Wall clock time and date at job start Tue Mar 31 2020 15:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47226 * 2 1 4 4 H 1.08998 * 109.47206 * 184.42457 * 3 2 1 5 5 C 1.50700 * 109.47028 * 304.42961 * 3 2 1 6 6 H 1.08001 * 120.00104 * 115.15392 * 5 3 2 7 7 C 1.37876 * 120.00107 * 295.14629 * 5 3 2 8 8 N 1.31517 * 119.99656 * 352.99981 * 7 5 3 9 9 Si 1.86800 * 119.99982 * 172.99248 * 7 5 3 10 10 H 1.48500 * 109.46880 * 180.02562 * 9 7 5 11 11 H 1.48501 * 109.47011 * 300.00388 * 9 7 5 12 12 H 1.48493 * 109.47104 * 60.00536 * 9 7 5 13 13 N 1.46899 * 109.46614 * 64.42722 * 3 2 1 14 14 C 1.46900 * 111.00279 * 85.23488 * 13 3 2 15 15 C 1.50698 * 109.47455 * 185.44520 * 14 13 3 16 16 O 1.21283 * 119.99804 * 359.97438 * 15 14 13 17 17 N 1.34771 * 119.99833 * 179.97438 * 15 14 13 18 18 C 1.46505 * 119.99861 * 179.97438 * 17 15 14 19 19 C 1.50704 * 109.47112 * 59.99725 * 18 17 15 20 20 O 1.20835 * 119.99805 * 145.00157 * 19 18 17 21 21 O 1.34226 * 120.00277 * 325.00236 * 19 18 17 22 22 C 1.45191 * 117.00288 * 179.97438 * 21 19 18 23 23 C 1.52999 * 109.47139 * 299.99785 * 18 17 15 24 24 C 1.53001 * 109.47204 * 300.00399 * 23 18 17 25 25 C 1.53006 * 109.46768 * 299.99762 * 24 23 18 26 26 C 1.52993 * 109.47241 * 59.99908 * 25 24 23 27 27 C 1.52997 * 109.47194 * 179.97438 * 18 17 15 28 28 H 1.08997 * 109.47216 * 305.52528 * 1 2 3 29 29 H 1.09003 * 109.46973 * 65.52887 * 1 2 3 30 30 H 1.09002 * 109.46990 * 185.52551 * 1 2 3 31 31 H 1.09010 * 109.47229 * 240.00457 * 2 1 3 32 32 H 1.08996 * 109.47236 * 120.00904 * 2 1 3 33 33 H 0.96997 * 120.00467 * 356.26666 * 8 7 5 34 34 H 1.00902 * 111.00031 * 209.18979 * 13 3 2 35 35 H 1.09008 * 109.46899 * 305.43950 * 14 13 3 36 36 H 1.08995 * 109.47408 * 65.43630 * 14 13 3 37 37 H 0.96996 * 120.00938 * 359.97438 * 17 15 14 38 38 H 1.08999 * 109.47676 * 299.99911 * 22 21 19 39 39 H 1.09001 * 109.47443 * 59.99837 * 22 21 19 40 40 H 1.09000 * 109.47564 * 180.02562 * 22 21 19 41 41 H 1.09000 * 109.46829 * 59.99658 * 23 18 17 42 42 H 1.08992 * 109.47393 * 179.97438 * 23 18 17 43 43 H 1.08997 * 109.47179 * 179.97438 * 24 23 18 44 44 H 1.08992 * 109.47397 * 59.99450 * 24 23 18 45 45 H 1.09004 * 109.46636 * 300.00272 * 25 24 23 46 46 H 1.08994 * 109.46987 * 180.02562 * 25 24 23 47 47 H 1.08998 * 109.47402 * 179.97438 * 26 25 24 48 48 H 1.09002 * 109.47283 * 60.00143 * 26 25 24 49 49 H 1.09007 * 109.47141 * 180.02562 * 27 18 17 50 50 H 1.09008 * 109.47139 * 299.99424 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1271 1.4435 -0.0793 5 6 1.4501 2.1839 -1.1719 6 1 0.7759 3.0107 -1.0039 7 6 1.7711 1.8067 -2.4586 8 7 2.6949 0.8937 -2.6651 9 14 0.8939 2.5924 -3.9086 10 1 1.4170 2.0179 -5.1741 11 1 -0.5635 2.3251 -3.8094 12 1 1.1303 4.0583 -3.8950 13 7 1.6396 2.1034 1.2493 14 6 2.6070 1.8335 2.3213 15 6 2.0973 2.4128 3.6157 16 8 1.0331 2.9939 3.6425 17 7 2.8241 2.2853 4.7435 18 6 2.3288 2.8490 6.0018 19 6 1.0050 2.2178 6.3484 20 8 0.7185 2.0108 7.5039 21 8 0.1441 1.8856 5.3736 22 6 -1.1116 1.2811 5.7809 23 6 2.1483 4.3605 5.8473 24 6 3.4923 5.0013 5.4953 25 6 4.4997 4.7195 6.6120 26 6 4.6802 3.2081 6.7664 27 6 3.3359 2.5667 7.1184 28 1 -0.3633 0.5971 0.8363 29 1 -0.3633 0.4257 -0.9354 30 1 -0.3633 -1.0229 0.0990 31 1 1.8934 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 3.1884 0.5249 -1.9158 34 1 1.5203 3.0958 1.1114 35 1 2.7364 0.7567 2.4313 36 1 3.5642 2.2906 2.0705 37 1 3.6751 1.8203 4.7222 38 1 -0.9111 0.3565 6.3221 39 1 -1.6538 1.9706 6.4279 40 1 -1.7125 1.0619 4.8983 41 1 1.4307 4.5612 5.0518 42 1 1.7794 4.7799 6.7833 43 1 3.3636 6.0780 5.3849 44 1 3.8608 4.5819 4.5593 45 1 4.1311 5.1389 7.5481 46 1 5.4570 5.1764 6.3615 47 1 5.3981 3.0073 7.5616 48 1 5.0487 2.7886 5.8303 49 1 2.9671 2.9857 8.0548 50 1 3.4640 1.4898 7.2284 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568182534.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:03 Heat of formation + Delta-G solvation = -132.512581 kcal Electronic energy + Delta-G solvation = -30099.990441 eV Core-core repulsion = 26126.819624 eV Total energy + Delta-G solvation = -3973.170816 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.31825 -39.37077 -38.04641 -36.39428 -36.13041 -33.83266 -32.72804 -31.18005 -30.88611 -30.26036 -27.69631 -26.96922 -24.51311 -23.85960 -23.41042 -23.07275 -21.04895 -20.72712 -19.28676 -19.19053 -17.83486 -17.58925 -16.87216 -16.39806 -16.28254 -15.64323 -15.31097 -14.77481 -14.35775 -14.26822 -13.96847 -13.80270 -13.65821 -13.43531 -13.29760 -13.04154 -12.96434 -12.64330 -12.53189 -12.44431 -12.05444 -11.98328 -11.70732 -11.59440 -11.43929 -11.10861 -11.07165 -10.89844 -10.77404 -10.67015 -10.58011 -10.28442 -10.15169 -10.09192 -9.99351 -9.68105 -9.29861 -9.06390 -8.52377 -8.32562 -7.38197 -6.35780 -4.06232 2.07308 2.69035 3.03838 3.14244 3.44478 3.47186 3.64858 4.17449 4.38056 4.49494 4.52381 4.77929 4.78506 4.95167 5.04309 5.14293 5.16828 5.18300 5.23373 5.26536 5.34813 5.38146 5.41057 5.58545 5.63852 5.69473 5.77477 5.78373 5.78961 5.81232 5.91934 6.06918 6.11709 6.30192 6.36259 6.44176 6.47247 6.62935 6.94124 7.04631 7.29227 7.43557 7.54142 7.59997 7.74892 7.86769 8.09364 8.46693 8.54786 8.59472 8.86471 9.63275 11.01126 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.016466 B = 0.003336 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.088253 B = 8390.202681 C = 9216.513174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.104 4.104 3 C 0.205 3.795 4 H -0.008 1.008 5 C -0.592 4.592 6 H 0.055 0.945 7 C 0.025 3.975 8 N -0.910 5.910 9 Si 1.064 2.936 10 H -0.284 1.284 11 H -0.287 1.287 12 H -0.289 1.289 13 N -0.659 5.659 14 C 0.045 3.955 15 C 0.512 3.488 16 O -0.485 6.485 17 N -0.732 5.732 18 C 0.198 3.802 19 C 0.458 3.542 20 O -0.519 6.519 21 O -0.310 6.310 22 C 0.032 3.968 23 C -0.129 4.129 24 C -0.112 4.112 25 C -0.122 4.122 26 C -0.118 4.118 27 C -0.112 4.112 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.015 0.985 31 H 0.058 0.942 32 H 0.018 0.982 33 H 0.269 0.731 34 H 0.343 0.657 35 H 0.090 0.910 36 H 0.046 0.954 37 H 0.401 0.599 38 H 0.055 0.945 39 H 0.057 0.943 40 H 0.102 0.898 41 H 0.097 0.903 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.068 0.932 45 H 0.063 0.937 46 H 0.065 0.935 47 H 0.071 0.929 48 H 0.066 0.934 49 H 0.090 0.910 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.579 3.713 19.838 20.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.143 4.143 3 C 0.098 3.902 4 H 0.009 0.991 5 C -0.630 4.630 6 H 0.073 0.927 7 C -0.180 4.180 8 N -0.547 5.547 9 Si 0.892 3.108 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.216 1.216 13 N -0.292 5.292 14 C -0.088 4.088 15 C 0.299 3.701 16 O -0.356 6.356 17 N -0.390 5.390 18 C 0.109 3.891 19 C 0.299 3.701 20 O -0.408 6.408 21 O -0.224 6.224 22 C -0.062 4.062 23 C -0.168 4.168 24 C -0.150 4.150 25 C -0.159 4.159 26 C -0.155 4.155 27 C -0.150 4.150 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.034 0.966 31 H 0.076 0.924 32 H 0.036 0.964 33 H 0.081 0.919 34 H 0.161 0.839 35 H 0.108 0.892 36 H 0.063 0.937 37 H 0.237 0.763 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.120 0.880 41 H 0.115 0.885 42 H 0.091 0.909 43 H 0.086 0.914 44 H 0.087 0.913 45 H 0.082 0.918 46 H 0.084 0.916 47 H 0.090 0.910 48 H 0.085 0.915 49 H 0.109 0.891 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.084 3.522 18.671 19.114 hybrid contribution 1.085 0.085 1.621 1.953 sum 3.169 3.607 20.292 20.852 Atomic orbital electron populations 1.21422 0.96377 0.97464 1.02380 1.21483 0.96546 0.98119 0.98154 1.19268 0.93040 0.91810 0.86129 0.99052 1.21927 1.31046 1.18374 0.91688 0.92703 1.25677 0.96353 0.95892 1.00049 1.70802 1.21313 1.27052 1.35490 0.83614 0.75838 0.75514 0.75797 1.20924 1.21342 1.21563 1.60267 1.45181 1.17081 1.06648 1.21765 0.95185 1.01256 0.90602 1.20984 0.84510 0.79832 0.84809 1.90672 1.20578 1.39488 1.84820 1.46190 1.25108 1.60454 1.07221 1.20048 0.88202 0.94504 0.86332 1.24211 0.86883 0.75025 0.83939 1.90635 1.77421 1.51366 1.21383 1.86975 1.27631 1.70755 1.37026 1.23261 0.83712 0.97273 1.01981 1.21955 0.99890 0.90992 1.03932 1.21448 0.94036 1.00532 0.98959 1.21587 0.99461 0.95731 0.99164 1.21558 0.95961 0.95912 1.02097 1.21728 0.94100 1.02029 0.97102 0.92756 0.92480 0.96624 0.92365 0.96371 0.91928 0.83863 0.89238 0.93654 0.76306 0.92591 0.92388 0.87993 0.88502 0.90907 0.91365 0.91339 0.91789 0.91594 0.91012 0.91490 0.89112 0.90743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.66 9.43 37.16 0.35 -2.31 16 2 C -0.10 -2.41 5.51 -26.73 -0.15 -2.56 16 3 C 0.21 4.90 1.93 -68.86 -0.13 4.77 16 4 H -0.01 -0.20 7.22 -51.93 -0.37 -0.58 16 5 C -0.59 -15.78 7.13 -34.44 -0.25 -16.03 16 6 H 0.05 1.49 7.67 -52.49 -0.40 1.09 16 7 C 0.02 0.68 5.26 -17.82 -0.09 0.59 16 8 N -0.91 -26.25 12.94 55.43 0.72 -25.54 16 9 Si 1.06 24.67 29.91 -169.99 -5.08 19.59 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 13 N -0.66 -13.68 5.17 -109.22 -0.56 -14.25 16 14 C 0.05 0.74 5.94 -4.98 -0.03 0.71 16 15 C 0.51 7.74 6.82 -10.99 -0.07 7.67 16 16 O -0.48 -8.80 11.57 -18.95 -0.22 -9.02 16 17 N -0.73 -8.31 4.03 -48.68 -0.20 -8.50 16 18 C 0.20 2.26 0.63 -132.97 -0.08 2.17 16 19 C 0.46 6.61 6.71 36.01 0.24 6.85 16 20 O -0.52 -8.11 15.84 -18.76 -0.30 -8.40 16 21 O -0.31 -4.90 6.72 -47.36 -0.32 -5.21 16 22 C 0.03 0.41 10.56 101.05 1.07 1.47 16 23 C -0.13 -1.45 4.50 -26.73 -0.12 -1.57 16 24 C -0.11 -1.03 5.77 -26.73 -0.15 -1.19 16 25 C -0.12 -0.88 5.92 -26.73 -0.16 -1.04 16 26 C -0.12 -0.80 5.75 -26.71 -0.15 -0.96 16 27 C -0.11 -0.98 4.32 -26.71 -0.12 -1.09 16 28 H 0.05 1.22 7.59 -51.93 -0.39 0.82 16 29 H 0.06 1.38 7.31 -51.93 -0.38 1.00 16 30 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 1.46 6.35 -51.92 -0.33 1.14 16 32 H 0.02 0.38 7.32 -51.93 -0.38 0.00 16 33 H 0.27 7.72 6.03 -40.82 -0.25 7.47 16 34 H 0.34 7.41 8.15 -39.29 -0.32 7.09 16 35 H 0.09 1.42 7.29 -51.92 -0.38 1.05 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.40 3.51 7.32 -40.82 -0.30 3.21 16 38 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 39 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 40 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 41 H 0.10 1.36 6.17 -51.93 -0.32 1.04 16 42 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.07 0.69 7.60 -51.93 -0.39 0.30 16 45 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 47 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.07 0.43 6.86 -51.93 -0.36 0.08 16 49 H 0.09 0.83 7.87 -51.93 -0.41 0.42 16 50 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 LS Contribution 383.97 15.07 5.79 5.79 Total: -1.00 -31.67 383.97 -8.46 -40.13 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -8.43 Total: 7.93 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: 0.15 Total: -2.52 kcal Atomic # 7 Polarization: -48.24 SS G_CDS: -0.04 Total: -48.29 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: -0.83 Total: -22.63 kcal Atomic # 14 Polarization: 24.67 SS G_CDS: -5.08 Total: 19.59 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.67 -8.46 -40.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568182534.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.381 kcal (2) G-P(sol) polarization free energy of solvation -31.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds