Wall clock time and date at job start Tue Mar 31 2020 15:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45198 * 109.47088 * 2 1 4 4 C 1.34228 * 116.99835 * 180.02562 * 3 2 1 5 5 O 1.20823 * 120.00181 * 359.97438 * 4 3 2 6 6 C 1.50709 * 119.99875 * 180.02562 * 4 3 2 7 7 H 1.09000 * 109.52679 * 60.07393 * 6 4 3 8 8 C 1.53035 * 109.49752 * 180.16148 * 6 4 3 9 9 C 1.53042 * 109.53792 * 181.31569 * 8 6 4 10 10 C 1.53622 * 109.23972 * 298.50370 * 9 8 6 11 11 N 1.46928 * 108.54262 * 54.85853 * 10 9 8 12 12 C 1.34774 * 120.63186 * 126.36714 * 11 10 9 13 13 O 1.21287 * 120.00085 * 179.72053 * 12 11 10 14 14 C 1.50699 * 119.99712 * 359.72257 * 12 11 10 15 15 N 1.46910 * 109.46711 * 179.97438 * 14 12 11 16 16 C 1.46901 * 110.99655 * 184.76434 * 15 14 12 17 17 H 1.09005 * 109.47329 * 325.21364 * 16 15 14 18 18 C 1.50701 * 109.47273 * 85.21336 * 16 15 14 19 19 H 1.07999 * 119.99717 * 359.97438 * 18 16 15 20 20 C 1.37871 * 120.00085 * 179.97438 * 18 16 15 21 21 N 1.31513 * 120.00291 * 359.97438 * 20 18 16 22 22 Si 1.86808 * 119.99875 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.46735 * 269.99693 * 22 20 18 24 24 H 1.48496 * 109.47148 * 29.99503 * 22 20 18 25 25 H 1.48499 * 109.47268 * 149.99787 * 22 20 18 26 26 C 1.53002 * 109.46887 * 205.21303 * 16 15 14 27 27 C 1.52997 * 109.47279 * 65.64572 * 26 16 15 28 28 C 1.46930 * 118.73726 * 306.09464 * 11 10 9 29 29 H 1.08999 * 109.47203 * 300.00158 * 1 2 3 30 30 H 1.09001 * 109.46640 * 60.00425 * 1 2 3 31 31 H 1.09001 * 109.47203 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47203 * 239.99842 * 2 1 3 33 33 H 1.08998 * 109.46980 * 119.99962 * 2 1 3 34 34 H 1.09006 * 109.45736 * 301.32637 * 8 6 4 35 35 H 1.09001 * 109.46655 * 61.29022 * 8 6 4 36 36 H 1.08999 * 109.49838 * 58.57856 * 9 8 6 37 37 H 1.09006 * 109.49801 * 178.68099 * 9 8 6 38 38 H 1.09002 * 109.74488 * 295.12288 * 10 9 8 39 39 H 1.09001 * 109.66587 * 174.55074 * 10 9 8 40 40 H 1.08999 * 109.47449 * 60.00425 * 14 12 11 41 41 H 1.09000 * 109.47321 * 299.99217 * 14 12 11 42 42 H 1.00898 * 110.99664 * 60.81375 * 15 14 12 43 43 H 0.96996 * 120.00305 * 179.97438 * 21 20 18 44 44 H 1.08999 * 109.46862 * 185.64046 * 26 16 15 45 45 H 1.08994 * 109.47140 * 305.64372 * 26 16 15 46 46 H 1.09003 * 109.46814 * 294.28906 * 27 26 16 47 47 H 1.08996 * 109.47430 * 54.28124 * 27 26 16 48 48 H 1.09001 * 109.47479 * 174.28933 * 27 26 16 49 49 H 1.08998 * 109.58852 * 173.64771 * 28 11 10 50 50 H 1.09007 * 109.58334 * 293.93010 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 0.0000 7 1 3.5868 3.4695 0.8908 8 6 5.4490 2.8580 -0.0048 9 6 6.0351 4.2714 0.0288 10 6 5.5871 5.0352 -1.2265 11 7 4.1203 4.9922 -1.3011 12 6 3.4051 6.1283 -1.4196 13 8 2.1950 6.0791 -1.4853 14 6 4.1090 7.4598 -1.4706 15 7 3.1155 8.5341 -1.6014 16 6 3.7699 9.8388 -1.7678 17 1 4.6897 9.8611 -1.1834 18 6 4.0941 10.0562 -3.2233 19 1 3.8400 9.3006 -3.9519 20 6 4.7153 11.2198 -3.6249 21 7 5.0243 12.1401 -2.7378 22 14 5.1166 11.4895 -5.4293 23 1 6.4728 10.9587 -5.7194 24 1 4.1177 10.7817 -6.2698 25 1 5.0783 12.9426 -5.7331 26 6 2.8310 10.9456 -1.2836 27 6 2.6139 10.8067 0.2245 28 6 3.4484 3.6865 -1.2501 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 5.7866 2.3041 0.8712 35 1 5.7834 2.3477 -0.9081 36 1 5.6812 4.7909 0.9194 37 1 7.1234 4.2136 0.0490 38 1 6.0119 4.5663 -2.1141 39 1 5.9195 6.0714 -1.1636 40 1 4.7826 7.4822 -2.3273 41 1 4.6815 7.6036 -0.5542 42 1 2.4866 8.5430 -0.8125 43 1 5.4617 12.9586 -3.0203 44 1 3.2742 11.9179 -1.4988 45 1 1.8737 10.8608 -1.7978 46 1 2.0793 9.8795 0.4307 47 1 3.5791 10.7897 0.7306 48 1 2.0285 11.6519 0.5868 49 1 2.3693 3.8324 -1.2027 50 1 3.7005 3.1108 -2.1407 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566686819.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:37 Heat of formation + Delta-G solvation = -130.655846 kcal Electronic energy + Delta-G solvation = -28585.370980 eV Core-core repulsion = 24612.280678 eV Total energy + Delta-G solvation = -3973.090302 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.06156 -39.81877 -37.60994 -36.72600 -35.99348 -33.25504 -32.42807 -32.21916 -31.46490 -30.97045 -27.47677 -25.94443 -25.48001 -24.04786 -23.30028 -22.49141 -21.90295 -20.40740 -19.62371 -18.93401 -17.90649 -17.07494 -16.96534 -16.46490 -16.18297 -15.85327 -15.29098 -15.03117 -14.66313 -14.41805 -14.08328 -14.02261 -13.82881 -13.67019 -13.35419 -13.12714 -12.92620 -12.84293 -12.49278 -12.26925 -12.16665 -12.03097 -11.94890 -11.77238 -11.36233 -11.24704 -11.18738 -11.13493 -10.91506 -10.84476 -10.84344 -10.68785 -10.63954 -9.97125 -9.93635 -9.63921 -9.28539 -9.07897 -8.65909 -8.35879 -7.24096 -5.98030 -4.02406 1.86847 2.31489 2.95601 3.02956 3.31458 3.38809 3.44525 4.24519 4.33459 4.44286 4.48190 4.58815 4.63130 4.70499 4.82513 4.88152 4.91316 4.95467 5.21776 5.29340 5.32471 5.38390 5.40233 5.43616 5.52777 5.59867 5.62136 5.64979 5.71446 5.81391 5.90171 6.00287 6.06824 6.14632 6.18876 6.20774 6.42831 6.47804 6.85912 7.05235 7.15855 7.38363 7.44776 7.51496 7.77730 7.90979 8.23380 8.36308 8.49987 8.73804 9.05927 9.62927 11.07156 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.017185 B = 0.002555 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.919408 B =10958.343810 C =11357.738997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.061 3.939 3 O -0.354 6.354 4 C 0.472 3.528 5 O -0.507 6.507 6 C -0.095 4.095 7 H 0.113 0.887 8 C -0.103 4.103 9 C -0.134 4.134 10 C 0.103 3.897 11 N -0.621 5.621 12 C 0.518 3.482 13 O -0.522 6.522 14 C 0.054 3.946 15 N -0.671 5.671 16 C 0.220 3.780 17 H 0.003 0.997 18 C -0.495 4.495 19 H 0.062 0.938 20 C 0.056 3.944 21 N -0.896 5.896 22 Si 0.894 3.106 23 H -0.283 1.283 24 H -0.274 1.274 25 H -0.288 1.288 26 C -0.125 4.125 27 C -0.151 4.151 28 C 0.125 3.875 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.096 0.904 40 H 0.104 0.896 41 H 0.045 0.955 42 H 0.326 0.674 43 H 0.260 0.740 44 H 0.101 0.899 45 H 0.043 0.957 46 H 0.036 0.964 47 H 0.042 0.958 48 H 0.038 0.962 49 H 0.105 0.895 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.635 -20.757 8.311 22.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.012 4.012 3 O -0.270 6.270 4 C 0.314 3.686 5 O -0.395 6.395 6 C -0.115 4.115 7 H 0.131 0.869 8 C -0.141 4.141 9 C -0.172 4.172 10 C -0.020 4.020 11 N -0.358 5.358 12 C 0.307 3.693 13 O -0.396 6.396 14 C -0.079 4.079 15 N -0.304 5.304 16 C 0.113 3.887 17 H 0.020 0.980 18 C -0.533 4.533 19 H 0.080 0.920 20 C -0.145 4.145 21 N -0.536 5.536 22 Si 0.723 3.277 23 H -0.209 1.209 24 H -0.199 1.199 25 H -0.214 1.214 26 C -0.164 4.164 27 C -0.208 4.208 28 C 0.001 3.999 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.102 0.898 38 H 0.090 0.910 39 H 0.114 0.886 40 H 0.122 0.878 41 H 0.062 0.938 42 H 0.145 0.855 43 H 0.069 0.931 44 H 0.119 0.881 45 H 0.062 0.938 46 H 0.055 0.945 47 H 0.061 0.939 48 H 0.057 0.943 49 H 0.123 0.877 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.131 -20.967 7.591 22.327 hybrid contribution 0.737 0.081 0.008 0.741 sum -0.394 -20.886 7.599 22.229 Atomic orbital electron populations 1.21819 0.92433 1.02966 1.03890 1.23052 0.95598 0.80078 1.02517 1.86560 1.24366 1.32472 1.83625 1.23588 0.80630 0.92324 0.72032 1.90659 1.60496 1.43013 1.45302 1.21520 0.97363 0.89844 1.02812 0.86877 1.21442 0.91186 0.97514 1.03923 1.22025 1.01301 0.95105 0.98794 1.21918 0.79649 1.02543 0.97917 1.48159 1.06969 1.05606 1.75056 1.21242 0.87836 0.85577 0.74678 1.90662 1.14117 1.86750 1.48059 1.21741 0.95529 0.88844 1.01745 1.60384 1.18449 1.04575 1.46943 1.19201 0.90985 0.82210 0.96282 0.97984 1.21221 1.36625 1.02711 0.92785 0.92019 1.24951 0.95963 0.96046 0.97503 1.69868 1.42227 1.08331 1.33153 0.86553 0.78556 0.77180 0.85451 1.20895 1.19870 1.21353 1.21758 0.99378 1.04014 0.91239 1.21887 0.99876 0.99385 0.99683 1.21320 1.00007 0.83793 0.94760 0.91359 0.91185 0.90234 0.91174 0.91284 0.90697 0.90673 0.91010 0.89801 0.91023 0.88620 0.87801 0.93776 0.85525 0.93057 0.88110 0.93830 0.94522 0.93930 0.94288 0.87662 0.91340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 10.29 37.16 0.38 -0.57 16 2 C 0.06 0.50 6.19 37.16 0.23 0.73 16 3 O -0.35 -3.76 10.15 -39.25 -0.40 -4.16 16 4 C 0.47 5.19 7.26 36.01 0.26 5.46 16 5 O -0.51 -6.53 15.73 -18.75 -0.29 -6.82 16 6 C -0.10 -0.94 2.78 -91.65 -0.25 -1.19 16 7 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 8 C -0.10 -0.89 4.46 -26.69 -0.12 -1.01 16 9 C -0.13 -1.06 6.10 -26.39 -0.16 -1.22 16 10 C 0.10 1.01 6.37 -3.49 -0.02 0.99 16 11 N -0.62 -7.96 2.97 -172.49 -0.51 -8.47 16 12 C 0.52 8.74 7.75 -10.99 -0.09 8.66 16 13 O -0.52 -10.63 15.72 5.55 0.09 -10.55 16 14 C 0.05 0.97 4.28 -4.97 -0.02 0.95 16 15 N -0.67 -14.56 5.84 -109.21 -0.64 -15.20 16 16 C 0.22 5.36 2.02 -68.86 -0.14 5.22 16 17 H 0.00 0.07 7.85 -51.93 -0.41 -0.34 16 18 C -0.49 -13.40 8.55 -34.44 -0.29 -13.69 16 19 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 20 C 0.06 1.51 5.29 -17.82 -0.09 1.42 16 21 N -0.90 -24.91 11.29 55.43 0.63 -24.28 16 22 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 26 C -0.13 -2.94 5.36 -26.73 -0.14 -3.09 16 27 C -0.15 -2.92 9.64 37.16 0.36 -2.56 16 28 C 0.12 1.44 5.64 -3.71 -0.02 1.42 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 33 H 0.07 0.53 8.13 -51.93 -0.42 0.11 16 34 H 0.07 0.63 8.07 -51.93 -0.42 0.21 16 35 H 0.07 0.67 8.13 -51.93 -0.42 0.25 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.10 0.96 5.93 -51.93 -0.31 0.65 16 40 H 0.10 1.92 7.72 -51.93 -0.40 1.52 16 41 H 0.04 0.71 7.70 -51.93 -0.40 0.31 16 42 H 0.33 6.81 6.47 -39.29 -0.25 6.55 16 43 H 0.26 6.92 8.31 -40.82 -0.34 6.59 16 44 H 0.10 2.64 5.94 -51.93 -0.31 2.33 16 45 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.04 0.65 6.65 -51.93 -0.35 0.31 16 47 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.11 1.41 7.01 -51.93 -0.36 1.04 16 50 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 397.95 15.07 6.00 6.00 Total: -1.00 -31.90 397.95 -8.95 -40.85 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -8.67 Total: 4.95 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: -0.12 Total: 1.52 kcal Atomic # 7 Polarization: -47.43 SS G_CDS: -0.52 Total: -47.95 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: -0.61 Total: -21.53 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.90 -8.95 -40.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566686819.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.805 kcal (2) G-P(sol) polarization free energy of solvation -31.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds