Wall clock time and date at job start Tue Mar 31 2020 15:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47226 * 2 1 4 4 H 1.08998 * 109.47206 * 184.42457 * 3 2 1 5 5 C 1.50700 * 109.47028 * 304.42961 * 3 2 1 6 6 H 1.08001 * 120.00104 * 115.15392 * 5 3 2 7 7 C 1.37876 * 120.00107 * 295.14629 * 5 3 2 8 8 N 1.31517 * 119.99656 * 352.99981 * 7 5 3 9 9 Si 1.86800 * 119.99982 * 172.99248 * 7 5 3 10 10 H 1.48500 * 109.46880 * 180.02562 * 9 7 5 11 11 H 1.48501 * 109.47011 * 300.00388 * 9 7 5 12 12 H 1.48493 * 109.47104 * 60.00536 * 9 7 5 13 13 N 1.46899 * 109.46614 * 64.42722 * 3 2 1 14 14 C 1.46900 * 111.00279 * 85.23488 * 13 3 2 15 15 C 1.50698 * 109.47455 * 185.44520 * 14 13 3 16 16 O 1.21283 * 119.99804 * 359.97438 * 15 14 13 17 17 N 1.34771 * 119.99833 * 179.97438 * 15 14 13 18 18 C 1.46505 * 119.99861 * 179.97438 * 17 15 14 19 19 C 1.50704 * 109.47112 * 59.99725 * 18 17 15 20 20 O 1.20835 * 119.99805 * 145.00157 * 19 18 17 21 21 O 1.34226 * 120.00277 * 325.00236 * 19 18 17 22 22 C 1.45191 * 117.00288 * 179.97438 * 21 19 18 23 23 C 1.52999 * 109.47139 * 299.99785 * 18 17 15 24 24 C 1.53001 * 109.47204 * 300.00399 * 23 18 17 25 25 C 1.53006 * 109.46768 * 299.99762 * 24 23 18 26 26 C 1.52993 * 109.47241 * 59.99908 * 25 24 23 27 27 C 1.52997 * 109.47194 * 179.97438 * 18 17 15 28 28 H 1.08997 * 109.47216 * 305.52528 * 1 2 3 29 29 H 1.09003 * 109.46973 * 65.52887 * 1 2 3 30 30 H 1.09002 * 109.46990 * 185.52551 * 1 2 3 31 31 H 1.09010 * 109.47229 * 240.00457 * 2 1 3 32 32 H 1.08996 * 109.47236 * 120.00904 * 2 1 3 33 33 H 0.96997 * 120.00467 * 356.26666 * 8 7 5 34 34 H 1.00902 * 111.00031 * 209.18979 * 13 3 2 35 35 H 1.09008 * 109.46899 * 305.43950 * 14 13 3 36 36 H 1.08995 * 109.47408 * 65.43630 * 14 13 3 37 37 H 0.96996 * 120.00938 * 359.97438 * 17 15 14 38 38 H 1.08999 * 109.47676 * 299.99911 * 22 21 19 39 39 H 1.09001 * 109.47443 * 59.99837 * 22 21 19 40 40 H 1.09000 * 109.47564 * 180.02562 * 22 21 19 41 41 H 1.09000 * 109.46829 * 59.99658 * 23 18 17 42 42 H 1.08992 * 109.47393 * 179.97438 * 23 18 17 43 43 H 1.08997 * 109.47179 * 179.97438 * 24 23 18 44 44 H 1.08992 * 109.47397 * 59.99450 * 24 23 18 45 45 H 1.09004 * 109.46636 * 300.00272 * 25 24 23 46 46 H 1.08994 * 109.46987 * 180.02562 * 25 24 23 47 47 H 1.08998 * 109.47402 * 179.97438 * 26 25 24 48 48 H 1.09002 * 109.47283 * 60.00143 * 26 25 24 49 49 H 1.09007 * 109.47141 * 180.02562 * 27 18 17 50 50 H 1.09008 * 109.47139 * 299.99424 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1271 1.4435 -0.0793 5 6 1.4501 2.1839 -1.1719 6 1 0.7759 3.0107 -1.0039 7 6 1.7711 1.8067 -2.4586 8 7 2.6949 0.8937 -2.6651 9 14 0.8939 2.5924 -3.9086 10 1 1.4170 2.0179 -5.1741 11 1 -0.5635 2.3251 -3.8094 12 1 1.1303 4.0583 -3.8950 13 7 1.6396 2.1034 1.2493 14 6 2.6070 1.8335 2.3213 15 6 2.0973 2.4128 3.6157 16 8 1.0331 2.9939 3.6425 17 7 2.8241 2.2853 4.7435 18 6 2.3288 2.8490 6.0018 19 6 1.0050 2.2178 6.3484 20 8 0.7185 2.0108 7.5039 21 8 0.1441 1.8856 5.3736 22 6 -1.1116 1.2811 5.7809 23 6 2.1483 4.3605 5.8473 24 6 3.4923 5.0013 5.4953 25 6 4.4997 4.7195 6.6120 26 6 4.6802 3.2081 6.7664 27 6 3.3359 2.5667 7.1184 28 1 -0.3633 0.5971 0.8363 29 1 -0.3633 0.4257 -0.9354 30 1 -0.3633 -1.0229 0.0990 31 1 1.8934 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 3.1884 0.5249 -1.9158 34 1 1.5203 3.0958 1.1114 35 1 2.7364 0.7567 2.4313 36 1 3.5642 2.2906 2.0705 37 1 3.6751 1.8203 4.7222 38 1 -0.9111 0.3565 6.3221 39 1 -1.6538 1.9706 6.4279 40 1 -1.7125 1.0619 4.8983 41 1 1.4307 4.5612 5.0518 42 1 1.7794 4.7799 6.7833 43 1 3.3636 6.0780 5.3849 44 1 3.8608 4.5819 4.5593 45 1 4.1311 5.1389 7.5481 46 1 5.4570 5.1764 6.3615 47 1 5.3981 3.0073 7.5616 48 1 5.0487 2.7886 5.8303 49 1 2.9671 2.9857 8.0548 50 1 3.4640 1.4898 7.2284 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568182534.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:02 Heat of formation + Delta-G solvation = -151.675222 kcal Electronic energy + Delta-G solvation = -30100.821395 eV Core-core repulsion = 26126.819624 eV Total energy + Delta-G solvation = -3974.001771 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.35313 -40.52510 -39.10827 -38.01856 -37.37141 -34.81229 -34.54007 -32.64568 -31.89506 -31.37361 -28.70354 -28.61111 -26.22291 -25.30371 -24.80704 -23.81379 -22.13953 -21.73596 -21.06833 -20.15979 -19.22352 -18.86916 -18.16026 -17.59703 -17.44931 -16.75321 -16.61312 -16.00680 -15.65947 -15.58709 -15.27328 -15.22334 -14.94616 -14.76549 -14.49781 -14.37138 -13.86507 -13.78297 -13.56877 -13.42968 -13.35364 -13.25748 -13.13542 -13.00830 -12.92870 -12.60097 -12.20577 -11.98920 -11.95842 -11.93850 -11.83717 -11.77622 -11.56989 -11.53468 -11.29332 -11.18068 -10.60709 -10.54951 -10.32936 -10.12656 -9.06642 -8.52555 -6.22823 0.96899 1.56936 1.63058 1.64138 1.82098 1.88536 2.06826 2.60633 3.25692 3.32765 3.58356 3.62948 3.68566 3.91372 4.08312 4.14234 4.16721 4.21425 4.24394 4.35360 4.38994 4.43654 4.45591 4.51522 4.59311 4.61284 4.61906 4.72553 4.78587 4.94960 5.02851 5.05702 5.13881 5.15623 5.21647 5.23055 5.30948 5.36550 5.40397 5.42057 5.49320 5.55295 5.72772 5.92324 6.13071 6.45257 6.59659 6.64025 6.64906 6.84904 7.38280 7.53518 8.85169 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.016466 B = 0.003336 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.088253 B = 8390.202681 C = 9216.513174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.099 4.099 3 C 0.211 3.789 4 H -0.028 1.028 5 C -0.597 4.597 6 H 0.044 0.956 7 C -0.019 4.019 8 N -0.933 5.933 9 Si 1.104 2.896 10 H -0.286 1.286 11 H -0.277 1.277 12 H -0.274 1.274 13 N -0.663 5.663 14 C 0.045 3.955 15 C 0.519 3.481 16 O -0.517 6.517 17 N -0.712 5.712 18 C 0.199 3.801 19 C 0.451 3.549 20 O -0.535 6.535 21 O -0.333 6.333 22 C 0.027 3.973 23 C -0.126 4.126 24 C -0.109 4.109 25 C -0.119 4.119 26 C -0.114 4.114 27 C -0.106 4.106 28 H 0.051 0.949 29 H 0.032 0.968 30 H 0.039 0.961 31 H 0.034 0.966 32 H 0.039 0.961 33 H 0.260 0.740 34 H 0.335 0.665 35 H 0.098 0.902 36 H 0.061 0.939 37 H 0.417 0.583 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.109 0.891 41 H 0.065 0.935 42 H 0.078 0.922 43 H 0.071 0.929 44 H 0.058 0.942 45 H 0.069 0.931 46 H 0.079 0.921 47 H 0.092 0.908 48 H 0.073 0.927 49 H 0.089 0.911 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.545 3.847 21.210 22.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.138 4.138 3 C 0.102 3.898 4 H -0.011 1.011 5 C -0.635 4.635 6 H 0.063 0.937 7 C -0.218 4.218 8 N -0.571 5.571 9 Si 0.928 3.072 10 H -0.212 1.212 11 H -0.203 1.203 12 H -0.200 1.200 13 N -0.294 5.294 14 C -0.088 4.088 15 C 0.305 3.695 16 O -0.390 6.390 17 N -0.371 5.371 18 C 0.111 3.889 19 C 0.294 3.706 20 O -0.425 6.425 21 O -0.247 6.247 22 C -0.067 4.067 23 C -0.165 4.165 24 C -0.146 4.146 25 C -0.156 4.156 26 C -0.151 4.151 27 C -0.144 4.144 28 H 0.070 0.930 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.153 0.847 35 H 0.116 0.884 36 H 0.079 0.921 37 H 0.256 0.744 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.127 0.873 41 H 0.084 0.916 42 H 0.096 0.904 43 H 0.089 0.911 44 H 0.077 0.923 45 H 0.088 0.912 46 H 0.098 0.902 47 H 0.111 0.889 48 H 0.091 0.909 49 H 0.108 0.892 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.082 3.646 20.085 20.644 hybrid contribution 0.758 0.050 1.286 1.493 sum 3.840 3.696 21.371 22.025 Atomic orbital electron populations 1.21296 0.95695 0.98731 1.00869 1.21380 0.97011 0.97428 0.97957 1.19082 0.91540 0.92328 0.86829 1.01058 1.22184 1.30373 1.18084 0.92899 0.93749 1.26838 0.96388 0.95836 1.02740 1.70902 1.22565 1.28464 1.35148 0.83081 0.75418 0.75622 0.73128 1.21180 1.20266 1.19956 1.60161 1.46745 1.16313 1.06230 1.21806 0.94882 1.02064 0.90025 1.20664 0.84205 0.79416 0.85193 1.90678 1.22050 1.40993 1.85318 1.45909 1.25149 1.59683 1.06315 1.20257 0.87612 0.94255 0.86824 1.24817 0.87558 0.74616 0.83596 1.90614 1.77938 1.52109 1.21858 1.86964 1.28619 1.71039 1.38058 1.23406 0.83115 0.97633 1.02553 1.21904 1.00451 0.91088 1.03038 1.21435 0.93352 1.00436 0.99410 1.21583 0.99317 0.96252 0.98447 1.21582 0.95003 0.95305 1.03203 1.21763 0.94238 1.02695 0.95713 0.92976 0.94890 0.94190 0.94731 0.94240 0.92912 0.84693 0.88379 0.92081 0.74449 0.91764 0.91968 0.87304 0.91628 0.90387 0.91079 0.92286 0.91187 0.90236 0.88909 0.90851 0.89230 0.90146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.78 9.43 71.98 0.68 -4.10 16 2 C -0.10 -4.54 5.51 30.60 0.17 -4.38 16 3 C 0.21 10.11 1.93 44.17 0.09 10.20 16 4 H -0.03 -1.44 7.22 -2.39 -0.02 -1.46 16 5 C -0.60 -32.14 7.13 25.60 0.18 -31.96 16 6 H 0.04 2.44 7.67 -2.91 -0.02 2.42 16 7 C -0.02 -1.02 5.26 84.65 0.45 -0.58 16 8 N -0.93 -54.44 12.94 21.45 0.28 -54.16 16 9 Si 1.10 49.67 29.91 68.60 2.05 51.72 16 10 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 11 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 12 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 13 N -0.66 -27.45 5.17 -499.46 -2.58 -30.03 16 14 C 0.04 1.43 5.94 85.56 0.51 1.94 16 15 C 0.52 15.27 6.82 87.66 0.60 15.87 16 16 O -0.52 -18.83 11.57 20.40 0.24 -18.59 16 17 N -0.71 -15.06 4.03 -426.32 -1.72 -16.78 16 18 C 0.20 4.28 0.63 2.86 0.00 4.28 16 19 C 0.45 12.75 6.71 71.24 0.48 13.23 16 20 O -0.54 -16.33 15.84 21.94 0.35 -15.98 16 21 O -0.33 -10.44 6.72 -43.63 -0.29 -10.73 16 22 C 0.03 0.67 10.56 113.37 1.20 1.87 16 23 C -0.13 -2.75 4.50 30.59 0.14 -2.61 16 24 C -0.11 -1.83 5.77 30.60 0.18 -1.65 16 25 C -0.12 -1.36 5.92 30.59 0.18 -1.18 16 26 C -0.11 -1.16 5.75 30.61 0.18 -0.99 16 27 C -0.11 -1.60 4.32 30.61 0.13 -1.47 16 28 H 0.05 2.29 7.59 -2.39 -0.02 2.27 16 29 H 0.03 1.57 7.31 -2.39 -0.02 1.56 16 30 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.03 1.74 6.35 -2.38 -0.02 1.73 16 32 H 0.04 1.61 7.32 -2.39 -0.02 1.59 16 33 H 0.26 15.22 6.03 -92.71 -0.56 14.66 16 34 H 0.34 14.65 8.15 -89.69 -0.73 13.92 16 35 H 0.10 2.96 7.29 -2.38 -0.02 2.94 16 36 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.42 6.24 7.32 -92.71 -0.68 5.56 16 38 H 0.06 1.48 8.13 -2.39 -0.02 1.46 16 39 H 0.06 1.48 8.13 -2.39 -0.02 1.46 16 40 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 41 H 0.07 1.87 6.17 -2.39 -0.01 1.85 16 42 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.06 1.10 7.60 -2.39 -0.02 1.09 16 45 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 46 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 48 H 0.07 0.68 6.86 -2.39 -0.02 0.66 16 49 H 0.09 1.43 7.87 -2.38 -0.02 1.41 16 50 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 Total: -1.00 -68.77 383.97 3.21 -65.57 By element: Atomic # 1 Polarization: 30.78 SS G_CDS: -0.25 Total: 30.52 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: 5.15 Total: -1.52 kcal Atomic # 7 Polarization: -96.95 SS G_CDS: -4.02 Total: -100.98 kcal Atomic # 8 Polarization: -45.60 SS G_CDS: 0.29 Total: -45.31 kcal Atomic # 14 Polarization: 49.67 SS G_CDS: 2.05 Total: 51.72 kcal Total: -68.77 3.21 -65.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568182534.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.110 kcal (2) G-P(sol) polarization free energy of solvation -68.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds