Wall clock time and date at job start Tue Mar 31 2020 15:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45198 * 109.47217 * 2 1 4 4 C 1.34220 * 117.00241 * 180.02562 * 3 2 1 5 5 O 1.20833 * 120.00019 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00236 * 180.27587 * 4 3 2 7 7 H 1.08999 * 109.49729 * 299.65594 * 6 4 3 8 8 C 1.53038 * 109.50152 * 179.55837 * 6 4 3 9 9 C 1.53039 * 109.54123 * 178.68166 * 8 6 4 10 10 C 1.53192 * 109.31339 * 61.36806 * 9 8 6 11 11 N 1.46929 * 108.77211 * 305.36677 * 10 9 8 12 12 C 1.34773 * 120.62672 * 233.62846 * 11 10 9 13 13 O 1.21286 * 119.99788 * 179.97438 * 12 11 10 14 14 C 1.50700 * 120.00117 * 359.97438 * 12 11 10 15 15 N 1.46908 * 109.46816 * 179.97438 * 14 12 11 16 16 C 1.46899 * 110.99565 * 174.45869 * 15 14 12 17 17 H 1.09004 * 109.47333 * 33.83551 * 16 15 14 18 18 C 1.50699 * 109.46903 * 153.83329 * 16 15 14 19 19 H 1.07998 * 119.99963 * 0.02562 * 18 16 15 20 20 C 1.37880 * 120.00277 * 180.02562 * 18 16 15 21 21 N 1.31515 * 119.99422 * 0.02562 * 20 18 16 22 22 Si 1.86798 * 120.00402 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.46984 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47089 * 119.99820 * 22 20 18 25 25 H 1.48496 * 109.47198 * 240.00265 * 22 20 18 26 26 C 1.53002 * 109.47581 * 273.83343 * 16 15 14 27 27 C 1.52999 * 109.46756 * 297.95113 * 26 16 15 28 28 C 1.46926 * 118.74236 * 53.60765 * 11 10 9 29 29 H 1.09002 * 109.47077 * 60.00018 * 1 2 3 30 30 H 1.09002 * 109.47434 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47690 * 300.00194 * 1 2 3 32 32 H 1.08996 * 109.47020 * 240.00025 * 2 1 3 33 33 H 1.09002 * 109.47077 * 119.99982 * 2 1 3 34 34 H 1.09003 * 109.45992 * 298.70891 * 8 6 4 35 35 H 1.09000 * 109.45817 * 58.66055 * 8 6 4 36 36 H 1.08995 * 109.49728 * 301.41357 * 9 8 6 37 37 H 1.09001 * 109.52615 * 181.33648 * 9 8 6 38 38 H 1.08999 * 109.59015 * 185.57687 * 10 9 8 39 39 H 1.09003 * 109.58476 * 65.15087 * 10 9 8 40 40 H 1.08996 * 109.47648 * 299.99876 * 14 12 11 41 41 H 1.09001 * 109.46614 * 60.00550 * 14 12 11 42 42 H 1.00895 * 111.00309 * 298.41261 * 15 14 12 43 43 H 0.97006 * 119.99335 * 180.02562 * 21 20 18 44 44 H 1.08998 * 109.46699 * 57.94510 * 26 16 15 45 45 H 1.08990 * 109.47256 * 177.94978 * 26 16 15 46 46 H 1.09004 * 109.47367 * 54.46478 * 27 26 16 47 47 H 1.09003 * 109.47029 * 174.46064 * 27 26 16 48 48 H 1.09001 * 109.47099 * 294.45977 * 27 26 16 49 49 H 1.08998 * 109.58619 * 186.60316 * 28 11 10 50 50 H 1.08998 * 109.70217 * 66.24404 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3446 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9206 2.9374 0.0057 7 1 3.5890 3.4722 -0.8842 8 6 5.4489 2.8580 0.0148 9 6 6.0351 4.2714 -0.0120 10 6 5.5830 5.0312 1.2391 11 7 4.1163 4.9874 1.3146 12 6 3.4008 6.1233 1.4342 13 8 2.1904 6.0739 1.4951 14 6 4.1045 7.4546 1.4921 15 7 3.1105 8.5286 1.6214 16 6 3.7639 9.8303 1.8128 17 1 4.7004 9.8522 1.2556 18 6 2.8570 10.9257 1.3141 19 1 1.8916 10.6795 0.8971 20 6 3.2596 12.2422 1.3902 21 7 4.4354 12.5418 1.8975 22 14 2.1359 13.5999 0.7714 23 1 0.8793 13.0037 0.2510 24 1 1.8183 14.5267 1.8874 25 1 2.8163 14.3487 -0.3156 26 6 4.0505 10.0433 3.3006 27 6 2.7318 10.0637 4.0761 28 6 3.4445 3.6820 1.2570 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 5.7805 2.3444 0.9173 35 1 5.7892 2.3071 -0.8620 36 1 5.6840 4.7940 -0.9017 37 1 7.1234 4.2143 -0.0295 38 1 5.9150 6.0676 1.1771 39 1 6.0088 4.5614 2.1257 40 1 4.7749 7.4742 2.3512 41 1 4.6803 7.6012 0.5783 42 1 2.4930 8.5478 0.8237 43 1 4.7185 13.4681 1.9514 44 1 4.6766 9.2311 3.6698 45 1 4.5679 10.9926 3.4386 46 1 2.1691 9.1555 3.8600 47 1 2.9396 10.1166 5.1448 48 1 2.1473 10.9334 3.7761 49 1 2.3656 3.8282 1.2068 50 1 3.6937 3.1010 2.1449 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566686817.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:27 Heat of formation + Delta-G solvation = -149.025282 kcal Electronic energy + Delta-G solvation = -28567.368197 eV Core-core repulsion = 24593.481336 eV Total energy + Delta-G solvation = -3973.886861 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.95481 -40.96102 -38.67798 -37.82619 -37.52348 -34.58375 -34.04989 -32.96918 -32.55692 -32.04080 -29.17436 -27.23371 -26.30769 -25.34421 -24.74058 -23.97741 -22.73929 -21.39558 -20.89491 -20.02903 -18.92420 -18.54420 -17.94806 -17.78734 -17.26604 -17.00225 -16.73848 -16.44745 -15.85572 -15.41928 -15.25970 -15.08178 -14.91116 -14.73294 -14.59444 -14.26956 -14.19382 -13.84543 -13.67400 -13.59647 -13.50738 -13.02111 -12.95707 -12.82392 -12.64026 -12.61835 -12.50396 -12.39175 -12.04587 -12.01526 -11.92643 -11.73000 -11.68897 -11.55961 -11.55003 -11.30663 -10.80340 -10.70900 -10.49156 -9.72381 -8.97075 -8.08290 -6.18496 0.98373 1.41583 1.45326 1.53566 1.55712 1.65419 1.96146 2.45223 3.21042 3.42233 3.50011 3.66522 3.69906 3.82999 3.98046 3.98155 4.03705 4.08113 4.13702 4.31709 4.42623 4.44912 4.50959 4.55065 4.66827 4.70240 4.74948 4.82530 4.82939 4.86756 4.89246 4.97445 5.03162 5.07530 5.12547 5.31359 5.33392 5.38411 5.40403 5.50267 5.58241 5.74224 5.83106 5.90480 6.28633 6.31862 6.49457 6.60559 6.79009 7.00766 7.22436 7.49632 8.96957 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.018823 B = 0.002445 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.155541 B =11447.487390 C =12100.131870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.053 3.947 3 O -0.365 6.365 4 C 0.475 3.525 5 O -0.527 6.527 6 C -0.089 4.089 7 H 0.115 0.885 8 C -0.098 4.098 9 C -0.127 4.127 10 C 0.095 3.905 11 N -0.611 5.611 12 C 0.520 3.480 13 O -0.564 6.564 14 C 0.048 3.952 15 N -0.677 5.677 16 C 0.224 3.776 17 H -0.020 1.020 18 C -0.524 4.524 19 H 0.051 0.949 20 C 0.022 3.978 21 N -0.912 5.912 22 Si 0.950 3.050 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.280 1.280 26 C -0.097 4.097 27 C -0.109 4.109 28 C 0.127 3.873 29 H 0.065 0.935 30 H 0.102 0.898 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.109 0.891 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.104 0.896 41 H 0.066 0.934 42 H 0.333 0.667 43 H 0.261 0.739 44 H 0.028 0.972 45 H 0.061 0.939 46 H 0.046 0.954 47 H 0.035 0.965 48 H 0.029 0.971 49 H 0.084 0.916 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.650 -23.819 -3.890 24.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.020 4.020 3 O -0.281 6.281 4 C 0.318 3.682 5 O -0.416 6.416 6 C -0.109 4.109 7 H 0.133 0.867 8 C -0.136 4.136 9 C -0.165 4.165 10 C -0.027 4.027 11 N -0.345 5.345 12 C 0.309 3.691 13 O -0.441 6.441 14 C -0.084 4.084 15 N -0.308 5.308 16 C 0.116 3.884 17 H -0.002 1.002 18 C -0.562 4.562 19 H 0.069 0.931 20 C -0.178 4.178 21 N -0.551 5.551 22 Si 0.776 3.224 23 H -0.197 1.197 24 H -0.208 1.208 25 H -0.206 1.206 26 C -0.136 4.136 27 C -0.167 4.167 28 C 0.004 3.996 29 H 0.084 0.916 30 H 0.121 0.879 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.127 0.873 38 H 0.115 0.885 39 H 0.108 0.892 40 H 0.122 0.878 41 H 0.083 0.917 42 H 0.151 0.849 43 H 0.071 0.929 44 H 0.046 0.954 45 H 0.080 0.920 46 H 0.065 0.935 47 H 0.054 0.946 48 H 0.048 0.952 49 H 0.102 0.898 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.205 -24.099 -3.137 24.402 hybrid contribution -0.215 0.891 -1.188 1.500 sum 1.990 -23.208 -4.324 23.691 Atomic orbital electron populations 1.21844 0.90958 1.04376 1.03512 1.23305 0.96811 0.79010 1.02837 1.86567 1.24238 1.34029 1.83307 1.23725 0.80635 0.92424 0.71383 1.90650 1.60887 1.43659 1.46371 1.21498 0.98427 0.89061 1.01946 0.86684 1.21434 0.89825 0.98074 1.04250 1.21926 1.02727 0.94121 0.97692 1.22127 0.77446 1.03258 0.99821 1.48124 1.08262 1.04913 1.73224 1.20953 0.87245 0.86135 0.74755 1.90664 1.15797 1.87284 1.50376 1.21841 0.95039 0.88884 1.02641 1.60283 1.19497 1.04111 1.46915 1.18956 0.91794 0.84558 0.93044 1.00228 1.21435 1.02792 0.91922 1.40089 0.93124 1.25520 0.96347 1.00476 0.95440 1.69996 1.20340 1.18842 1.45960 0.85626 0.79288 0.79454 0.77983 1.19672 1.20815 1.20611 1.21326 0.96475 0.99534 0.96281 1.21315 0.98137 1.00466 0.96760 1.21317 0.98829 0.83349 0.96138 0.91563 0.87925 0.91705 0.90868 0.90948 0.90495 0.90243 0.91275 0.87254 0.88524 0.89193 0.87846 0.91667 0.84906 0.92950 0.95380 0.92030 0.93496 0.94631 0.95153 0.89774 0.90152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 10.29 71.98 0.74 -0.96 16 2 C 0.05 0.83 6.19 71.98 0.45 1.27 16 3 O -0.36 -7.54 10.14 -51.32 -0.52 -8.06 16 4 C 0.47 9.88 7.26 71.24 0.52 10.39 16 5 O -0.53 -12.78 15.73 21.94 0.35 -12.44 16 6 C -0.09 -1.60 2.78 -11.46 -0.03 -1.64 16 7 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 8 C -0.10 -1.40 4.46 30.62 0.14 -1.26 16 9 C -0.13 -1.53 6.08 30.67 0.19 -1.34 16 10 C 0.10 1.47 6.34 86.36 0.55 2.02 16 11 N -0.61 -14.02 2.97 -818.89 -2.43 -16.45 16 12 C 0.52 16.56 7.75 87.66 0.68 17.24 16 13 O -0.56 -22.74 15.74 -3.05 -0.05 -22.79 16 14 C 0.05 1.59 4.28 85.56 0.37 1.96 16 15 N -0.68 -28.89 5.07 -499.44 -2.53 -31.42 16 16 C 0.22 10.93 2.30 44.17 0.10 11.03 16 17 H -0.02 -1.03 7.84 -2.39 -0.02 -1.05 16 18 C -0.52 -28.14 7.33 25.60 0.19 -27.96 16 19 H 0.05 2.77 7.60 -2.91 -0.02 2.75 16 20 C 0.02 1.17 5.30 84.66 0.45 1.62 16 21 N -0.91 -50.74 11.34 21.45 0.24 -50.49 16 22 Si 0.95 43.31 29.54 68.60 2.03 45.33 16 23 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 24 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 25 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 26 C -0.10 -4.61 5.57 30.59 0.17 -4.44 16 27 C -0.11 -4.96 9.46 71.98 0.68 -4.28 16 28 C 0.13 2.71 5.64 86.36 0.49 3.20 16 29 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.07 1.06 8.13 -2.39 -0.02 1.04 16 33 H 0.07 1.08 8.13 -2.39 -0.02 1.06 16 34 H 0.08 1.10 8.13 -2.39 -0.02 1.08 16 35 H 0.08 1.12 8.07 -2.39 -0.02 1.10 16 36 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.10 1.49 5.93 -2.39 -0.01 1.47 16 39 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.10 3.19 7.18 -2.39 -0.02 3.17 16 41 H 0.07 1.95 7.69 -2.39 -0.02 1.93 16 42 H 0.33 14.88 8.10 -89.70 -0.73 14.15 16 43 H 0.26 13.86 8.31 -92.70 -0.77 13.09 16 44 H 0.03 1.19 7.42 -2.39 -0.02 1.17 16 45 H 0.06 3.24 6.13 -2.39 -0.01 3.23 16 46 H 0.05 2.12 7.50 -2.38 -0.02 2.11 16 47 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 48 H 0.03 1.47 7.37 -2.39 -0.02 1.45 16 49 H 0.08 2.22 7.00 -2.39 -0.02 2.20 16 50 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -67.79 396.72 2.94 -64.85 By element: Atomic # 1 Polarization: 24.39 SS G_CDS: 0.20 Total: 24.59 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: 5.66 Total: 6.87 kcal Atomic # 7 Polarization: -93.64 SS G_CDS: -4.72 Total: -98.36 kcal Atomic # 8 Polarization: -43.06 SS G_CDS: -0.22 Total: -43.28 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.33 kcal Total: -67.79 2.94 -64.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566686817.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.178 kcal (2) G-P(sol) polarization free energy of solvation -67.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds