Wall clock time and date at job start Tue Mar 31 2020 15:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45200 * 109.47421 * 2 1 4 4 C 1.34229 * 116.99791 * 179.97438 * 3 2 1 5 5 O 1.20829 * 120.00317 * 359.97438 * 4 3 2 6 6 C 1.50706 * 119.99820 * 179.97438 * 4 3 2 7 7 H 1.09000 * 109.70121 * 358.35616 * 6 4 3 8 8 C 1.52763 * 109.51083 * 238.23719 * 6 4 3 9 9 C 1.53038 * 109.37831 * 185.70903 * 8 6 4 10 10 C 1.53034 * 109.54229 * 61.24244 * 9 8 6 11 11 C 1.53196 * 109.31256 * 298.63159 * 10 9 8 12 12 N 1.46929 * 108.77490 * 54.63490 * 11 10 9 13 13 C 1.34773 * 120.63364 * 126.36788 * 12 11 10 14 14 O 1.21278 * 120.00490 * 174.32618 * 13 12 11 15 15 C 1.50705 * 119.99550 * 354.32880 * 13 12 11 16 16 N 1.46904 * 109.46664 * 179.97438 * 15 13 12 17 17 C 1.46901 * 110.99612 * 184.65468 * 16 15 13 18 18 H 1.09005 * 109.47172 * 320.97856 * 17 16 15 19 19 C 1.50699 * 109.47281 * 80.97740 * 17 16 15 20 20 H 1.08010 * 120.00002 * 0.02562 * 19 17 16 21 21 C 1.37869 * 120.00158 * 179.97438 * 19 17 16 22 22 N 1.31517 * 120.00349 * 0.02562 * 21 19 17 23 23 Si 1.86809 * 120.00152 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.46817 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46789 * 120.00296 * 23 21 19 26 26 H 1.48499 * 109.47056 * 239.99969 * 23 21 19 27 27 C 1.53002 * 109.46816 * 200.97612 * 17 16 15 28 28 C 1.53004 * 109.47109 * 65.71175 * 27 17 16 29 29 H 1.08995 * 109.47586 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47155 * 300.00744 * 1 2 3 31 31 H 1.09004 * 109.46328 * 59.99992 * 1 2 3 32 32 H 1.09003 * 109.47403 * 239.99491 * 2 1 3 33 33 H 1.09000 * 109.46790 * 120.00167 * 2 1 3 34 34 H 1.08994 * 109.55975 * 65.67003 * 8 6 4 35 35 H 1.09004 * 109.38477 * 305.63435 * 8 6 4 36 36 H 1.08999 * 109.46184 * 301.21710 * 9 8 6 37 37 H 1.09001 * 109.45436 * 181.26162 * 9 8 6 38 38 H 1.08998 * 109.49913 * 178.67763 * 10 9 8 39 39 H 1.08998 * 109.49936 * 58.58131 * 10 9 8 40 40 H 1.08997 * 109.58314 * 294.84793 * 11 10 9 41 41 H 1.08995 * 109.58793 * 174.42106 * 11 10 9 42 42 H 1.09003 * 109.46930 * 59.99825 * 15 13 12 43 43 H 1.08999 * 109.47521 * 299.99964 * 15 13 12 44 44 H 1.00893 * 111.00138 * 308.60663 * 16 15 13 45 45 H 0.96992 * 120.00627 * 179.97438 * 22 21 19 46 46 H 1.09001 * 109.46619 * 185.70361 * 27 17 16 47 47 H 1.08997 * 109.47235 * 305.70881 * 27 17 16 48 48 H 1.08996 * 109.47434 * 64.91829 * 28 27 17 49 49 H 1.08996 * 109.47168 * 184.92584 * 28 27 17 50 50 H 1.09001 * 109.46786 * 304.92329 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0808 0.5864 0.0015 6 6 3.9209 2.9373 0.0000 7 1 3.1135 3.6689 -0.0303 8 6 4.8169 3.1183 -1.2239 9 6 5.5116 4.4798 -1.1478 10 6 6.3865 4.5386 0.1063 11 6 5.5039 4.3762 1.3479 12 7 4.7230 3.1388 1.2144 13 6 4.7465 2.2039 2.1849 14 8 4.0200 1.2356 2.1118 15 6 5.6756 2.3619 3.3609 16 7 5.5120 1.2203 4.2709 17 6 6.3218 1.3940 5.4842 18 1 7.2819 1.8374 5.2198 19 6 5.5977 2.3005 6.4459 20 1 4.6322 2.7067 6.1824 21 6 6.1671 2.6106 7.6626 22 7 7.3425 2.1157 7.9838 23 14 5.2692 3.7337 8.8551 24 1 3.9747 4.1532 8.2605 25 1 5.0177 3.0070 10.1255 26 1 6.1013 4.9332 9.1273 27 6 6.5527 0.0323 6.1424 28 6 7.4105 -0.8396 5.2232 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5139 -0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 4.2123 3.0683 -2.1294 35 1 5.5671 2.3276 -1.2433 36 1 4.7607 5.2687 -1.1042 37 1 6.1340 4.6197 -2.0317 38 1 6.8992 5.4997 0.1475 39 1 7.1218 3.7347 0.0751 40 1 4.8283 5.2277 1.4298 41 1 6.1314 4.3182 2.2372 42 1 5.4383 3.2848 3.8900 43 1 6.7060 2.4004 3.0074 44 1 4.5402 1.0785 4.5020 45 1 7.7434 2.3341 8.8396 46 1 7.0657 0.1712 7.0941 47 1 5.5933 -0.4555 6.3146 48 1 8.4007 -0.3956 5.1213 49 1 7.5022 -1.8380 5.6510 50 1 6.9396 -0.9064 4.2424 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570643552.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:12 Heat of formation + Delta-G solvation = -143.155372 kcal Electronic energy + Delta-G solvation = -29760.793207 eV Core-core repulsion = 25787.160885 eV Total energy + Delta-G solvation = -3973.632322 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.25337 -40.47418 -38.69555 -37.73065 -37.40595 -34.49129 -33.96488 -33.21528 -32.78355 -32.12404 -29.17441 -27.51708 -26.28277 -25.25494 -24.43322 -23.75456 -22.18854 -21.87042 -21.51604 -19.98125 -19.03438 -18.68502 -18.09408 -17.66232 -16.98647 -16.93053 -16.75865 -16.36015 -15.82057 -15.37650 -15.31633 -15.14000 -14.89578 -14.75592 -14.50823 -14.16781 -13.99505 -13.87646 -13.72936 -13.48843 -13.43697 -13.12667 -13.08996 -12.81226 -12.75432 -12.62239 -12.53401 -12.44942 -12.15356 -12.08103 -11.77605 -11.67793 -11.56385 -11.52953 -11.47831 -11.21745 -11.09335 -10.65310 -10.46548 -9.79323 -9.11777 -8.05984 -6.29068 1.10574 1.37853 1.41595 1.50000 1.51152 1.71557 1.97885 2.40390 3.13713 3.43115 3.65204 3.73951 3.78758 3.84465 3.98613 4.01153 4.06090 4.11583 4.19519 4.34412 4.38458 4.46615 4.54643 4.58520 4.67957 4.72684 4.78496 4.80922 4.85164 4.88552 4.90632 5.01369 5.11586 5.11791 5.13121 5.20800 5.37910 5.39178 5.44439 5.46616 5.57704 5.58188 5.73163 6.02743 6.12503 6.14001 6.34655 6.68606 6.84250 6.92998 7.10736 7.42571 8.90800 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.011590 B = 0.003664 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2415.364603 B = 7639.616912 C = 8448.476386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.063 3.937 3 O -0.365 6.365 4 C 0.472 3.528 5 O -0.531 6.531 6 C 0.154 3.846 7 H 0.125 0.875 8 C -0.120 4.120 9 C -0.108 4.108 10 C -0.136 4.136 11 C 0.100 3.900 12 N -0.605 5.605 13 C 0.509 3.491 14 O -0.544 6.544 15 C 0.063 3.937 16 N -0.675 5.675 17 C 0.225 3.775 18 H 0.012 0.988 19 C -0.561 4.561 20 H 0.047 0.953 21 C 0.025 3.975 22 N -0.908 5.908 23 Si 0.951 3.049 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.276 1.276 27 C -0.102 4.102 28 C -0.127 4.127 29 H 0.098 0.902 30 H 0.060 0.940 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.043 0.957 34 H 0.100 0.900 35 H 0.054 0.946 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.107 0.893 39 H 0.054 0.946 40 H 0.100 0.900 41 H 0.089 0.911 42 H 0.065 0.935 43 H 0.097 0.903 44 H 0.329 0.671 45 H 0.263 0.737 46 H 0.069 0.931 47 H 0.022 0.978 48 H 0.037 0.963 49 H 0.045 0.955 50 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.131 7.674 -20.403 22.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.011 4.011 3 O -0.282 6.282 4 C 0.316 3.684 5 O -0.420 6.420 6 C 0.050 3.950 7 H 0.143 0.857 8 C -0.158 4.158 9 C -0.145 4.145 10 C -0.174 4.174 11 C -0.020 4.020 12 N -0.343 5.343 13 C 0.298 3.702 14 O -0.422 6.422 15 C -0.069 4.069 16 N -0.305 5.305 17 C 0.116 3.884 18 H 0.030 0.970 19 C -0.600 4.600 20 H 0.066 0.934 21 C -0.175 4.175 22 N -0.546 5.546 23 Si 0.777 3.223 24 H -0.197 1.197 25 H -0.209 1.209 26 H -0.201 1.201 27 C -0.141 4.141 28 C -0.184 4.184 29 H 0.116 0.884 30 H 0.079 0.921 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.061 0.939 34 H 0.118 0.882 35 H 0.073 0.927 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.126 0.874 39 H 0.073 0.927 40 H 0.118 0.882 41 H 0.108 0.892 42 H 0.082 0.918 43 H 0.115 0.885 44 H 0.146 0.854 45 H 0.073 0.927 46 H 0.087 0.913 47 H 0.041 0.959 48 H 0.056 0.944 49 H 0.064 0.936 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.708 6.453 -20.619 22.623 hybrid contribution -0.634 0.551 1.659 1.860 sum -7.342 7.005 -18.960 21.505 Atomic orbital electron populations 1.21790 0.89986 1.04287 1.03673 1.23081 0.97070 0.79573 1.01388 1.86389 1.24249 1.33302 1.84300 1.23424 0.80940 0.92707 0.71328 1.90640 1.60936 1.44184 1.46208 1.20886 0.95304 0.91010 0.87753 0.85734 1.21859 0.98667 1.00365 0.94903 1.21510 0.99544 0.94896 0.98587 1.21979 0.97856 1.03850 0.93678 1.22181 0.94816 0.84498 1.00523 1.48213 1.48435 1.20871 1.16784 1.21168 0.83214 0.81449 0.84355 1.90646 1.42844 1.31751 1.76917 1.21625 0.98618 0.95241 0.91448 1.60662 1.13669 1.39005 1.17185 1.18963 0.91825 0.92594 0.84981 0.96957 1.22104 1.04804 1.29951 1.03176 0.93440 1.25618 0.95473 0.97103 0.99320 1.69996 1.16927 1.44699 1.23020 0.85620 0.78761 0.78950 0.78933 1.19724 1.20882 1.20148 1.21372 0.97411 0.95509 0.99823 1.21572 0.98827 0.98324 0.99697 0.88358 0.92068 0.90178 0.91334 0.93867 0.88151 0.92733 0.89089 0.89089 0.87432 0.92742 0.88198 0.89238 0.91772 0.88499 0.85431 0.92721 0.91304 0.95936 0.94417 0.93586 0.93396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 10.29 71.98 0.74 -1.82 16 2 C 0.06 1.70 6.19 71.98 0.45 2.15 16 3 O -0.37 -11.11 10.22 -49.54 -0.51 -11.62 16 4 C 0.47 15.46 4.51 71.24 0.32 15.78 16 5 O -0.53 -21.71 14.33 29.77 0.43 -21.28 16 6 C 0.15 3.68 3.33 44.09 0.15 3.83 16 7 H 0.13 2.28 8.14 -2.39 -0.02 2.26 16 8 C -0.12 -2.09 5.30 30.53 0.16 -1.93 16 9 C -0.11 -1.17 5.88 30.62 0.18 -0.99 16 10 C -0.14 -1.82 6.08 30.67 0.19 -1.63 16 11 C 0.10 1.82 6.35 86.36 0.55 2.37 16 12 N -0.61 -16.24 2.98 -799.95 -2.38 -18.62 16 13 C 0.51 18.76 7.42 87.66 0.65 19.41 16 14 O -0.54 -24.20 11.85 22.45 0.27 -23.94 16 15 C 0.06 2.42 4.34 85.56 0.37 2.79 16 16 N -0.67 -31.06 5.35 -499.43 -2.67 -33.73 16 17 C 0.22 11.42 1.95 44.17 0.09 11.51 16 18 H 0.01 0.68 7.92 -2.38 -0.02 0.66 16 19 C -0.56 -30.27 8.13 25.60 0.21 -30.06 16 20 H 0.05 2.56 7.80 -2.91 -0.02 2.54 16 21 C 0.03 1.37 5.29 84.65 0.45 1.82 16 22 N -0.91 -50.92 11.29 21.44 0.24 -50.68 16 23 Si 0.95 42.65 29.54 68.60 2.03 44.68 16 24 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 25 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 26 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 27 C -0.10 -5.16 5.45 30.60 0.17 -4.99 16 28 C -0.13 -5.55 9.86 71.98 0.71 -4.84 16 29 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.07 1.74 8.13 -2.39 -0.02 1.72 16 33 H 0.04 1.43 8.13 -2.39 -0.02 1.41 16 34 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.05 1.27 7.92 -2.39 -0.02 1.25 16 36 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.09 1.79 5.93 -2.39 -0.01 1.77 16 42 H 0.06 2.43 7.32 -2.39 -0.02 2.41 16 43 H 0.10 3.53 7.92 -2.39 -0.02 3.51 16 44 H 0.33 16.00 8.04 -89.70 -0.72 15.28 16 45 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 46 H 0.07 3.80 5.94 -2.39 -0.01 3.78 16 47 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 48 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 49 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 50 H 0.05 2.12 7.65 -2.39 -0.02 2.10 16 Total: -1.00 -73.36 394.08 2.97 -70.39 By element: Atomic # 1 Polarization: 31.21 SS G_CDS: 0.19 Total: 31.40 kcal Atomic # 6 Polarization: 8.02 SS G_CDS: 5.37 Total: 13.39 kcal Atomic # 7 Polarization: -98.22 SS G_CDS: -4.81 Total: -103.03 kcal Atomic # 8 Polarization: -57.02 SS G_CDS: 0.19 Total: -56.84 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -73.36 2.97 -70.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570643552.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.761 kcal (2) G-P(sol) polarization free energy of solvation -73.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds