930 40 H 0.093 0.907 41 H 0.048 0.952 42 H 0.340 0.660 43 H 0.260 0.740 44 H 0.008 0.992 45 H 0.086 0.914 46 H 0.049 0.951 47 H 0.012 0.988 48 H 0.052 0.948 49 H 0.106 0.894 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.877 -22.725 -3.758 23.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.012 4.012 3 O -0.270 6.270 4 C 0.314 3.686 5 O -0.395 6.395 6 C -0.116 4.116 7 H 0.132 0.868 8 C -0.140 4.140 9 C -0.173 4.173 10 C -0.019 4.019 11 N -0.358 5.358 12 C 0.307 3.693 13 O -0.391 6.391 14 C -0.086 4.086 15 N -0.302 5.302 16 C 0.109 3.891 17 H 0.019 0.981 18 C -0.549 4.549 19 H 0.079 0.921 20 C -0.138 4.138 21 N -0.528 5.528 22 Si 0.722 3.278 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.212 1.212 26 C -0.140 4.140 27 C -0.178 4.178 28 C 0.002 3.998 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.102 0.898 38 H 0.112 0.888 39 H 0.089 0.911 40 H 0.111 0.889 41 H 0.066 0.934 42 H 0.158 0.842 43 H 0.070 0.930 44 H 0.027 0.973 45 H 0.104 0.896 46 H 0.068 0.932 47 H 0.031 0.969 48 H 0.071 0.929 49 H 0.124 0.876 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.398 -22.967 -2.999 23.204 hybrid contribution -0.001 0.661 -1.226 1.393 sum 1.397 -22.306 -4.225 22.745 Atomic orbital electron populations 1.21820 0.92417 1.02975 1.03911 1.23054 0.95610 0.80051 1.02516 1.86559 1.24342 1.32496 1.83601 1.23576 0.80647 0.92308 0.72039 1.90662 1.60501 1.43011 1.45322 1.21522 0.97338 0.89908 1.02839 0.86836 1.21435 0.91197 0.97464 1.03940 1.21952 1.01305 0.95179 0.98865 1.21809 0.79735 1.02404 0.97994 1.48162 1.06905 1.05682 1.75085 1.21169 0.87861 0.85449 0.74865 1.90678 1.14018 1.86635 1.47809 1.21812 0.95771 0.89680 1.01382 1.60400 1.18530 1.04329 1.46945 1.19174 0.93129 0.83580 0.93168 0.98098 1.21209 1.02871 0.90818 1.40030 0.92087 1.24872 0.95161 0.98591 0.95211 1.69897 1.19227 1.18439 1.45283 0.86506 0.80921 0.81951 0.78462 1.19702 1.20997 1.21182 1.21435 0.96038 1.00191 0.96340 1.21450 0.99056 1.01771 0.95529 1.21317 1.00024 0.83754 0.94748 0.91339 0.90226 0.91186 0.91272 0.91178 0.90691 0.90657 0.90953 0.89773 0.88802 0.91122 0.88870 0.93399 0.84163 0.93026 0.97297 0.89555 0.93207 0.96878 0.92912 0.87617 0.91347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 10.29 37.16 0.38 -0.57 16 2 C 0.06 0.50 6.19 37.16 0.23 0.73 16 3 O -0.35 -3.72 10.14 -39.23 -0.40 -4.12 16 4 C 0.47 5.10 7.26 36.00 0.26 5.36 16 5 O -0.51 -6.43 15.73 -18.76 -0.30 -6.72 16 6 C -0.10 -0.92 2.78 -91.65 -0.25 -1.18 16 7 H 0.11 1.07 8.14 -51.93 -0.42 0.64 16 8 C -0.10 -0.85 4.46 -26.69 -0.12 -0.97 16 9 C -0.13 -1.01 6.08 -26.61 -0.16 -1.17 16 10 C 0.10 0.94 6.34 -3.71 -0.02 0.92 16 11 N -0.62 -7.57 2.97 -172.76 -0.51 -8.09 16 12 C 0.52 8.40 7.75 -10.99 -0.09 8.31 16 13 O -0.52 -10.33 15.74 5.55 0.09 -10.24 16 14 C 0.05 0.79 4.28 -4.97 -0.02 0.77 16 15 N -0.67 -14.28 5.07 -109.21 -0.55 -14.83 16 16 C 0.22 5.25 2.30 -68.86 -0.16 5.09 16 17 H 0.00 0.04 7.84 -51.93 -0.41 -0.37 16 18 C -0.51 -13.58 7.33 -34.44 -0.25 -13.83 16 19 H 0.06 1.64 7.60 -52.49 -0.40 1.24 16 20 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 21 N -0.89 -24.64 11.34 55.43 0.63 -24.01 16 22 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 23 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 25 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 26 C -0.10 -2.42 5.57 -26.73 -0.15 -2.57 16 27 C -0.12 -2.77 9.46 37.16 0.35 -2.42 16 28 C 0.13 1.39 5.64 -3.71 -0.02 1.37 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.53 8.13 -51.93 -0.42 0.11 16 33 H 0.07 0.55 8.13 -51.93 -0.42 0.12 16 34 H 0.07 0.64 8.13 -51.93 -0.42 0.21 16 35 H 0.07 0.62 8.07 -51.93 -0.42 0.20 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.09 0.85 5.93 -51.93 -0.31 0.54 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.09 1.51 7.18 -51.93 -0.37 1.14 16 41 H 0.05 0.75 7.69 -51.93 -0.40 0.35 16 42 H 0.34 7.46 8.10 -39.29 -0.32 7.14 16 43 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 44 H 0.01 0.18 7.42 -51.93 -0.39 -0.20 16 45 H 0.09 2.27 6.13 -51.93 -0.32 1.95 16 46 H 0.05 1.14 7.50 -51.93 -0.39 0.75 16 47 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 48 H 0.05 1.29 7.37 -51.93 -0.38 0.91 16 49 H 0.11 1.38 7.00 -51.93 -0.36 1.01 16 50 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 396.72 15.07 5.98 5.98 Total: -1.00 -31.49 396.72 -8.87 -40.36 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -8.67 Total: 4.17 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: -0.12 Total: 1.46 kcal Atomic # 7 Polarization: -46.49 SS G_CDS: -0.44 Total: -46.93 kcal Atomic # 8 Polarization: -20.47 SS G_CDS: -0.61 Total: -21.08 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.49 -8.87 -40.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566686817.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.949 kcal (2) G-P(sol) polarization free energy of solvation -31.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds