Wall clock time and date at job start Tue Mar 31 2020 15:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45204 * 109.47008 * 2 1 4 4 C 1.34229 * 116.99641 * 180.02562 * 3 2 1 5 5 O 1.20824 * 120.00240 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.00097 * 180.02562 * 4 3 2 7 7 H 1.09002 * 109.58232 * 359.03786 * 6 4 3 8 8 C 1.53196 * 109.70413 * 238.68831 * 6 4 3 9 9 C 1.53037 * 109.31334 * 185.50368 * 8 6 4 10 10 C 1.53045 * 109.53578 * 61.36471 * 9 8 6 11 11 C 1.53193 * 109.31361 * 298.63416 * 10 9 8 12 12 N 1.46921 * 109.59060 * 119.32214 * 6 4 3 13 13 C 1.34779 * 120.62858 * 353.56855 * 12 6 4 14 14 O 1.21280 * 120.00072 * 354.25188 * 13 12 6 15 15 C 1.50701 * 119.99923 * 174.25665 * 13 12 6 16 16 N 1.46895 * 109.47075 * 179.97438 * 15 13 12 17 17 C 1.46902 * 110.99903 * 185.33488 * 16 15 13 18 18 H 1.09003 * 109.47150 * 33.32178 * 17 16 15 19 19 C 1.50701 * 109.47377 * 273.31561 * 17 16 15 20 20 H 1.08001 * 119.99839 * 0.02562 * 19 17 16 21 21 C 1.37872 * 120.00043 * 180.02562 * 19 17 16 22 22 N 1.31517 * 120.00366 * 359.97438 * 21 19 17 23 23 Si 1.86800 * 120.00012 * 180.02562 * 21 19 17 24 24 H 1.48491 * 109.47573 * 89.99711 * 23 21 19 25 25 H 1.48502 * 109.46885 * 209.99722 * 23 21 19 26 26 H 1.48506 * 109.46992 * 329.99394 * 23 21 19 27 27 C 1.53005 * 109.47060 * 153.31779 * 17 16 15 28 28 C 1.53004 * 109.46715 * 295.25162 * 27 17 16 29 29 H 1.08998 * 109.47263 * 59.99003 * 1 2 3 30 30 H 1.09000 * 109.46977 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46516 * 299.99608 * 1 2 3 32 32 H 1.09001 * 109.46663 * 240.00912 * 2 1 3 33 33 H 1.08993 * 109.47472 * 120.00590 * 2 1 3 34 34 H 1.09001 * 109.49648 * 65.55345 * 8 6 4 35 35 H 1.09002 * 109.49525 * 305.45780 * 8 6 4 36 36 H 1.09000 * 109.45990 * 301.34797 * 9 8 6 37 37 H 1.08999 * 109.46389 * 181.38254 * 9 8 6 38 38 H 1.08995 * 109.49597 * 58.58844 * 10 9 8 39 39 H 1.09006 * 109.49415 * 178.65555 * 10 9 8 40 40 H 1.08994 * 109.58763 * 174.42853 * 11 10 9 41 41 H 1.09007 * 109.58390 * 294.84745 * 11 10 9 42 42 H 1.08994 * 109.47096 * 299.99774 * 15 13 12 43 43 H 1.09008 * 109.47142 * 59.99494 * 15 13 12 44 44 H 1.00902 * 110.99659 * 61.38563 * 16 15 13 45 45 H 0.96997 * 120.00268 * 180.02562 * 22 21 19 46 46 H 1.08999 * 109.47100 * 55.24976 * 27 17 16 47 47 H 1.08994 * 109.47359 * 175.25442 * 27 17 16 48 48 H 1.09005 * 109.46766 * 185.07775 * 28 27 17 49 49 H 1.08994 * 109.46960 * 305.07326 * 28 27 17 50 50 H 1.08997 * 109.47569 * 65.07966 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0015 6 6 3.9208 2.9374 0.0000 7 1 3.1117 3.6675 -0.0164 8 6 4.8103 3.1289 -1.2325 9 6 5.4984 4.4935 -1.1530 10 6 6.3832 4.5487 0.0945 11 6 5.5116 4.3733 1.3420 12 7 4.7361 3.1327 1.2066 13 6 4.7725 2.1915 2.1705 14 8 4.0499 1.2202 2.0973 15 6 5.7109 2.3460 3.3395 16 7 5.5606 1.1977 4.2432 17 6 6.3676 1.3746 5.4579 18 1 6.4066 2.4326 5.7173 19 6 7.7645 0.8658 5.2116 20 1 8.0268 0.4527 4.2488 21 6 8.7077 0.9276 6.2154 22 7 8.3885 1.4311 7.3876 23 14 10.4395 0.2975 5.9098 24 1 11.2835 1.4024 5.3886 25 1 11.0146 -0.2064 7.1828 26 1 10.3970 -0.8045 4.9153 27 6 5.7348 0.5904 6.6093 28 6 4.3634 1.1842 6.9376 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3632 0.5138 0.8901 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5139 0.8898 34 1 4.1986 3.0818 -2.1335 35 1 5.5644 2.3423 -1.2627 36 1 4.7437 5.2780 -1.0979 37 1 6.1129 4.6427 -2.0409 38 1 7.1224 3.7489 0.0518 39 1 6.8914 5.5120 0.1377 40 1 6.1465 4.3127 2.2258 41 1 4.8321 5.2206 1.4351 42 1 6.7379 2.3918 2.9773 43 1 5.4739 3.2643 3.8768 44 1 5.7965 0.3357 3.7748 45 1 9.0521 1.4750 8.0937 46 1 5.6183 -0.4533 6.3172 47 1 6.3773 0.6524 7.4875 48 1 3.9519 0.6847 7.8148 49 1 4.4684 2.2496 7.1421 50 1 3.6931 1.0411 6.0902 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570643554.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:22 Heat of formation + Delta-G solvation = -142.367356 kcal Electronic energy + Delta-G solvation = -29755.237272 eV Core-core repulsion = 25781.639121 eV Total energy + Delta-G solvation = -3973.598151 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.23430 -40.45364 -38.65567 -37.73004 -37.40541 -34.50483 -33.95051 -33.20278 -32.77123 -32.11013 -29.20610 -27.50724 -26.25947 -25.24718 -24.44747 -23.75145 -22.18518 -21.88204 -21.48181 -19.94639 -19.01222 -18.77362 -18.07401 -17.63886 -17.04620 -16.86099 -16.67505 -16.51608 -15.66697 -15.50825 -15.25173 -15.02951 -14.88310 -14.77498 -14.46761 -14.36457 -13.95029 -13.87096 -13.73074 -13.54192 -13.38653 -13.10861 -13.05820 -12.85030 -12.70223 -12.62545 -12.52829 -12.44992 -12.16124 -12.10100 -11.78152 -11.68232 -11.57362 -11.51489 -11.46740 -11.22006 -11.10457 -10.63106 -10.46888 -9.76328 -9.12261 -8.07983 -6.29976 1.11235 1.36604 1.39803 1.48736 1.52432 1.72009 1.98749 2.39195 3.12035 3.42976 3.65047 3.73676 3.80644 3.85571 3.98914 4.01786 4.05846 4.12063 4.19317 4.34475 4.35239 4.44499 4.55027 4.60103 4.67272 4.73070 4.77840 4.81530 4.85099 4.89689 4.91451 5.00643 5.11147 5.12327 5.13098 5.20451 5.38789 5.39963 5.43971 5.47506 5.58131 5.58806 5.72133 6.02708 6.12034 6.15170 6.34932 6.66637 6.84699 6.91961 7.14226 7.41233 8.89002 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.011957 B = 0.003737 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2341.174057 B = 7490.472836 C = 8771.396001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.062 3.938 3 O -0.364 6.364 4 C 0.472 3.528 5 O -0.534 6.534 6 C 0.155 3.845 7 H 0.128 0.872 8 C -0.119 4.119 9 C -0.108 4.108 10 C -0.137 4.137 11 C 0.102 3.898 12 N -0.607 5.607 13 C 0.508 3.492 14 O -0.541 6.541 15 C 0.063 3.937 16 N -0.673 5.673 17 C 0.226 3.774 18 H 0.015 0.985 19 C -0.564 4.564 20 H 0.044 0.956 21 C 0.027 3.973 22 N -0.906 5.906 23 Si 0.949 3.051 24 H -0.272 1.272 25 H -0.281 1.281 26 H -0.278 1.278 27 C -0.102 4.102 28 C -0.123 4.123 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.042 0.958 34 H 0.100 0.900 35 H 0.051 0.949 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.049 0.951 39 H 0.107 0.893 40 H 0.089 0.911 41 H 0.105 0.895 42 H 0.055 0.945 43 H 0.105 0.895 44 H 0.327 0.673 45 H 0.264 0.736 46 H 0.020 0.980 47 H 0.068 0.932 48 H 0.044 0.956 49 H 0.038 0.962 50 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.698 10.189 -18.310 23.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.011 4.011 3 O -0.281 6.281 4 C 0.317 3.683 5 O -0.423 6.423 6 C 0.051 3.949 7 H 0.145 0.855 8 C -0.158 4.158 9 C -0.145 4.145 10 C -0.175 4.175 11 C -0.019 4.019 12 N -0.344 5.344 13 C 0.298 3.702 14 O -0.419 6.419 15 C -0.070 4.070 16 N -0.302 5.302 17 C 0.118 3.882 18 H 0.033 0.967 19 C -0.603 4.603 20 H 0.062 0.938 21 C -0.174 4.174 22 N -0.544 5.544 23 Si 0.775 3.225 24 H -0.197 1.197 25 H -0.206 1.206 26 H -0.204 1.204 27 C -0.141 4.141 28 C -0.180 4.180 29 H 0.098 0.902 30 H 0.116 0.884 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.061 0.939 34 H 0.119 0.881 35 H 0.070 0.930 36 H 0.112 0.888 37 H 0.107 0.893 38 H 0.067 0.933 39 H 0.126 0.874 40 H 0.107 0.893 41 H 0.123 0.877 42 H 0.073 0.927 43 H 0.123 0.877 44 H 0.143 0.857 45 H 0.073 0.927 46 H 0.039 0.961 47 H 0.086 0.914 48 H 0.063 0.937 49 H 0.057 0.943 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -11.407 9.647 -17.857 23.282 hybrid contribution 2.159 -1.229 0.011 2.484 sum -9.248 8.417 -17.846 21.791 Atomic orbital electron populations 1.21790 0.89882 1.04280 1.03738 1.23082 0.97143 0.79584 1.01316 1.86388 1.24173 1.33261 1.84269 1.23440 0.80947 0.92718 0.71240 1.90635 1.60997 1.44312 1.46307 1.20967 0.95115 0.90992 0.87848 0.85451 1.21929 0.98683 1.00241 0.94918 1.21510 0.99529 0.94914 0.98530 1.21986 0.97910 1.03670 0.93970 1.22170 0.94937 0.84525 1.00264 1.48220 1.48161 1.20626 1.17441 1.21189 0.83432 0.81691 0.83935 1.90656 1.42955 1.31881 1.76369 1.21622 0.96124 0.97302 0.91921 1.60564 1.59246 1.03201 1.07186 1.18985 0.88190 0.94737 0.86320 0.96707 1.22091 0.97743 1.42188 0.98299 0.93820 1.25582 1.01980 0.94977 0.94833 1.69979 1.35249 1.45478 1.03699 0.85707 0.80664 0.78642 0.77499 1.19722 1.20636 1.20351 1.21372 0.95557 0.97005 1.00158 1.21533 0.97343 0.99476 0.99669 0.90163 0.88411 0.91930 0.91470 0.93895 0.88144 0.93036 0.88799 0.89279 0.93254 0.87431 0.89297 0.87743 0.92669 0.87692 0.85711 0.92657 0.96149 0.91393 0.93676 0.94263 0.93466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 10.29 71.98 0.74 -1.77 16 2 C 0.06 1.69 6.19 71.98 0.45 2.14 16 3 O -0.36 -10.98 10.22 -49.85 -0.51 -11.49 16 4 C 0.47 15.47 4.56 71.24 0.32 15.80 16 5 O -0.53 -21.97 14.29 29.81 0.43 -21.55 16 6 C 0.15 3.66 3.34 44.23 0.15 3.81 16 7 H 0.13 2.25 8.14 -2.39 -0.02 2.23 16 8 C -0.12 -2.12 5.32 30.67 0.16 -1.96 16 9 C -0.11 -1.19 5.88 30.62 0.18 -1.01 16 10 C -0.14 -1.92 6.08 30.67 0.19 -1.73 16 11 C 0.10 1.80 6.35 86.36 0.55 2.35 16 12 N -0.61 -16.11 2.97 -799.18 -2.38 -18.49 16 13 C 0.51 18.66 7.44 87.66 0.65 19.32 16 14 O -0.54 -24.12 12.02 22.22 0.27 -23.86 16 15 C 0.06 2.40 4.35 85.56 0.37 2.77 16 16 N -0.67 -30.92 5.32 -499.45 -2.66 -33.58 16 17 C 0.23 11.47 1.98 44.17 0.09 11.56 16 18 H 0.02 0.81 7.69 -2.39 -0.02 0.79 16 19 C -0.56 -30.99 8.50 25.60 0.22 -30.77 16 20 H 0.04 2.43 7.72 -2.91 -0.02 2.41 16 21 C 0.03 1.48 5.29 84.65 0.45 1.93 16 22 N -0.91 -50.92 11.29 21.45 0.24 -50.68 16 23 Si 0.95 43.43 29.54 68.60 2.03 45.46 16 24 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 25 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 26 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 27 C -0.10 -5.12 5.45 30.60 0.17 -4.96 16 28 C -0.12 -5.24 9.74 71.98 0.70 -4.54 16 29 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.07 1.71 8.13 -2.39 -0.02 1.70 16 33 H 0.04 1.42 8.13 -2.39 -0.02 1.40 16 34 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.05 1.23 7.95 -2.39 -0.02 1.21 16 36 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.11 0.96 8.14 -2.38 -0.02 0.94 16 40 H 0.09 1.74 5.93 -2.39 -0.01 1.72 16 41 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 42 H 0.06 2.14 7.92 -2.39 -0.02 2.12 16 43 H 0.11 3.63 7.49 -2.38 -0.02 3.62 16 44 H 0.33 16.25 8.27 -89.69 -0.74 15.51 16 45 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 46 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.07 3.73 5.96 -2.39 -0.01 3.72 16 48 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 49 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 50 H 0.05 2.01 7.89 -2.39 -0.02 1.99 16 Total: -1.00 -74.01 394.97 2.98 -71.03 By element: Atomic # 1 Polarization: 30.04 SS G_CDS: 0.17 Total: 30.22 kcal Atomic # 6 Polarization: 7.55 SS G_CDS: 5.38 Total: 12.93 kcal Atomic # 7 Polarization: -97.96 SS G_CDS: -4.79 Total: -102.75 kcal Atomic # 8 Polarization: -57.08 SS G_CDS: 0.18 Total: -56.89 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -74.01 2.98 -71.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570643554.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.333 kcal (2) G-P(sol) polarization free energy of solvation -74.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds