Wall clock time and date at job start Tue Mar 31 2020 15:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45198 * 109.47088 * 2 1 4 4 C 1.34228 * 116.99835 * 180.02562 * 3 2 1 5 5 O 1.20823 * 120.00181 * 359.97438 * 4 3 2 6 6 C 1.50709 * 119.99875 * 180.02562 * 4 3 2 7 7 H 1.09000 * 109.52679 * 60.07393 * 6 4 3 8 8 C 1.53035 * 109.49752 * 180.16148 * 6 4 3 9 9 C 1.53042 * 109.53792 * 181.31569 * 8 6 4 10 10 C 1.53622 * 109.23972 * 298.50370 * 9 8 6 11 11 N 1.46928 * 108.54262 * 54.85853 * 10 9 8 12 12 C 1.34774 * 120.63186 * 126.36714 * 11 10 9 13 13 O 1.21287 * 120.00085 * 179.72053 * 12 11 10 14 14 C 1.50699 * 119.99712 * 359.72257 * 12 11 10 15 15 N 1.46910 * 109.46711 * 179.97438 * 14 12 11 16 16 C 1.46901 * 110.99655 * 184.76434 * 15 14 12 17 17 H 1.09005 * 109.47329 * 325.21364 * 16 15 14 18 18 C 1.50701 * 109.47273 * 85.21336 * 16 15 14 19 19 H 1.07999 * 119.99717 * 359.97438 * 18 16 15 20 20 C 1.37871 * 120.00085 * 179.97438 * 18 16 15 21 21 N 1.31513 * 120.00291 * 359.97438 * 20 18 16 22 22 Si 1.86808 * 119.99875 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.46735 * 269.99693 * 22 20 18 24 24 H 1.48496 * 109.47148 * 29.99503 * 22 20 18 25 25 H 1.48499 * 109.47268 * 149.99787 * 22 20 18 26 26 C 1.53002 * 109.46887 * 205.21303 * 16 15 14 27 27 C 1.52997 * 109.47279 * 65.64572 * 26 16 15 28 28 C 1.46930 * 118.73726 * 306.09464 * 11 10 9 29 29 H 1.08999 * 109.47203 * 300.00158 * 1 2 3 30 30 H 1.09001 * 109.46640 * 60.00425 * 1 2 3 31 31 H 1.09001 * 109.47203 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47203 * 239.99842 * 2 1 3 33 33 H 1.08998 * 109.46980 * 119.99962 * 2 1 3 34 34 H 1.09006 * 109.45736 * 301.32637 * 8 6 4 35 35 H 1.09001 * 109.46655 * 61.29022 * 8 6 4 36 36 H 1.08999 * 109.49838 * 58.57856 * 9 8 6 37 37 H 1.09006 * 109.49801 * 178.68099 * 9 8 6 38 38 H 1.09002 * 109.74488 * 295.12288 * 10 9 8 39 39 H 1.09001 * 109.66587 * 174.55074 * 10 9 8 40 40 H 1.08999 * 109.47449 * 60.00425 * 14 12 11 41 41 H 1.09000 * 109.47321 * 299.99217 * 14 12 11 42 42 H 1.00898 * 110.99664 * 60.81375 * 15 14 12 43 43 H 0.96996 * 120.00305 * 179.97438 * 21 20 18 44 44 H 1.08999 * 109.46862 * 185.64046 * 26 16 15 45 45 H 1.08994 * 109.47140 * 305.64372 * 26 16 15 46 46 H 1.09003 * 109.46814 * 294.28906 * 27 26 16 47 47 H 1.08996 * 109.47430 * 54.28124 * 27 26 16 48 48 H 1.09001 * 109.47479 * 174.28933 * 27 26 16 49 49 H 1.08998 * 109.58852 * 173.64771 * 28 11 10 50 50 H 1.09007 * 109.58334 * 293.93010 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 0.0000 7 1 3.5868 3.4695 0.8908 8 6 5.4490 2.8580 -0.0048 9 6 6.0351 4.2714 0.0288 10 6 5.5871 5.0352 -1.2265 11 7 4.1203 4.9922 -1.3011 12 6 3.4051 6.1283 -1.4196 13 8 2.1950 6.0791 -1.4853 14 6 4.1090 7.4598 -1.4706 15 7 3.1155 8.5341 -1.6014 16 6 3.7699 9.8388 -1.7678 17 1 4.6897 9.8611 -1.1834 18 6 4.0941 10.0562 -3.2233 19 1 3.8400 9.3006 -3.9519 20 6 4.7153 11.2198 -3.6249 21 7 5.0243 12.1401 -2.7378 22 14 5.1166 11.4895 -5.4293 23 1 6.4728 10.9587 -5.7194 24 1 4.1177 10.7817 -6.2698 25 1 5.0783 12.9426 -5.7331 26 6 2.8310 10.9456 -1.2836 27 6 2.6139 10.8067 0.2245 28 6 3.4484 3.6865 -1.2501 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 5.7866 2.3041 0.8712 35 1 5.7834 2.3477 -0.9081 36 1 5.6812 4.7909 0.9194 37 1 7.1234 4.2136 0.0490 38 1 6.0119 4.5663 -2.1141 39 1 5.9195 6.0714 -1.1636 40 1 4.7826 7.4822 -2.3273 41 1 4.6815 7.6036 -0.5542 42 1 2.4866 8.5430 -0.8125 43 1 5.4617 12.9586 -3.0203 44 1 3.2742 11.9179 -1.4988 45 1 1.8737 10.8608 -1.7978 46 1 2.0793 9.8795 0.4307 47 1 3.5791 10.7897 0.7306 48 1 2.0285 11.6519 0.5868 49 1 2.3693 3.8324 -1.2027 50 1 3.7005 3.1108 -2.1407 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566686819.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:37 Heat of formation + Delta-G solvation = -149.989847 kcal Electronic energy + Delta-G solvation = -28586.209365 eV Core-core repulsion = 24612.280678 eV Total energy + Delta-G solvation = -3973.928687 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.95239 -40.96434 -38.68463 -37.85024 -37.52547 -34.52059 -34.08790 -32.99207 -32.80957 -32.04270 -29.14873 -27.51414 -26.32050 -25.35300 -24.21115 -23.95797 -22.72290 -21.48671 -21.28668 -20.00344 -18.79503 -18.44411 -18.13896 -17.80866 -17.27238 -17.07492 -16.69637 -16.46211 -15.93479 -15.58999 -15.39197 -15.11270 -14.76560 -14.69565 -14.57873 -14.32750 -14.04301 -13.81289 -13.67791 -13.59517 -13.49747 -13.10103 -12.96957 -12.89211 -12.72234 -12.62833 -12.52836 -12.49812 -12.03863 -12.01302 -11.96280 -11.73268 -11.67529 -11.55707 -11.54797 -11.48863 -11.03454 -10.69431 -10.40367 -9.73099 -8.98860 -8.04429 -6.16107 0.98722 1.42839 1.45744 1.53665 1.55861 1.63664 1.96232 2.46558 3.20697 3.41852 3.49961 3.66705 3.68839 3.83282 3.97321 3.98305 4.03958 4.07788 4.13612 4.31967 4.41948 4.47470 4.51633 4.54408 4.58415 4.61391 4.70267 4.73744 4.75841 4.82898 4.86930 4.89574 5.03126 5.07089 5.11745 5.12618 5.24534 5.33103 5.37603 5.39631 5.48543 5.59610 5.76583 5.89337 6.24294 6.38168 6.52010 6.60802 6.92346 6.96606 7.20620 7.52874 8.98538 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.017185 B = 0.002555 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.919408 B =10958.343810 C =11357.738997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.053 3.947 3 O -0.364 6.364 4 C 0.475 3.525 5 O -0.527 6.527 6 C -0.088 4.088 7 H 0.118 0.882 8 C -0.099 4.099 9 C -0.125 4.125 10 C 0.094 3.906 11 N -0.610 5.610 12 C 0.520 3.480 13 O -0.564 6.564 14 C 0.057 3.943 15 N -0.683 5.683 16 C 0.228 3.772 17 H -0.016 1.016 18 C -0.513 4.513 19 H 0.046 0.954 20 C 0.015 3.985 21 N -0.916 5.916 22 Si 0.952 3.048 23 H -0.273 1.273 24 H -0.277 1.277 25 H -0.284 1.284 26 C -0.122 4.122 27 C -0.139 4.139 28 C 0.126 3.874 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.102 0.898 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.108 0.892 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.067 0.933 42 H 0.331 0.669 43 H 0.261 0.739 44 H 0.073 0.927 45 H 0.030 0.970 46 H 0.051 0.949 47 H 0.043 0.957 48 H 0.056 0.944 49 H 0.085 0.915 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.203 -21.947 8.807 23.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.020 4.020 3 O -0.281 6.281 4 C 0.318 3.682 5 O -0.416 6.416 6 C -0.108 4.108 7 H 0.136 0.864 8 C -0.136 4.136 9 C -0.163 4.163 10 C -0.028 4.028 11 N -0.345 5.345 12 C 0.309 3.691 13 O -0.442 6.442 14 C -0.076 4.076 15 N -0.316 5.316 16 C 0.121 3.879 17 H 0.001 0.999 18 C -0.551 4.551 19 H 0.064 0.936 20 C -0.184 4.184 21 N -0.556 5.556 22 Si 0.779 3.221 23 H -0.199 1.199 24 H -0.202 1.202 25 H -0.210 1.210 26 C -0.161 4.161 27 C -0.197 4.197 28 C 0.003 3.997 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.121 0.879 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.126 0.874 38 H 0.105 0.895 39 H 0.113 0.887 40 H 0.115 0.885 41 H 0.085 0.915 42 H 0.149 0.851 43 H 0.070 0.930 44 H 0.091 0.909 45 H 0.049 0.951 46 H 0.070 0.930 47 H 0.062 0.938 48 H 0.075 0.925 49 H 0.104 0.896 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.262 -22.194 8.100 23.627 hybrid contribution 0.474 0.367 -0.145 0.617 sum 0.212 -21.827 7.955 23.232 Atomic orbital electron populations 1.21842 0.90920 1.04374 1.03528 1.23307 0.96839 0.79020 1.02821 1.86567 1.24203 1.34013 1.83315 1.23721 0.80647 0.92407 0.71382 1.90648 1.60898 1.43661 1.46356 1.21487 0.98364 0.89027 1.01901 0.86381 1.21439 0.89912 0.98036 1.04238 1.21991 1.02686 0.94085 0.97492 1.22215 0.77496 1.03217 0.99837 1.48117 1.08246 1.04921 1.73196 1.20967 0.87248 0.86181 0.74662 1.90645 1.15719 1.87363 1.50487 1.21719 0.94870 0.88529 1.02470 1.60236 1.19484 1.04291 1.47602 1.18968 0.90497 0.83874 0.94600 0.99874 1.21426 1.37096 1.02624 0.93985 0.93578 1.25605 0.95856 0.95797 1.01142 1.69976 1.42476 1.08532 1.34639 0.85645 0.78489 0.77030 0.80959 1.19851 1.20230 1.20962 1.21608 0.98096 1.02220 0.94190 1.21746 1.00520 1.01000 0.96396 1.21332 0.98891 0.83254 0.96209 0.91464 0.91749 0.87944 0.91055 0.90810 0.90049 0.90691 0.90936 0.87361 0.89525 0.88695 0.88538 0.91512 0.85057 0.92974 0.90906 0.95076 0.92974 0.93771 0.92480 0.89629 0.90406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 10.29 71.98 0.74 -0.95 16 2 C 0.05 0.83 6.19 71.98 0.45 1.28 16 3 O -0.36 -7.56 10.15 -51.39 -0.52 -8.08 16 4 C 0.48 10.00 7.26 71.24 0.52 10.52 16 5 O -0.53 -12.96 15.73 21.97 0.35 -12.61 16 6 C -0.09 -1.61 2.78 -11.46 -0.03 -1.64 16 7 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 8 C -0.10 -1.47 4.46 30.62 0.14 -1.33 16 9 C -0.12 -1.62 6.10 30.82 0.19 -1.43 16 10 C 0.09 1.65 6.37 86.51 0.55 2.20 16 11 N -0.61 -14.98 2.97 -818.04 -2.43 -17.41 16 12 C 0.52 17.43 7.75 87.66 0.68 18.11 16 13 O -0.56 -23.26 15.72 -3.05 -0.05 -23.31 16 14 C 0.06 2.01 4.28 85.55 0.37 2.38 16 15 N -0.68 -29.84 5.84 -499.43 -2.92 -32.76 16 16 C 0.23 11.26 2.02 44.17 0.09 11.35 16 17 H -0.02 -0.85 7.85 -2.38 -0.02 -0.87 16 18 C -0.51 -28.18 8.55 25.60 0.22 -27.96 16 19 H 0.05 2.62 7.81 -2.91 -0.02 2.60 16 20 C 0.01 0.79 5.29 84.65 0.45 1.24 16 21 N -0.92 -51.30 11.29 21.44 0.24 -51.06 16 22 Si 0.95 43.56 29.54 68.60 2.03 45.59 16 23 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 24 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 25 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 26 C -0.12 -5.81 5.36 30.59 0.16 -5.64 16 27 C -0.14 -5.24 9.64 71.98 0.69 -4.54 16 28 C 0.13 2.82 5.64 86.36 0.49 3.31 16 29 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.07 1.08 8.13 -2.39 -0.02 1.06 16 33 H 0.07 1.07 8.13 -2.39 -0.02 1.05 16 34 H 0.08 1.16 8.07 -2.38 -0.02 1.14 16 35 H 0.07 1.15 8.13 -2.39 -0.02 1.13 16 36 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.11 0.96 8.14 -2.38 -0.02 0.95 16 38 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.09 1.72 5.93 -2.39 -0.01 1.71 16 40 H 0.10 3.57 7.72 -2.39 -0.02 3.55 16 41 H 0.07 2.08 7.70 -2.39 -0.02 2.06 16 42 H 0.33 13.76 6.47 -89.70 -0.58 13.18 16 43 H 0.26 13.95 8.31 -92.71 -0.77 13.18 16 44 H 0.07 3.87 5.94 -2.39 -0.01 3.86 16 45 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.05 1.79 6.65 -2.39 -0.02 1.77 16 47 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 48 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 49 H 0.09 2.30 7.01 -2.39 -0.02 2.29 16 50 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 Total: -1.00 -69.08 397.95 2.74 -66.34 By element: Atomic # 1 Polarization: 26.06 SS G_CDS: 0.34 Total: 26.40 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: 5.69 Total: 6.89 kcal Atomic # 7 Polarization: -96.12 SS G_CDS: -5.10 Total: -101.22 kcal Atomic # 8 Polarization: -43.77 SS G_CDS: -0.22 Total: -44.00 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -69.08 2.74 -66.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566686819.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.648 kcal (2) G-P(sol) polarization free energy of solvation -69.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds