Wall clock time and date at job start Tue Mar 31 2020 15:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45200 * 109.47421 * 2 1 4 4 C 1.34229 * 116.99791 * 179.97438 * 3 2 1 5 5 O 1.20829 * 120.00317 * 359.97438 * 4 3 2 6 6 C 1.50706 * 119.99820 * 179.97438 * 4 3 2 7 7 H 1.09000 * 109.70121 * 358.35616 * 6 4 3 8 8 C 1.52763 * 109.51083 * 238.23719 * 6 4 3 9 9 C 1.53038 * 109.37831 * 185.70903 * 8 6 4 10 10 C 1.53034 * 109.54229 * 61.24244 * 9 8 6 11 11 C 1.53196 * 109.31256 * 298.63159 * 10 9 8 12 12 N 1.46929 * 108.77490 * 54.63490 * 11 10 9 13 13 C 1.34773 * 120.63364 * 126.36788 * 12 11 10 14 14 O 1.21278 * 120.00490 * 174.32618 * 13 12 11 15 15 C 1.50705 * 119.99550 * 354.32880 * 13 12 11 16 16 N 1.46904 * 109.46664 * 179.97438 * 15 13 12 17 17 C 1.46901 * 110.99612 * 184.65468 * 16 15 13 18 18 H 1.09005 * 109.47172 * 320.97856 * 17 16 15 19 19 C 1.50699 * 109.47281 * 80.97740 * 17 16 15 20 20 H 1.08010 * 120.00002 * 0.02562 * 19 17 16 21 21 C 1.37869 * 120.00158 * 179.97438 * 19 17 16 22 22 N 1.31517 * 120.00349 * 0.02562 * 21 19 17 23 23 Si 1.86809 * 120.00152 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.46817 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46789 * 120.00296 * 23 21 19 26 26 H 1.48499 * 109.47056 * 239.99969 * 23 21 19 27 27 C 1.53002 * 109.46816 * 200.97612 * 17 16 15 28 28 C 1.53004 * 109.47109 * 65.71175 * 27 17 16 29 29 H 1.08995 * 109.47586 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47155 * 300.00744 * 1 2 3 31 31 H 1.09004 * 109.46328 * 59.99992 * 1 2 3 32 32 H 1.09003 * 109.47403 * 239.99491 * 2 1 3 33 33 H 1.09000 * 109.46790 * 120.00167 * 2 1 3 34 34 H 1.08994 * 109.55975 * 65.67003 * 8 6 4 35 35 H 1.09004 * 109.38477 * 305.63435 * 8 6 4 36 36 H 1.08999 * 109.46184 * 301.21710 * 9 8 6 37 37 H 1.09001 * 109.45436 * 181.26162 * 9 8 6 38 38 H 1.08998 * 109.49913 * 178.67763 * 10 9 8 39 39 H 1.08998 * 109.49936 * 58.58131 * 10 9 8 40 40 H 1.08997 * 109.58314 * 294.84793 * 11 10 9 41 41 H 1.08995 * 109.58793 * 174.42106 * 11 10 9 42 42 H 1.09003 * 109.46930 * 59.99825 * 15 13 12 43 43 H 1.08999 * 109.47521 * 299.99964 * 15 13 12 44 44 H 1.00893 * 111.00138 * 308.60663 * 16 15 13 45 45 H 0.96992 * 120.00627 * 179.97438 * 22 21 19 46 46 H 1.09001 * 109.46619 * 185.70361 * 27 17 16 47 47 H 1.08997 * 109.47235 * 305.70881 * 27 17 16 48 48 H 1.08996 * 109.47434 * 64.91829 * 28 27 17 49 49 H 1.08996 * 109.47168 * 184.92584 * 28 27 17 50 50 H 1.09001 * 109.46786 * 304.92329 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0808 0.5864 0.0015 6 6 3.9209 2.9373 0.0000 7 1 3.1135 3.6689 -0.0303 8 6 4.8169 3.1183 -1.2239 9 6 5.5116 4.4798 -1.1478 10 6 6.3865 4.5386 0.1063 11 6 5.5039 4.3762 1.3479 12 7 4.7230 3.1388 1.2144 13 6 4.7465 2.2039 2.1849 14 8 4.0200 1.2356 2.1118 15 6 5.6756 2.3619 3.3609 16 7 5.5120 1.2203 4.2709 17 6 6.3218 1.3940 5.4842 18 1 7.2819 1.8374 5.2198 19 6 5.5977 2.3005 6.4459 20 1 4.6322 2.7067 6.1824 21 6 6.1671 2.6106 7.6626 22 7 7.3425 2.1157 7.9838 23 14 5.2692 3.7337 8.8551 24 1 3.9747 4.1532 8.2605 25 1 5.0177 3.0070 10.1255 26 1 6.1013 4.9332 9.1273 27 6 6.5527 0.0323 6.1424 28 6 7.4105 -0.8396 5.2232 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5139 -0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 4.2123 3.0683 -2.1294 35 1 5.5671 2.3276 -1.2433 36 1 4.7607 5.2687 -1.1042 37 1 6.1340 4.6197 -2.0317 38 1 6.8992 5.4997 0.1475 39 1 7.1218 3.7347 0.0751 40 1 4.8283 5.2277 1.4298 41 1 6.1314 4.3182 2.2372 42 1 5.4383 3.2848 3.8900 43 1 6.7060 2.4004 3.0074 44 1 4.5402 1.0785 4.5020 45 1 7.7434 2.3341 8.8396 46 1 7.0657 0.1712 7.0941 47 1 5.5933 -0.4555 6.3146 48 1 8.4007 -0.3956 5.1213 49 1 7.5022 -1.8380 5.6510 50 1 6.9396 -0.9064 4.2424 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570643552.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:13 Heat of formation + Delta-G solvation = -123.667223 kcal Electronic energy + Delta-G solvation = -29759.948138 eV Core-core repulsion = 25787.160885 eV Total energy + Delta-G solvation = -3972.787253 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.05428 -39.22021 -37.51747 -36.25683 -35.81995 -33.08850 -32.51310 -32.04314 -31.33168 -30.93112 -27.48415 -26.15513 -24.75841 -24.36423 -22.92605 -22.45358 -21.05193 -20.88780 -19.59692 -18.83153 -17.76425 -16.89772 -16.65663 -16.46849 -15.80677 -15.68226 -15.24178 -14.75943 -14.49842 -14.36688 -14.07682 -13.85517 -13.64328 -13.52908 -13.14397 -13.00671 -12.88063 -12.63135 -12.42060 -12.03002 -11.90515 -11.78537 -11.66446 -11.47904 -11.34690 -11.24979 -11.16130 -11.08947 -10.93669 -10.88096 -10.64434 -10.34063 -10.17365 -10.02187 -9.67371 -9.56765 -9.23483 -9.05758 -8.69329 -8.40045 -7.27349 -6.01986 -4.16296 2.27848 2.74623 2.94013 3.16993 3.23479 3.32583 3.35705 4.36672 4.42304 4.54528 4.60507 4.76218 4.86930 4.94137 4.96158 5.00937 5.06652 5.22005 5.24561 5.33025 5.36373 5.48682 5.50193 5.55222 5.66385 5.68720 5.78137 5.81315 5.81945 5.92186 5.95852 6.07766 6.14528 6.37147 6.44415 6.57934 6.72378 6.76628 7.11377 7.24225 7.32280 7.43743 7.59322 7.76394 8.06222 8.07962 8.11823 8.28048 8.42631 8.63971 8.96582 9.51897 10.97311 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.011590 B = 0.003664 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2415.364603 B = 7639.616912 C = 8448.476386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.069 3.931 3 O -0.363 6.363 4 C 0.478 3.522 5 O -0.489 6.489 6 C 0.158 3.842 7 H 0.096 0.904 8 C -0.125 4.125 9 C -0.115 4.115 10 C -0.139 4.139 11 C 0.110 3.890 12 N -0.614 5.614 13 C 0.513 3.487 14 O -0.502 6.502 15 C 0.058 3.942 16 N -0.672 5.672 17 C 0.216 3.784 18 H 0.034 0.966 19 C -0.548 4.548 20 H 0.053 0.947 21 C 0.069 3.931 22 N -0.883 5.883 23 Si 0.888 3.112 24 H -0.275 1.275 25 H -0.283 1.283 26 H -0.284 1.284 27 C -0.105 4.105 28 C -0.140 4.140 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.098 0.902 42 H 0.062 0.938 43 H 0.090 0.910 44 H 0.337 0.663 45 H 0.261 0.739 46 H 0.092 0.908 47 H 0.031 0.969 48 H 0.035 0.965 49 H 0.025 0.975 50 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.330 5.363 -18.968 20.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.005 4.005 3 O -0.280 6.280 4 C 0.320 3.680 5 O -0.375 6.375 6 C 0.053 3.947 7 H 0.114 0.886 8 C -0.163 4.163 9 C -0.153 4.153 10 C -0.178 4.178 11 C -0.012 4.012 12 N -0.353 5.353 13 C 0.302 3.698 14 O -0.376 6.376 15 C -0.075 4.075 16 N -0.304 5.304 17 C 0.108 3.892 18 H 0.052 0.948 19 C -0.588 4.588 20 H 0.071 0.929 21 C -0.134 4.134 22 N -0.521 5.521 23 Si 0.716 3.284 24 H -0.199 1.199 25 H -0.209 1.209 26 H -0.210 1.210 27 C -0.143 4.143 28 C -0.197 4.197 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.116 0.884 42 H 0.080 0.920 43 H 0.108 0.892 44 H 0.155 0.845 45 H 0.071 0.929 46 H 0.110 0.890 47 H 0.049 0.951 48 H 0.055 0.945 49 H 0.044 0.956 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.912 4.088 -19.146 20.450 hybrid contribution -0.883 1.275 1.264 2.001 sum -6.795 5.363 -17.882 19.867 Atomic orbital electron populations 1.21790 0.93104 1.02693 1.03152 1.22902 0.94643 0.80330 1.02643 1.86377 1.24531 1.32390 1.84716 1.22611 0.80969 0.91600 0.72796 1.90671 1.60047 1.42438 1.44305 1.20488 0.94188 0.92636 0.87359 0.88624 1.21822 0.99422 0.99502 0.95588 1.21487 0.99141 0.96189 0.98437 1.21976 0.98384 1.03059 0.94348 1.21826 0.94275 0.85561 0.99547 1.48191 1.48722 1.20887 1.17517 1.21386 0.83613 0.81058 0.83706 1.90656 1.41256 1.29892 1.75827 1.21660 0.97765 0.96529 0.91497 1.60762 1.14649 1.37054 1.17904 1.19186 0.92711 0.92996 0.84312 0.94798 1.21907 1.04930 1.29484 1.02449 0.92851 1.24921 0.94784 0.95807 0.97841 1.69886 1.15831 1.43838 1.22553 0.86611 0.79854 0.80651 0.81298 1.19949 1.20912 1.21001 1.21475 0.97684 0.94947 1.00242 1.21723 0.99562 0.97829 1.00589 0.90456 0.91510 0.91915 0.91905 0.90703 0.90313 0.90045 0.91377 0.90983 0.90196 0.90933 0.90950 0.88384 0.92013 0.89201 0.84527 0.92875 0.89017 0.95062 0.94545 0.95603 0.92977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 10.29 37.16 0.38 -1.07 16 2 C 0.07 0.91 6.19 37.16 0.23 1.14 16 3 O -0.36 -5.50 10.22 -41.20 -0.42 -5.92 16 4 C 0.48 7.76 4.51 36.01 0.16 7.92 16 5 O -0.49 -9.59 14.33 -26.92 -0.39 -9.98 16 6 C 0.16 2.00 3.33 -68.97 -0.23 1.77 16 7 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 8 C -0.13 -1.22 5.30 -26.83 -0.14 -1.37 16 9 C -0.11 -0.84 5.88 -26.69 -0.16 -1.00 16 10 C -0.14 -1.13 6.08 -26.61 -0.16 -1.30 16 11 C 0.11 1.12 6.35 -3.71 -0.02 1.10 16 12 N -0.61 -8.50 2.98 -166.78 -0.50 -8.99 16 13 C 0.51 9.27 7.42 -10.98 -0.08 9.19 16 14 O -0.50 -10.75 11.85 -21.09 -0.25 -11.00 16 15 C 0.06 1.09 4.34 -4.97 -0.02 1.07 16 16 N -0.67 -14.97 5.35 -109.21 -0.58 -15.55 16 17 C 0.22 5.33 1.95 -68.86 -0.13 5.20 16 18 H 0.03 0.90 7.92 -51.93 -0.41 0.49 16 19 C -0.55 -14.56 8.13 -34.44 -0.28 -14.84 16 20 H 0.05 1.42 7.80 -52.48 -0.41 1.01 16 21 C 0.07 1.86 5.29 -17.82 -0.09 1.77 16 22 N -0.88 -24.51 11.29 55.43 0.63 -23.88 16 23 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 24 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 C -0.10 -2.58 5.45 -26.73 -0.15 -2.72 16 28 C -0.14 -3.04 9.86 37.16 0.37 -2.67 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.78 8.13 -51.93 -0.42 0.35 16 33 H 0.07 1.16 8.13 -51.93 -0.42 0.73 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.97 7.92 -51.93 -0.41 0.55 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.10 1.04 5.93 -51.93 -0.31 0.73 16 42 H 0.06 1.15 7.32 -51.93 -0.38 0.77 16 43 H 0.09 1.60 7.92 -51.93 -0.41 1.19 16 44 H 0.34 7.87 8.04 -39.30 -0.32 7.56 16 45 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 46 H 0.09 2.47 5.94 -51.93 -0.31 2.16 16 47 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 48 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 49 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.05 1.14 7.65 -51.93 -0.40 0.74 16 LS Contribution 394.08 15.07 5.94 5.94 Total: -1.00 -32.58 394.08 -9.75 -42.33 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -8.83 Total: 7.12 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: -0.33 Total: 4.19 kcal Atomic # 7 Polarization: -47.98 SS G_CDS: -0.45 Total: -48.43 kcal Atomic # 8 Polarization: -25.84 SS G_CDS: -1.06 Total: -26.90 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.58 -9.75 -42.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570643552.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.336 kcal (2) G-P(sol) polarization free energy of solvation -32.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds