Wall clock time and date at job start Tue Mar 31 2020 15:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45204 * 109.47008 * 2 1 4 4 C 1.34229 * 116.99641 * 180.02562 * 3 2 1 5 5 O 1.20824 * 120.00240 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.00097 * 180.02562 * 4 3 2 7 7 H 1.09002 * 109.58232 * 359.03786 * 6 4 3 8 8 C 1.53196 * 109.70413 * 238.68831 * 6 4 3 9 9 C 1.53037 * 109.31334 * 185.50368 * 8 6 4 10 10 C 1.53045 * 109.53578 * 61.36471 * 9 8 6 11 11 C 1.53193 * 109.31361 * 298.63416 * 10 9 8 12 12 N 1.46921 * 109.59060 * 119.32214 * 6 4 3 13 13 C 1.34779 * 120.62858 * 353.56855 * 12 6 4 14 14 O 1.21280 * 120.00072 * 354.25188 * 13 12 6 15 15 C 1.50701 * 119.99923 * 174.25665 * 13 12 6 16 16 N 1.46895 * 109.47075 * 179.97438 * 15 13 12 17 17 C 1.46902 * 110.99903 * 185.33488 * 16 15 13 18 18 H 1.09003 * 109.47150 * 33.32178 * 17 16 15 19 19 C 1.50701 * 109.47377 * 273.31561 * 17 16 15 20 20 H 1.08001 * 119.99839 * 0.02562 * 19 17 16 21 21 C 1.37872 * 120.00043 * 180.02562 * 19 17 16 22 22 N 1.31517 * 120.00366 * 359.97438 * 21 19 17 23 23 Si 1.86800 * 120.00012 * 180.02562 * 21 19 17 24 24 H 1.48491 * 109.47573 * 89.99711 * 23 21 19 25 25 H 1.48502 * 109.46885 * 209.99722 * 23 21 19 26 26 H 1.48506 * 109.46992 * 329.99394 * 23 21 19 27 27 C 1.53005 * 109.47060 * 153.31779 * 17 16 15 28 28 C 1.53004 * 109.46715 * 295.25162 * 27 17 16 29 29 H 1.08998 * 109.47263 * 59.99003 * 1 2 3 30 30 H 1.09000 * 109.46977 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46516 * 299.99608 * 1 2 3 32 32 H 1.09001 * 109.46663 * 240.00912 * 2 1 3 33 33 H 1.08993 * 109.47472 * 120.00590 * 2 1 3 34 34 H 1.09001 * 109.49648 * 65.55345 * 8 6 4 35 35 H 1.09002 * 109.49525 * 305.45780 * 8 6 4 36 36 H 1.09000 * 109.45990 * 301.34797 * 9 8 6 37 37 H 1.08999 * 109.46389 * 181.38254 * 9 8 6 38 38 H 1.08995 * 109.49597 * 58.58844 * 10 9 8 39 39 H 1.09006 * 109.49415 * 178.65555 * 10 9 8 40 40 H 1.08994 * 109.58763 * 174.42853 * 11 10 9 41 41 H 1.09007 * 109.58390 * 294.84745 * 11 10 9 42 42 H 1.08994 * 109.47096 * 299.99774 * 15 13 12 43 43 H 1.09008 * 109.47142 * 59.99494 * 15 13 12 44 44 H 1.00902 * 110.99659 * 61.38563 * 16 15 13 45 45 H 0.96997 * 120.00268 * 180.02562 * 22 21 19 46 46 H 1.08999 * 109.47100 * 55.24976 * 27 17 16 47 47 H 1.08994 * 109.47359 * 175.25442 * 27 17 16 48 48 H 1.09005 * 109.46766 * 185.07775 * 28 27 17 49 49 H 1.08994 * 109.46960 * 305.07326 * 28 27 17 50 50 H 1.08997 * 109.47569 * 65.07966 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0015 6 6 3.9208 2.9374 0.0000 7 1 3.1117 3.6675 -0.0164 8 6 4.8103 3.1289 -1.2325 9 6 5.4984 4.4935 -1.1530 10 6 6.3832 4.5487 0.0945 11 6 5.5116 4.3733 1.3420 12 7 4.7361 3.1327 1.2066 13 6 4.7725 2.1915 2.1705 14 8 4.0499 1.2202 2.0973 15 6 5.7109 2.3460 3.3395 16 7 5.5606 1.1977 4.2432 17 6 6.3676 1.3746 5.4579 18 1 6.4066 2.4326 5.7173 19 6 7.7645 0.8658 5.2116 20 1 8.0268 0.4527 4.2488 21 6 8.7077 0.9276 6.2154 22 7 8.3885 1.4311 7.3876 23 14 10.4395 0.2975 5.9098 24 1 11.2835 1.4024 5.3886 25 1 11.0146 -0.2064 7.1828 26 1 10.3970 -0.8045 4.9153 27 6 5.7348 0.5904 6.6093 28 6 4.3634 1.1842 6.9376 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3632 0.5138 0.8901 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5139 0.8898 34 1 4.1986 3.0818 -2.1335 35 1 5.5644 2.3423 -1.2627 36 1 4.7437 5.2780 -1.0979 37 1 6.1129 4.6427 -2.0409 38 1 7.1224 3.7489 0.0518 39 1 6.8914 5.5120 0.1377 40 1 6.1465 4.3127 2.2258 41 1 4.8321 5.2206 1.4351 42 1 6.7379 2.3918 2.9773 43 1 5.4739 3.2643 3.8768 44 1 5.7965 0.3357 3.7748 45 1 9.0521 1.4750 8.0937 46 1 5.6183 -0.4533 6.3172 47 1 6.3773 0.6524 7.4875 48 1 3.9519 0.6847 7.8148 49 1 4.4684 2.2496 7.1421 50 1 3.6931 1.0411 6.0902 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570643554.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:23 Heat of formation + Delta-G solvation = -122.734158 kcal Electronic energy + Delta-G solvation = -29754.385913 eV Core-core repulsion = 25781.639121 eV Total energy + Delta-G solvation = -3972.746792 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.03820 -39.20790 -37.47469 -36.26027 -35.81708 -33.07217 -32.51216 -32.03728 -31.32284 -30.92403 -27.51440 -26.15540 -24.72857 -24.35740 -22.92744 -22.46715 -21.05036 -20.90118 -19.56523 -18.81723 -17.75237 -16.94072 -16.67174 -16.45746 -15.76799 -15.65837 -15.28003 -14.78027 -14.54882 -14.22503 -14.06781 -13.85898 -13.56251 -13.41441 -13.32808 -13.02340 -12.86813 -12.62783 -12.50993 -12.01926 -11.89883 -11.80222 -11.62657 -11.48241 -11.36034 -11.20593 -11.14916 -11.08995 -10.89457 -10.87393 -10.66634 -10.34138 -10.17067 -10.02424 -9.70931 -9.54761 -9.22418 -9.03960 -8.67009 -8.39596 -7.27173 -6.01667 -4.15137 2.28069 2.74137 2.96450 3.17506 3.25381 3.33309 3.37475 4.37906 4.42349 4.54959 4.60645 4.76774 4.86878 4.94441 4.96069 5.00974 5.06682 5.22407 5.24540 5.32973 5.36132 5.47009 5.52980 5.55982 5.66434 5.69116 5.78203 5.81399 5.82509 5.88824 5.92038 6.09018 6.12105 6.38201 6.43785 6.55083 6.72165 6.75217 7.09685 7.22131 7.33734 7.45044 7.58968 7.76686 8.06672 8.08220 8.11275 8.28749 8.45540 8.64086 8.97515 9.52854 10.98176 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.011957 B = 0.003737 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2341.174057 B = 7490.472836 C = 8771.396001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.069 3.931 3 O -0.362 6.362 4 C 0.479 3.521 5 O -0.490 6.490 6 C 0.158 3.842 7 H 0.096 0.904 8 C -0.124 4.124 9 C -0.115 4.115 10 C -0.140 4.140 11 C 0.111 3.889 12 N -0.615 5.615 13 C 0.512 3.488 14 O -0.499 6.499 15 C 0.059 3.941 16 N -0.672 5.672 17 C 0.217 3.783 18 H 0.032 0.968 19 C -0.548 4.548 20 H 0.054 0.946 21 C 0.069 3.931 22 N -0.884 5.884 23 Si 0.889 3.111 24 H -0.281 1.281 25 H -0.285 1.285 26 H -0.275 1.275 27 C -0.105 4.105 28 C -0.136 4.136 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.097 0.903 41 H 0.072 0.928 42 H 0.059 0.941 43 H 0.091 0.909 44 H 0.338 0.662 45 H 0.262 0.738 46 H 0.032 0.968 47 H 0.091 0.909 48 H 0.025 0.975 49 H 0.035 0.965 50 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.206 7.973 -16.760 21.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.005 4.005 3 O -0.280 6.280 4 C 0.321 3.679 5 O -0.376 6.376 6 C 0.053 3.947 7 H 0.114 0.886 8 C -0.163 4.163 9 C -0.152 4.152 10 C -0.178 4.178 11 C -0.011 4.011 12 N -0.355 5.355 13 C 0.301 3.699 14 O -0.372 6.372 15 C -0.074 4.074 16 N -0.303 5.303 17 C 0.109 3.891 18 H 0.050 0.950 19 C -0.587 4.587 20 H 0.072 0.928 21 C -0.134 4.134 22 N -0.522 5.522 23 Si 0.717 3.283 24 H -0.207 1.207 25 H -0.211 1.211 26 H -0.200 1.200 27 C -0.143 4.143 28 C -0.194 4.194 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.098 0.902 40 H 0.115 0.885 41 H 0.090 0.910 42 H 0.076 0.924 43 H 0.109 0.891 44 H 0.156 0.844 45 H 0.072 0.928 46 H 0.050 0.950 47 H 0.109 0.891 48 H 0.044 0.956 49 H 0.055 0.945 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -10.910 7.364 -16.278 20.934 hybrid contribution 2.029 -0.553 -0.432 2.147 sum -8.880 6.811 -16.709 20.111 Atomic orbital electron populations 1.21791 0.93092 1.02692 1.03145 1.22904 0.94653 0.80323 1.02644 1.86376 1.24514 1.32396 1.84700 1.22607 0.80957 0.91596 0.72729 1.90665 1.60069 1.42514 1.44363 1.20568 0.94012 0.92601 0.87497 0.88601 1.21893 0.99445 0.99440 0.95492 1.21487 0.99108 0.96149 0.98489 1.21978 0.98413 1.03065 0.94366 1.21807 0.94349 0.85484 0.99482 1.48205 1.48435 1.20595 1.18218 1.21412 0.83847 0.81317 0.83292 1.90665 1.41291 1.30051 1.75224 1.21628 0.95830 0.98239 0.91713 1.60641 1.60040 1.02528 1.07126 1.19196 0.88556 0.96140 0.85168 0.94980 1.21876 0.96373 1.41900 0.98565 0.92821 1.24916 0.98573 0.94830 0.95046 1.69878 1.34170 1.44973 1.03179 0.86651 0.84786 0.79189 0.77720 1.20747 1.21113 1.19963 1.21479 0.94186 0.97471 1.01194 1.21691 0.99352 0.99407 0.98925 0.91918 0.90462 0.91498 0.91920 0.90690 0.90345 0.90091 0.91370 0.91001 0.90942 0.90208 0.88470 0.90991 0.92368 0.89137 0.84418 0.92837 0.94956 0.89074 0.95635 0.94539 0.93362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 10.29 37.16 0.38 -1.05 16 2 C 0.07 0.91 6.19 37.16 0.23 1.14 16 3 O -0.36 -5.46 10.22 -40.88 -0.42 -5.88 16 4 C 0.48 7.76 4.56 36.01 0.16 7.92 16 5 O -0.49 -9.63 14.29 -26.95 -0.39 -10.02 16 6 C 0.16 1.99 3.34 -68.75 -0.23 1.76 16 7 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 8 C -0.12 -1.23 5.32 -26.61 -0.14 -1.37 16 9 C -0.11 -0.85 5.88 -26.69 -0.16 -1.01 16 10 C -0.14 -1.17 6.08 -26.61 -0.16 -1.33 16 11 C 0.11 1.11 6.35 -3.71 -0.02 1.09 16 12 N -0.61 -8.46 2.97 -166.53 -0.49 -8.95 16 13 C 0.51 9.23 7.44 -10.98 -0.08 9.14 16 14 O -0.50 -10.69 12.02 -20.85 -0.25 -10.94 16 15 C 0.06 1.10 4.35 -4.98 -0.02 1.08 16 16 N -0.67 -14.95 5.32 -109.22 -0.58 -15.53 16 17 C 0.22 5.36 1.98 -68.86 -0.14 5.23 16 18 H 0.03 0.85 7.69 -51.93 -0.40 0.45 16 19 C -0.55 -14.70 8.50 -34.44 -0.29 -15.00 16 20 H 0.05 1.45 7.72 -52.49 -0.40 1.05 16 21 C 0.07 1.87 5.29 -17.82 -0.09 1.78 16 22 N -0.88 -24.61 11.29 55.43 0.63 -23.99 16 23 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 27 C -0.10 -2.57 5.45 -26.73 -0.15 -2.71 16 28 C -0.14 -2.92 9.74 37.16 0.36 -2.56 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.78 8.13 -51.93 -0.42 0.35 16 33 H 0.07 1.16 8.13 -51.93 -0.42 0.74 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.98 7.95 -51.93 -0.41 0.56 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.10 1.01 5.93 -51.93 -0.31 0.70 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.06 1.09 7.92 -51.93 -0.41 0.68 16 43 H 0.09 1.56 7.49 -51.92 -0.39 1.18 16 44 H 0.34 8.01 8.27 -39.29 -0.33 7.68 16 45 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 46 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 47 H 0.09 2.45 5.96 -51.93 -0.31 2.14 16 48 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 50 H 0.05 1.03 7.89 -51.93 -0.41 0.62 16 LS Contribution 394.97 15.07 5.95 5.95 Total: -1.00 -32.66 394.97 -9.76 -42.43 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -8.84 Total: 6.82 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: -0.35 Total: 4.11 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: -0.45 Total: -48.47 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: -1.05 Total: -26.84 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.66 -9.76 -42.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570643554.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.306 kcal (2) G-P(sol) polarization free energy of solvation -32.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds