Wall clock time and date at job start Tue Mar 31 2020 15:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47028 * 2 1 4 4 H 1.08996 * 109.46857 * 305.93367 * 3 2 1 5 5 N 1.46495 * 109.46957 * 65.93292 * 3 2 1 6 6 C 1.34777 * 120.00192 * 274.99692 * 5 3 2 7 7 O 1.21276 * 120.00068 * 0.02562 * 6 5 3 8 8 C 1.50695 * 119.99888 * 180.02562 * 6 5 3 9 9 C 1.53001 * 109.47160 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.47319 * 179.97438 * 9 8 6 11 11 C 1.53001 * 109.47319 * 180.02562 * 10 9 8 12 12 C 1.50699 * 109.47488 * 180.02562 * 11 10 9 13 13 H 1.08008 * 119.99678 * 0.02562 * 12 11 10 14 14 C 1.37872 * 120.00235 * 179.97438 * 12 11 10 15 15 N 1.31517 * 120.00157 * 179.97438 * 14 12 11 16 16 Si 1.86805 * 119.99954 * 0.02562 * 14 12 11 17 17 H 1.48496 * 109.47367 * 89.99720 * 16 14 12 18 18 H 1.48500 * 109.46974 * 209.99569 * 16 14 12 19 19 H 1.48499 * 109.46823 * 329.99444 * 16 14 12 20 20 C 1.50697 * 109.46704 * 185.93322 * 3 2 1 21 21 O 1.21280 * 120.00023 * 263.11340 * 20 3 2 22 22 N 1.34785 * 119.99794 * 83.12057 * 20 3 2 23 23 C 1.47143 * 120.98013 * 4.73907 * 22 20 3 24 24 C 1.53721 * 108.15979 * 129.43693 * 23 22 20 25 25 O 1.42962 * 109.14870 * 52.53286 * 24 23 22 26 26 C 1.42960 * 114.16557 * 297.29219 * 25 24 23 27 27 C 1.47151 * 120.97772 * 185.02243 * 22 20 3 28 28 H 1.09000 * 109.47440 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47241 * 300.00229 * 1 2 3 30 30 H 1.09001 * 109.47380 * 59.99918 * 1 2 3 31 31 H 1.08998 * 109.46902 * 119.99495 * 2 1 3 32 32 H 1.08998 * 109.47241 * 239.99771 * 2 1 3 33 33 H 0.97006 * 119.99758 * 94.99943 * 5 3 2 34 34 H 1.09002 * 109.47566 * 299.99874 * 8 6 5 35 35 H 1.08995 * 109.47537 * 59.99867 * 8 6 5 36 36 H 1.08993 * 109.47311 * 300.00335 * 9 8 6 37 37 H 1.09011 * 109.46924 * 59.99973 * 9 8 6 38 38 H 1.09002 * 109.47697 * 300.00692 * 10 9 8 39 39 H 1.09005 * 109.47050 * 60.00656 * 10 9 8 40 40 H 1.09002 * 109.47301 * 300.00935 * 11 10 9 41 41 H 1.08997 * 109.46798 * 60.00531 * 11 10 9 42 42 H 0.96999 * 119.99764 * 180.02562 * 15 14 12 43 43 H 1.09005 * 109.68372 * 249.20782 * 23 22 20 44 44 H 1.08997 * 109.68773 * 9.76437 * 23 22 20 45 45 H 1.08999 * 109.65382 * 292.56615 * 24 23 22 46 46 H 1.09003 * 109.48166 * 172.39793 * 24 23 22 47 47 H 1.09001 * 109.51172 * 302.65538 * 26 25 24 48 48 H 1.08999 * 109.54865 * 182.53457 * 26 25 24 49 49 H 1.08998 * 109.68691 * 350.23273 * 27 22 20 50 50 H 1.09000 * 109.68091 * 110.75445 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5925 1.9861 -0.8321 5 7 1.6717 2.0907 1.2611 6 6 0.4563 2.6569 1.3980 7 8 -0.3326 2.6295 0.4774 8 6 0.0777 3.3241 2.6951 9 6 -1.3429 3.8815 2.5863 10 6 -1.7276 4.5584 3.9034 11 6 -3.1485 5.1153 3.7948 12 6 -3.5271 5.7825 5.0919 13 1 -2.8243 5.8072 5.9117 14 6 -4.7702 6.3622 5.2318 15 7 -5.1008 6.9440 6.3640 16 14 -5.9854 6.3200 3.8136 17 1 -6.8197 5.0956 3.9129 18 1 -6.8582 7.5199 3.8739 19 1 -5.2442 6.3110 2.5269 20 6 3.5398 1.4450 -0.1469 21 8 4.2451 1.5359 0.8355 22 7 4.0972 1.3463 -1.3700 23 6 3.2649 1.3392 -2.5834 24 6 3.8303 2.3845 -3.5584 25 8 5.2270 2.1440 -3.7457 26 6 6.0091 2.2812 -2.5569 27 6 5.5558 1.2363 -1.5310 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 2.3026 2.1123 1.9976 34 1 0.1215 2.5956 3.5048 35 1 0.7723 4.1384 2.9012 36 1 -1.3864 4.6101 1.7768 37 1 -2.0379 3.0674 2.3801 38 1 -1.6842 3.8295 4.7128 39 1 -1.0327 5.3724 4.1100 40 1 -3.1923 5.8440 2.9854 41 1 -3.8430 4.3010 3.5885 42 1 -5.9755 7.3515 6.4624 43 1 3.2941 0.3511 -3.0428 44 1 2.2372 1.5943 -2.3252 45 1 3.6847 3.3842 -3.1491 46 1 3.3154 2.3046 -4.5158 47 1 5.8714 3.2805 -2.1439 48 1 7.0619 2.1268 -2.7931 49 1 6.0458 1.4233 -0.5755 50 1 5.8117 0.2378 -1.8856 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588941071.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:10 Heat of formation + Delta-G solvation = -131.815145 kcal Electronic energy + Delta-G solvation = -28153.213398 eV Core-core repulsion = 24180.072825 eV Total energy + Delta-G solvation = -3973.140573 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.25559 -39.89526 -38.75164 -35.89796 -35.39369 -34.90201 -32.87454 -32.36809 -32.04522 -30.12790 -29.00820 -27.40700 -25.71811 -24.68128 -23.09919 -22.49670 -21.48728 -20.42189 -20.02488 -19.82695 -18.10200 -17.38546 -16.72901 -16.72042 -16.50512 -16.23477 -15.94371 -15.85220 -15.53845 -15.20165 -14.73490 -14.42268 -14.23911 -13.98509 -13.81856 -13.43312 -13.21263 -12.94695 -12.64663 -12.47705 -12.32794 -12.21351 -12.09338 -12.00643 -11.82317 -11.71114 -11.35496 -11.22148 -11.07602 -10.80083 -10.73324 -10.53144 -10.27843 -10.00279 -9.81682 -9.64335 -9.43117 -9.29208 -9.20841 -9.11051 -8.48668 -5.99661 -3.97085 1.94572 2.12124 2.59888 3.03166 3.19527 3.35448 3.42414 3.48133 3.76977 4.07217 4.28054 4.42640 4.43515 4.50149 4.50495 4.61334 4.63064 4.76444 4.87374 4.98967 5.01444 5.09331 5.14340 5.19544 5.25054 5.28469 5.29891 5.35293 5.43508 5.67288 5.71304 5.77988 5.83409 6.03584 6.11074 6.15560 6.20368 6.41840 6.46252 6.65812 6.68802 6.82344 6.99871 7.33101 7.38968 7.48350 7.51689 7.85634 8.13125 8.59373 9.05504 9.63598 11.13835 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.022199 B = 0.002007 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.023066 B =13948.001551 C =14003.301573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.126 4.126 3 C 0.128 3.872 4 H 0.110 0.890 5 N -0.722 5.722 6 C 0.517 3.483 7 O -0.531 6.531 8 C -0.139 4.139 9 C -0.104 4.104 10 C -0.103 4.103 11 C -0.015 4.015 12 C -0.519 4.519 13 H 0.071 0.929 14 C 0.064 3.936 15 N -0.906 5.906 16 Si 0.880 3.120 17 H -0.277 1.277 18 H -0.289 1.289 19 H -0.265 1.265 20 C 0.518 3.482 21 O -0.531 6.531 22 N -0.614 5.614 23 C 0.066 3.934 24 C 0.046 3.954 25 O -0.378 6.378 26 C 0.047 3.953 27 C 0.076 3.924 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.410 0.590 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.015 0.985 41 H 0.011 0.989 42 H 0.262 0.738 43 H 0.084 0.916 44 H 0.101 0.899 45 H 0.059 0.941 46 H 0.111 0.889 47 H 0.058 0.942 48 H 0.109 0.891 49 H 0.103 0.897 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.199 -15.481 -21.304 35.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.165 4.165 3 C 0.019 3.981 4 H 0.128 0.872 5 N -0.378 5.378 6 C 0.305 3.695 7 O -0.407 6.407 8 C -0.179 4.179 9 C -0.142 4.142 10 C -0.141 4.141 11 C -0.052 4.052 12 C -0.557 4.557 13 H 0.089 0.911 14 C -0.137 4.137 15 N -0.545 5.545 16 Si 0.708 3.292 17 H -0.203 1.203 18 H -0.215 1.215 19 H -0.189 1.189 20 C 0.306 3.694 21 O -0.407 6.407 22 N -0.349 5.349 23 C -0.057 4.057 24 C -0.031 4.031 25 O -0.296 6.296 26 C -0.030 4.030 27 C -0.046 4.046 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.247 0.753 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.033 0.967 41 H 0.029 0.971 42 H 0.072 0.928 43 H 0.103 0.897 44 H 0.119 0.881 45 H 0.078 0.922 46 H 0.129 0.871 47 H 0.076 0.924 48 H 0.127 0.873 49 H 0.122 0.878 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 22.939 -15.388 -21.516 35.014 hybrid contribution -0.461 0.055 -0.065 0.468 sum 22.479 -15.334 -21.581 34.730 Atomic orbital electron populations 1.21811 0.93318 1.01270 1.03804 1.21869 0.98199 0.93495 1.02903 1.20877 0.90518 0.96371 0.90354 0.87227 1.45943 1.17631 1.58738 1.15506 1.21069 0.80461 0.77224 0.90725 1.90697 1.49881 1.58258 1.41883 1.21784 1.00756 1.01143 0.94168 1.21477 0.92642 1.00459 0.99666 1.21482 0.99118 0.98932 0.94563 1.19573 0.92314 0.95755 0.97598 1.21188 1.00641 1.35149 0.98716 0.91111 1.25053 0.98188 0.94856 0.95595 1.69924 1.21488 1.38096 1.25008 0.86766 0.81260 0.77509 0.83710 1.20331 1.21481 1.18914 1.20751 0.90630 0.75420 0.82629 1.90703 1.63618 1.49124 1.37243 1.48080 1.07432 1.73503 1.05873 1.22720 0.95888 1.01395 0.85695 1.23089 0.82322 0.97456 1.00271 1.87987 1.18171 1.91360 1.32128 1.23004 0.96287 0.98110 0.85603 1.22345 0.80280 1.00338 1.01666 0.92926 0.91692 0.91880 0.90982 0.90989 0.75346 0.88822 0.88872 0.91792 0.91759 0.92837 0.92834 0.96652 0.97067 0.92834 0.89744 0.88129 0.92234 0.87136 0.92401 0.87348 0.87825 0.90333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 8.53 37.16 0.32 -1.08 16 2 C -0.13 -1.02 5.59 -26.73 -0.15 -1.17 16 3 C 0.13 1.15 1.90 -69.08 -0.13 1.02 16 4 H 0.11 0.99 5.57 -51.93 -0.29 0.70 16 5 N -0.72 -7.44 5.01 -54.94 -0.28 -7.72 16 6 C 0.52 6.49 6.44 -10.99 -0.07 6.42 16 7 O -0.53 -8.06 13.12 5.56 0.07 -7.99 16 8 C -0.14 -1.73 5.70 -27.88 -0.16 -1.89 16 9 C -0.10 -1.71 4.50 -26.73 -0.12 -1.83 16 10 C -0.10 -2.03 5.15 -26.73 -0.14 -2.16 16 11 C -0.02 -0.37 4.04 -27.88 -0.11 -0.48 16 12 C -0.52 -15.12 9.66 -34.44 -0.33 -15.45 16 13 H 0.07 2.20 7.99 -52.48 -0.42 1.78 16 14 C 0.06 1.90 5.47 -17.82 -0.10 1.81 16 15 N -0.91 -28.45 13.96 55.43 0.77 -27.67 16 16 Si 0.88 22.33 27.47 -169.99 -4.67 17.66 16 17 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 19 H -0.26 -6.49 6.54 56.52 0.37 -6.12 16 20 C 0.52 4.85 6.93 -10.98 -0.08 4.77 16 21 O -0.53 -6.45 15.44 5.56 0.09 -6.37 16 22 N -0.61 -4.38 3.01 -172.02 -0.52 -4.90 16 23 C 0.07 0.33 6.37 -3.32 -0.02 0.31 16 24 C 0.05 0.23 7.00 37.53 0.26 0.50 16 25 O -0.38 -2.58 10.74 -35.23 -0.38 -2.96 16 26 C 0.05 0.26 6.98 37.31 0.26 0.52 16 27 C 0.08 0.47 6.65 -3.53 -0.02 0.44 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.78 5.62 -51.93 -0.29 0.49 16 30 H 0.06 0.64 7.90 -51.93 -0.41 0.23 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.45 7.97 -51.93 -0.41 0.04 16 33 H 0.41 3.95 7.76 -40.82 -0.32 3.63 16 34 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.06 1.10 8.10 -51.93 -0.42 0.68 16 37 H 0.06 1.09 8.10 -51.92 -0.42 0.67 16 38 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 41 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 42 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 43 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.10 0.45 5.50 -51.93 -0.29 0.16 16 45 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 46 H 0.11 0.36 8.14 -51.93 -0.42 -0.07 16 47 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.10 0.73 7.06 -51.93 -0.37 0.36 16 50 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 392.79 15.07 5.92 5.92 Total: -1.00 -35.30 392.79 -8.22 -43.52 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -8.64 Total: -1.21 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: -0.59 Total: -8.28 kcal Atomic # 7 Polarization: -40.27 SS G_CDS: -0.02 Total: -40.29 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -0.22 Total: -17.32 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.67 Total: 17.66 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.30 -8.22 -43.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588941071.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.292 kcal (2) G-P(sol) polarization free energy of solvation -35.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds